View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4046_low_20 (Length: 249)

Name: NF4046_low_20
Description: NF4046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4046_low_20
NF4046_low_20
[»] chr5 (7 HSPs)
chr5 (2-113)||(13675602-13675713)
chr5 (169-239)||(13675769-13675839)
chr5 (189-220)||(34159304-34159335)
chr5 (62-95)||(7399757-7399790)
chr5 (188-233)||(7952686-7952731)
chr5 (63-104)||(12854576-12854617)
chr5 (187-228)||(23226733-23226774)
[»] chr2 (3 HSPs)
chr2 (188-239)||(9253250-9253301)
chr2 (189-239)||(14951833-14951883)
chr2 (188-228)||(6424332-6424372)
[»] chr1 (2 HSPs)
chr1 (192-239)||(29570666-29570713)
chr1 (54-107)||(4969357-4969410)
[»] chr8 (2 HSPs)
chr8 (186-228)||(12649628-12649670)
chr8 (186-239)||(2241595-2241648)
[»] chr7 (3 HSPs)
chr7 (186-220)||(41054717-41054751)
chr7 (62-104)||(43575063-43575105)
chr7 (65-113)||(46738268-46738316)
[»] chr4 (3 HSPs)
chr4 (63-104)||(43264342-43264383)
chr4 (56-96)||(26198138-26198178)
chr4 (188-228)||(53563271-53563311)
[»] chr3 (2 HSPs)
chr3 (63-104)||(36546104-36546145)
chr3 (63-104)||(36562169-36562210)


