View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4046_low_22 (Length: 241)

Name: NF4046_low_22
Description: NF4046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4046_low_22
NF4046_low_22
[»] chr5 (22 HSPs)
chr5 (22-241)||(25562474-25562692)
chr5 (122-241)||(26406656-26406775)
chr5 (122-241)||(25837987-25838106)
chr5 (128-241)||(17841432-17841546)
chr5 (122-241)||(40222642-40222762)
chr5 (144-241)||(31782640-31782738)
chr5 (122-241)||(22672713-22672833)
chr5 (132-241)||(25445381-25445491)
chr5 (122-241)||(2298184-2298305)
chr5 (140-239)||(16093475-16093575)
chr5 (132-241)||(25452384-25452494)
chr5 (122-241)||(35385635-35385755)
chr5 (140-241)||(11962616-11962717)
chr5 (122-241)||(1240307-1240427)
chr5 (140-241)||(10627260-10627363)
chr5 (128-237)||(42238188-42238298)
chr5 (132-241)||(1170702-1170810)
chr5 (144-220)||(35314703-35314779)
chr5 (151-222)||(4754166-4754237)
chr5 (128-241)||(28786291-28786403)
chr5 (142-215)||(29748349-29748423)
chr5 (209-241)||(4897792-4897824)
[»] chr1 (14 HSPs)
chr1 (122-241)||(3091289-3091409)
chr1 (140-241)||(4144866-4144967)
chr1 (122-241)||(9526345-9526465)
chr1 (122-241)||(21353529-21353649)
chr1 (122-241)||(25133951-25134070)
chr1 (131-241)||(14996929-14997039)
chr1 (122-241)||(2393465-2393584)
chr1 (132-241)||(9521604-9521714)
chr1 (151-241)||(46783052-46783142)
chr1 (132-241)||(2232488-2232596)
chr1 (177-241)||(2401404-2401468)
chr1 (148-222)||(14352964-14353038)
chr1 (171-219)||(13785483-13785531)
chr1 (143-236)||(20566857-20566947)
[»] chr7 (29 HSPs)
chr7 (122-241)||(25351233-25351352)
chr7 (122-241)||(25356927-25357046)
chr7 (140-241)||(44016844-44016946)
chr7 (122-241)||(25410010-25410129)
chr7 (140-241)||(21369539-21369641)
chr7 (122-241)||(34547046-34547166)
chr7 (132-241)||(8378687-8378797)
chr7 (133-241)||(44144049-44144157)
chr7 (122-241)||(6067383-6067503)
chr7 (140-241)||(44010933-44011035)
chr7 (128-241)||(7464701-7464815)
chr7 (128-241)||(44512708-44512822)
chr7 (144-241)||(42006565-42006662)
chr7 (161-241)||(1099617-1099697)
chr7 (132-241)||(7069671-7069779)
chr7 (132-241)||(7074678-7074786)
chr7 (132-241)||(15541178-15541286)
chr7 (132-241)||(25405284-25405392)
chr7 (144-237)||(2120800-2120894)
chr7 (144-241)||(30246872-30246969)
chr7 (132-241)||(3320233-3320341)
chr7 (132-241)||(3324981-3325089)
chr7 (143-222)||(11081520-11081600)
chr7 (170-222)||(11084417-11084469)
chr7 (145-221)||(45366544-45366619)
chr7 (204-241)||(1099717-1099754)
chr7 (142-222)||(6048882-6048963)
chr7 (172-222)||(6332263-6332313)
chr7 (168-212)||(13290681-13290725)
[»] chr4 (35 HSPs)
chr4 (122-241)||(16489229-16489348)
chr4 (122-241)||(16638706-16638826)
chr4 (122-241)||(25699629-25699748)
chr4 (144-241)||(15312218-15312315)
chr4 (140-241)||(47566390-47566492)
chr4 (140-241)||(13072164-13072265)
chr4 (144-241)||(36769380-36769478)
chr4 (140-241)||(36771293-36771395)
chr4 (122-241)||(15831020-15831140)
chr4 (122-241)||(18586845-18586965)
chr4 (122-241)||(31300303-31300423)
chr4 (122-241)||(4569974-4570093)
chr4 (122-241)||(4556242-4556362)
chr4 (151-241)||(8529176-8529266)
chr4 (144-239)||(32274087-32274181)
chr4 (140-241)||(4558208-4558310)
chr4 (144-241)||(15316860-15316957)
chr4 (153-241)||(25614103-25614191)
chr4 (168-241)||(26557664-26557737)
chr4 (122-241)||(4884753-4884873)
chr4 (122-241)||(16689123-16689243)
chr4 (132-241)||(11853440-11853548)
chr4 (151-237)||(3982365-3982450)
chr4 (144-241)||(55822169-55822264)
chr4 (144-238)||(4874665-4874759)
chr4 (170-241)||(7050440-7050511)
chr4 (143-222)||(10112925-10113005)
chr4 (142-222)||(38208880-38208961)
chr4 (151-241)||(16186019-16186108)
chr4 (173-239)||(5336967-5337035)
chr4 (142-222)||(9022359-9022440)
chr4 (144-222)||(23001582-23001660)
chr4 (144-222)||(5516453-5516531)
chr4 (142-222)||(52043579-52043660)
chr4 (143-222)||(47151090-47151169)
[»] chr6 (25 HSPs)
chr6 (140-241)||(19702045-19702147)
chr6 (122-241)||(17695034-17695154)
chr6 (122-241)||(25466082-25466202)
chr6 (122-241)||(22342984-22343104)
chr6 (122-241)||(3577697-3577817)
chr6 (122-241)||(22352035-22352155)
chr6 (122-241)||(13467646-13467766)
chr6 (141-241)||(26643075-26643175)
chr6 (141-241)||(26749041-26749141)
chr6 (144-239)||(24542859-24542953)
chr6 (161-241)||(17035974-17036054)
chr6 (122-241)||(25941524-25941643)
chr6 (128-239)||(33215712-33215824)
chr6 (132-241)||(13878618-13878726)
chr6 (132-241)||(13883366-13883474)
chr6 (132-241)||(16785810-16785918)
chr6 (132-241)||(31248897-31249005)
chr6 (132-241)||(35201509-35201617)
chr6 (144-241)||(26887407-26887502)
chr6 (174-241)||(12166329-12166397)
chr6 (142-222)||(22858150-22858231)
chr6 (142-222)||(30445552-30445633)
chr6 (140-241)||(5165999-5166099)
chr6 (168-241)||(7293862-7293935)
chr6 (153-222)||(20526855-20526924)
[»] chr8 (24 HSPs)
chr8 (122-241)||(2267206-2267326)
chr8 (144-241)||(28895404-28895501)
chr8 (140-241)||(30423109-30423211)
chr8 (140-241)||(33032552-33032653)
chr8 (144-241)||(590696-590793)
chr8 (144-241)||(23179744-23179841)
chr8 (144-241)||(26268413-26268510)
chr8 (122-241)||(9021290-9021410)
chr8 (122-241)||(21033749-21033869)
chr8 (122-241)||(29554968-29555088)
chr8 (140-241)||(17799607-17799708)
chr8 (144-240)||(17847581-17847676)
chr8 (132-241)||(28327799-28327907)
chr8 (144-241)||(16752705-16752800)
chr8 (132-241)||(4812670-4812778)
chr8 (132-241)||(25684534-25684642)
chr8 (144-241)||(16757450-16757545)
chr8 (144-238)||(15944775-15944869)
chr8 (144-241)||(15949436-15949533)
chr8 (132-241)||(28332522-28332630)
chr8 (128-241)||(3276229-3276343)
chr8 (152-241)||(33021080-33021170)
chr8 (144-241)||(28228416-28228513)
chr8 (149-222)||(31573922-31573995)
[»] chr3 (35 HSPs)
chr3 (122-241)||(13893341-13893461)
chr3 (122-241)||(5858425-5858545)
chr3 (122-241)||(10612961-10613081)
chr3 (122-241)||(47878354-47878474)
chr3 (122-241)||(10896884-10897004)
chr3 (142-241)||(3329792-3329892)
chr3 (122-241)||(27762169-27762287)
chr3 (122-241)||(47883065-47883184)
chr3 (140-241)||(38002767-38002868)
chr3 (122-241)||(54193104-54193225)
chr3 (122-241)||(22626167-22626287)
chr3 (122-241)||(10949443-10949561)
chr3 (135-241)||(10595217-10595323)
chr3 (132-241)||(29914136-29914246)
chr3 (144-241)||(15823793-15823889)
chr3 (122-241)||(11079397-11079516)
chr3 (132-241)||(16462092-16462202)
chr3 (122-241)||(4535493-4535613)
chr3 (144-237)||(26762941-26763033)
chr3 (144-241)||(54188410-54188508)
chr3 (132-241)||(6303201-6303309)
chr3 (132-241)||(10094257-10094365)
chr3 (132-241)||(10100274-10100382)
chr3 (132-241)||(10201137-10201245)
chr3 (132-241)||(10208183-10208291)
chr3 (147-235)||(16996780-16996868)
chr3 (144-241)||(27544177-27544272)
chr3 (168-241)||(20031501-20031574)
chr3 (144-241)||(27703353-27703450)
chr3 (151-241)||(46966831-46966921)
chr3 (122-198)||(48390445-48390523)
chr3 (204-241)||(42297839-42297876)
chr3 (140-198)||(7417967-7418026)
chr3 (143-195)||(1618882-1618934)
chr3 (149-222)||(13419870-13419943)
[»] scaffold0004 (1 HSPs)
scaffold0004 (122-241)||(188425-188545)
[»] chr2 (30 HSPs)
chr2 (122-241)||(35894444-35894564)
chr2 (122-241)||(12781404-12781523)
chr2 (122-241)||(38190877-38190996)
chr2 (122-241)||(22712699-22712819)
chr2 (122-241)||(30478873-30478993)
chr2 (132-241)||(17932523-17932633)
chr2 (144-241)||(27517822-27517919)
chr2 (122-241)||(17943417-17943536)
chr2 (132-241)||(33674588-33674698)
chr2 (122-241)||(20050205-20050325)
chr2 (144-241)||(33603897-33603993)
chr2 (122-241)||(37170935-37171055)
chr2 (132-241)||(22717408-22717518)
chr2 (122-241)||(20054948-20055068)
chr2 (144-235)||(30261962-30262052)
chr2 (132-241)||(17462327-17462435)
chr2 (132-241)||(39686874-39686982)
chr2 (132-241)||(45567300-45567408)
chr2 (132-241)||(2736096-2736204)
chr2 (132-241)||(2740832-2740940)
chr2 (132-241)||(39679936-39680044)
chr2 (144-222)||(26345575-26345653)
chr2 (143-222)||(43139354-43139434)
chr2 (191-237)||(45158257-45158303)
chr2 (170-222)||(30720820-30720872)
chr2 (140-222)||(27248111-27248193)
chr2 (144-222)||(35028556-35028634)
chr2 (140-212)||(39287183-39287256)
chr2 (144-216)||(10942726-10942798)