Alignment Details
Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 13675602 - 13675713
Alignment:
Q  2 tgccatagataacaaatggtagttaactgtgatttagtgcactgagctgcccttatttttacaaaattacatatatagtcctttaacttaatttccggta 101  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13675602 tgccatagataacaaatggtagttaactgtgatttagtgcactgggctgcccttatttttacaaaattacatatatagtcctttaacttaatttctggta 13675701  T
Q  102 acacttcggttc 113  Q
    | ||||||||||    
T  13675702 aaacttcggttc 13675713  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 13675769 - 13675839
Alignment:
Q  169 caagcttcaagtctaagggttttattttcttatggcctctcaatctttaaatatatggtccttcacctatg 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13675769 caagcttcaagtctaagggttttattttcttatggcctctcaatcttcaaatatatggtccttcacctatg 13675839  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 220
Target Start/End: Original strand, 34159304 - 34159335
Alignment:
Q  189 tttattttcttatggcctctcaatctttaaat 220  Q
    ||||||||||||||||||||||||||||||||    
T  34159304 tttattttcttatggcctctcaatctttaaat 34159335  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 95
Target Start/End: Original strand, 7399757 - 7399790
Alignment:
Q  62 acaaaattacatatatagtcctttaacttaattt 95  Q
    ||||||||||||||||||||| ||||||||||||    
T  7399757 acaaaattacatatatagtcccttaacttaattt 7399790  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 7952686 - 7952731
Alignment:
Q  188 ttttattttcttatggcctctcaatctttaaatatatggtccttca 233  Q
    |||| |||||||||| ||||||||| ||||||||||||||| ||||    
T  7952686 ttttcttttcttatgacctctcaatttttaaatatatggtctttca 7952731  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 12854576 - 12854617
Alignment:
Q  63 caaaattacatatatagtcctttaacttaatttccggtaaca 104  Q
    ||||||||||| | |||||||||||||||||||| |||||||    
T  12854576 caaaattacatttttagtcctttaacttaatttcaggtaaca 12854617  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 23226733 - 23226774
Alignment:
Q  187 gttttattttcttatggcctctcaatctttaaatatatggtc 228  Q
    |||||||||||||||| ||| ||||||||||||| |||||||    
T  23226733 gttttattttcttatgacctttcaatctttaaatctatggtc 23226774  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 9253301 - 9253250
Alignment:
Q  188 ttttattttcttatggcctctcaatctttaaatatatggtccttcacctatg 239  Q
    |||| |||||| |||||||||||||||| |||||||||||| |||| |||||    
T  9253301 tttttttttctcatggcctctcaatcttcaaatatatggtctttcatctatg 9253250  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 14951883 - 14951833
Alignment:
Q  189 tttattttcttatggcctctcaatctttaaatatatggtccttcacctatg 239  Q
    ||||||||||||||||||||||||||| ||||  |||||| |||| |||||    
T  14951883 tttattttcttatggcctctcaatcttcaaattcatggtctttcatctatg 14951833  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 6424332 - 6424372
Alignment:
Q  188 ttttattttcttatggcctctcaatctttaaatatatggtc 228  Q
    ||||||||||||| | ||||||||||||||||| |||||||    
T  6424332 ttttattttcttacgacctctcaatctttaaatttatggtc 6424372  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 239
Target Start/End: Original strand, 29570666 - 29570713
Alignment:
Q  192 attttcttatggcctctcaatctttaaatatatggtccttcacctatg 239  Q
    |||||||||| ||||||||||||| |||| ||||||| ||||||||||    
T  29570666 attttcttatagcctctcaatcttcaaatctatggtctttcacctatg 29570713  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 4969357 - 4969410
Alignment:
Q  54 ttatttttacaaaattacatatatagtcctttaacttaatttccggtaacactt 107  Q
    |||||||  |||||||| ||| ||||||||||||||||||||  ||||||||||    
T  4969357 ttattttggcaaaattatataaatagtcctttaacttaattttaggtaacactt 4969410  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 12649670 - 12649628
Alignment:
Q  186 ggttttattttcttatggcctctcaatctttaaatatatggtc 228  Q
    |||||||||||||||||| || ||||||||||||||| |||||    
T  12649670 ggttttattttcttatggtctttcaatctttaaatatgtggtc 12649628  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 2241595 - 2241648
Alignment:
Q  186 ggttttattttcttatggcctctcaatctttaaatatatggtccttcacctatg 239  Q
    |||||||||||||||||||||| ||||||| |||| |||| || |||| |||||    
T  2241595 ggttttattttcttatggcctcccaatcttcaaatctatgatctttcatctatg 2241648  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 220
Target Start/End: Original strand, 41054717 - 41054751
Alignment:
Q  186 ggttttattttcttatggcctctcaatctttaaat 220  Q
    ||||||||||||||||||||| |||||||||||||    
T  41054717 ggttttattttcttatggcctttcaatctttaaat 41054751  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 104
Target Start/End: Original strand, 43575063 - 43575105
Alignment:
Q  62 acaaaattacatatatagtcctttaacttaatttccggtaaca 104  Q
    |||||||||||| |||||||| ||||||||||||| |||||||    
T  43575063 acaaaattacatttatagtcccttaacttaatttcaggtaaca 43575105  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 46738268 - 46738316
Alignment:
Q  65 aaattacatatatagtcctttaacttaatttccggtaacacttcggttc 113  Q
    ||||||||| | |||||||||||||||||||| ||||||| || |||||    
T  46738268 aaattacatttttagtcctttaacttaatttcaggtaacagtttggttc 46738316  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 43264383 - 43264342
Alignment:
Q  63 caaaattacatatatagtcctttaacttaatttccggtaaca 104  Q
    ||||||||||| | |||||||||||||||||||| |||||||    
T  43264383 caaaattacatttttagtcctttaacttaatttcaggtaaca 43264342  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 26198178 - 26198138
Alignment:
Q  56 atttttacaaaattacatatatagtcctttaacttaatttc 96  Q
    |||||| ||||||||| |||||||||| |||||||||||||    
T  26198178 atttttgcaaaattacttatatagtcccttaacttaatttc 26198138  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 53563311 - 53563271
Alignment:
Q  188 ttttattttcttatggcctctcaatctttaaatatatggtc 228  Q
    ||||||||||||| | |||||||||||| ||||||||||||    
T  53563311 ttttattttcttaggacctctcaatcttcaaatatatggtc 53563271  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 36546104 - 36546145
Alignment:
Q  63 caaaattacatatatagtcctttaacttaatttccggtaaca 104  Q
    ||||||||||| | |||||||||||||||||||| |||||||    
T  36546104 caaaattacatttttagtcctttaacttaatttcaggtaaca 36546145  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 36562210 - 36562169
Alignment:
Q  63 caaaattacatatatagtcctttaacttaatttccggtaaca 104  Q
    ||||||||||| | |||||||||||||||||||| |||||||    
T  36562210 caaaattacatttttagtcctttaacttaatttcaggtaaca 36562169  T

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