chr2 (144-216)||(10948595-10948667)
[»] scaffold0256 (1 HSPs)
scaffold0256 (132-241)||(16214-16324)
[»] scaffold0209 (1 HSPs)
scaffold0209 (144-241)||(17169-17266)
[»] scaffold0131 (1 HSPs)
scaffold0131 (132-241)||(31032-31140)
[»] scaffold0006 (1 HSPs)
scaffold0006 (132-241)||(224710-224818)
[»] scaffold1764 (1 HSPs)
scaffold1764 (132-196)||(1325-1391)


Alignment Details
Target: chr5 (Bit Score: 164; Significance: 9e-88; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 25562692 - 25562474
Alignment:
22 tatcaccttctgaacttgtttctaatcatatcaatgtcttgcttgtgtcacaatttgataattcacccgttgacacatcacagttaggtattcaccatgt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
25562692 tatcaccttctgaacttgtttctaatcatatcaatgtcttgcttgtgtcacaatttgattattcacccgttgacacatcacagttaggcattcaccatgt 25562593  T
122 tatcatatgaaaaagtgcgtagaaaacaaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagatt 221  Q
    ||||| ||||||| ||| |||||||| |||| ||||||||||||||||||| |||| ||||||||||||||| ||||||||||| | |||| ||||||||    
25562592 tatcagatgaaaacgtgtgtagaaaataagg-ttagaaaccaacatacaaattaggatttatagaaatttcttttgggaacaaatattaggattgagatt 25562494  T
222 gttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||    
25562493 gttttgattcaccttgaaca 25562474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 26406775 - 26406656
Alignment:
122 tatcatatgaaaaagtgcgtagaaaacaaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagatt 221  Q
    ||||||||||||| ||| |||||||||| |||||||||||||||| ||||||||||||||||||| | ||||||||| ||||||||||||||||||||||    
26406775 tatcatatgaaaatgtgtgtagaaaacagggtttagaaaccaacaaacaaactagggtttatagagaattctcttggcaacaaacactagggttgagatt 26406676  T
222 gttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||    
26406675 gttttgattcaccttgaaca 26406656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 25837987 - 25838106
Alignment:
122 tatcatatgaaaaagtgcgtagaaaacaaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagatt 221  Q
    ||||||||||||| ||| |||||||||||||||||||| |||||| | |||||| |||||||||| | ||||||||| ||||||||||||||||||||||    
25837987 tatcatatgaaaacgtgtgtagaaaacaaggtttagaagccaacaaagaaactatggtttatagagaattctcttggtaacaaacactagggttgagatt 25838086  T
222 gttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||    
25838087 gttttgattcaccttgaaca 25838106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 128 - 241
Target Start/End: Complemental strand, 17841546 - 17841432
Alignment:
128 atgaaaaagtgcgtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgtttt 226  Q
    |||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||| ||  || ||||||||||||||||||||    
17841546 atgataaagtgcgtagaaaacagggtttagaaaccatcatacaaactagggtttatagagaatttctcttggcaaacaatactagggttgagattgtttt 17841447  T
227 gattcaccttgaaca 241  Q
    |||||||||||||||    
17841446 gattcaccttgaaca 17841432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 40222642 - 40222762
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||    
40222642 tatcagatgataaagtgtgtagaaaaacaaggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgaga 40222740  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
40222741 ttgttttgattcaccttgaaca 40222762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 31782738 - 31782640
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    |||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
31782738 aaaacagggtttagaagccaacatacaaactagggtttatagataatttctcttggcaacaaacactagggttgggattgttttgattcaccttgaaca 31782640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 22672713 - 22672833
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||    
22672713 tatcagatgataaagtgtgtagaaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttggga 22672811  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
22672812 ttgttttgattcaccttgaaca 22672833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 25445381 - 25445491
Alignment:
132 aaaagtgcgtaga-aaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||| ||||||||||||    
25445381 aaaagtgtgtagataaacaaggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaac-aactctagggttgggattgttttgat 25445479  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
25445480 tcaccttgaaca 25445491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 2298305 - 2298184
Alignment:
122 tatcatatga-aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgag 218  Q
    |||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| ||| ||||||||| |    
2298305 tatcatatgataaaagtgtgtagaaaaacaaggtttagaaaccaacatacaaactagggtttatagagaatctctcttggcaac-aactctagggttggg 2298207  T
219 attgttttgattcaccttgaaca 241  Q
    |||||||||||||||||||||||    
2298206 attgttttgattcaccttgaaca 2298184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 140 - 239
Target Start/End: Complemental strand, 16093575 - 16093475
Alignment:
140 gtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttga 238  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||  ||||||||||||||||    
16093575 gtagaaaacagggtttagaagccaacatacaaactagggtttatagataatttctcttggcaacaaacactagggttgggatctttttgattcaccttga 16093476  T
239 a 239  Q
    |    
16093475 a 16093475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 25452384 - 25452494
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||| |||| |||| ||||||||||||    
25452384 aaaagtgtgtagaaaaacaaggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaac-aactctagcgttgggattgttttgat 25452482  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
25452483 tcaccttgaaca 25452494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 35385755 - 35385635
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| ||| |||||||||| |||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||| ||    
35385755 tatcaaatgataaagtgtgtagaaaaacaaagtttagaaactaacatacaaactagggtttatagagaatttctcttggcaac-aactctagggttggga 35385657  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
35385656 ttgttttgattcaccttgaaca 35385635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 11962717 - 11962616
Alignment:
140 gtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttga 238  Q
    |||||||||| ||||||||| ||||||||||||||| |||| ||||| |||||||||||| ||||| ||||||||||||||||||||||||||||| |||    
11962717 gtagaaaacagggtttagaagccaacatacaaactatggttcatagagaatttctcttggcaacaa-cactagggttgagattgttttgattcaccatga 11962619  T
239 aca 241  Q
    |||    
11962618 aca 11962616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 1240307 - 1240427
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || ||||||||| |||||||||||||||||||||||||| | |||||||| | ||| ||||||||||||| ||    
1240307 tatcagatgataaagtgtgtagaaaaacagggtttagaagccaacatacaaactagggtttatagatattttctctttgcaac-aacactagggttggga 1240405  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
1240406 ttgttttgattcaccttgaaca 1240427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 241
Target Start/End: Original strand, 10627260 - 10627363
Alignment:
140 gtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattg-ttttgattcaccttg 237  Q
    |||||||||| ||||||||| |||||||||||||||| ||||||||| |||||||||| | ||||||||||||||||  ||||| |||||||||||||||    
10627260 gtagaaaacagggtttagaagccaacatacaaactagtgtttatagagaatttctcttagcaacaaacactagggttaggattgtttttgattcaccttg 10627359  T
238 aaca 241  Q
    ||||    
10627360 aaca 10627363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 237
Target Start/End: Original strand, 42238188 - 42238298
Alignment:
128 atgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttt 225  Q
    |||| |||||| |||||||| || ||||||||| |||||||||||||||||||||||||| |||||||||| | ||| ||||||||||||| ||||||||    
42238188 atgataaagtgtgtagaaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctctttgcaac-aacactagggttgggattgttt 42238286  T
226 tgattcaccttg 237  Q
    ||||||||||||    
42238287 tgattcaccttg 42238298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 1170702 - 1170810
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||  |||||| ||||||||||||||||||| ||| |||||||| ||||| | ||||||||| ||||||||||||    
1170702 aaaagtgtgtagaaaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttggcaacaa-ctctagggttgggattgttttgat 1170798  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
1170799 tcaccttgaaca 1170810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 220
Target Start/End: Original strand, 35314703 - 35314779
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagat 220  Q
    |||||| ||||||||||| ||   ||||||||| ||||||||   |||||||||| |||||||||||||||||||||    
35314703 aaaacagggtttagaaacaaaacaacaaactagagtttataggggtttctcttggcaacaaacactagggttgagat 35314779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 4754166 - 4754237
Alignment:
151 ggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattg 222  Q
    |||||| || |||||| | | |||||||||| ||||  || ||||||| |||||||||||||||||||||||    
4754166 ggtttaaaagccaacacaaacactagggtttgtagagtttgctcttggcaacaaacactagggttgagattg 4754237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 241
Target Start/End: Original strand, 28786291 - 28786403
Alignment:
128 atgaaaaagtgcgtagaaaacaagg-tttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttt 225  Q
    ||||||| ||||||||||||  ||| |||||||  |||||||||||| |||||| ||| | || ||||||||  ||||| |||||||||||  |||||||    
28786291 atgaaaaggtgcgtagaaaaacaggatttagaaggcaacatacaaacaagggtt-ataaagaacttctcttgc-aacaa-cactagggttggaattgttt 28786387  T
226 tgattcaccttgaaca 241  Q
    ||||||||||||||||    
28786388 tgattcaccttgaaca 28786403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 29748349 - 29748423
Alignment:
142 agaaaacaagg-tttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggtt 215  Q
    ||||||||||| ||||||| ||||||   |||||||||||| |||| | ||||||||| |||||||| |||||||    
29748349 agaaaacaagggtttagaagccaacaagaaaactagggtttgtagagaattctcttggcaacaaacagtagggtt 29748423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 4897792 - 4897824
Alignment:
209 tagggttgagattgttttgattcaccttgaaca 241  Q
    |||||||||||||||||| ||||||||||||||    
4897792 tagggttgagattgttttcattcaccttgaaca 4897824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 3091409 - 3091289
Alignment:
122 tatcatatgaaaaagtgcgtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagat 220  Q
    ||||| ||||| | ||| |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
3091409 tatcagatgaatatgtgtgtagaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggtaacaaacactagggttgagat 3091310  T
221 tgttttgattcaccttgaaca 241  Q
    |||||||||||||||||||||    
3091309 tgttttgattcaccttgaaca 3091289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 4144967 - 4144866
Alignment:
140 gtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttga 238  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||    
4144967 gtagaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaa-aaacactagggttgagattgttttgattcaccttga 4144869  T
239 aca 241  Q
    |||    
4144868 aca 4144866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 9526345 - 9526465
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||| ||    
9526345 tatcagatgataaagtgtgtagaaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaac-aactctagggttggga 9526443  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
9526444 ttgttttgattcaccttgaaca 9526465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 21353649 - 21353529
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || ||||||||| |||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||    
21353649 tatcagatgataaagtgtgtagaaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggtaac-aacactagggttggga 21353551  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
21353550 ttgttttgattcaccttgaaca 21353529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 25133951 - 25134070
Alignment:
122 tatcatatgaaaaagtgcgtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagat 220  Q
    ||||| |||| ||| || |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| ||| ||||||| ||||| |||    
25133951 tatcagatgataaaatgtgtagaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaac-aacactatggttgtgat 25134049  T
221 tgttttgattcaccttgaaca 241  Q
    |||||||||||||||||||||    
25134050 tgttttgattcaccttgaaca 25134070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 131 - 241
Target Start/End: Original strand, 14996929 - 14997039
Alignment:
131 aaaaagtgcgtagaaaacaaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattgttttgatt 230  Q
    |||||||| |||||||||| ||||||||| |||||| ||||||||||||||||| | | ||||||||| || |||||||||||||| ||||||||| |||    
14996929 aaaaagtgtgtagaaaacagggtttagaagccaacaaacaaactagggtttataaagaattctcttggtaataaacactagggttgggattgtttttatt 14997028  T
231 caccttgaaca 241  Q
    |||||||||||    
14997029 caccttgaaca 14997039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 2393584 - 2393465
Alignment:
122 tatcatatgaaaaagtgcgtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagat 220  Q
    ||||| ||||||||  | |||||||||||||||||||| ||||||| ||||||| |||||||||| |||||||||||| ||  ||||||||||||| |||    
2393584 tatcagatgaaaaacagagtagaaaacaaggtttagaagccaacatgcaaactaaggtttatagagaatttctcttggcaa-taacactagggttgggat 2393486  T
221 tgttttgattcaccttgaaca 241  Q
    |||||||||||||||||||||    
2393485 tgttttgattcaccttgaaca 2393465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 9521604 - 9521714
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    ||||||||| ||||||||||||    
9521604 aaaagtgtgtagaaaaacaaggtttagaaaccaacatacaaactagggtttatagagaatttctcttggtaacattt-ctagggttgggattgttttgat 9521702  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
9521703 tcaccttgaaca 9521714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 241
Target Start/End: Original strand, 46783052 - 46783142
Alignment:
151 ggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    ||||||||| |||||| |||||||| |||||||||| | || |||| | ||||||||||||||||||||| ||||||||||||||||||||    
46783052 ggtttagaagccaacaaacaaactatggtttatagagaattatctttgcaacaaacactagggttgagatcgttttgattcaccttgaaca 46783142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 2232488 - 2232596
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||  |||||| ||||||||||||||||||| ||| |||||||| ||||| |  |||||||| ||||||||||||    
2232488 aaaagtgtgtagaaaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttggcaacaa-ctttagggttgggattgttttgat 2232584  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
2232585 tcaccttgaaca 2232596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 2401468 - 2401404
Alignment:
177 ggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    |||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
2401468 ggtttatagagaatttctcttggcaacaa-cactagggttgagattgttttgattcaccttgaaca 2401404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 14352964 - 14353038
Alignment:
148 caaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattg 222  Q
    ||||| |||||| ||||||   |||||||||||| |||| ||||||||||| ||||||||||||| |||||||||    
14352964 caaggattagaagccaacaacaaaactagggtttgtagagatttctcttggcaacaaacactaggtttgagattg 14353038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 13785531 - 13785483
Alignment:
171 aactagggtttatagaaatttctcttgggaacaaacactagggttgaga 219  Q
    ||||||||||| |||| ||||||||||| ||||||||||||| ||||||    
13785531 aactagggtttgtagagatttctcttggcaacaaacactaggattgaga 13785483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 20566947 - 20566857
Alignment:
143 gaaaacaaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattgttttgattcacctt 236  Q
    ||||||| ||||||||| | |||| |||||||| |||| |||||  |||||||||   |||||||||||||||  |||| ||||||||||||||    
20566947 gaaaacagggtttagaagcaaaca-acaaactaaggttaataga--tttctcttgacgacaaacactagggttaggattattttgattcacctt 20566857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 25351233 - 25351352
Alignment:
122 tatcatatgaaaaagtgcgtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagat 220  Q
    ||||| |||| |||||| |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||    
25351233 tatcagatgataaagtgtgtagaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgagat 25351331  T
221 tgttttgattcaccttgaaca 241  Q
    |||||||||||||||||||||    
25351332 tgttttgattcaccttgaaca 25351352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 25356927 - 25357046
Alignment:
122 tatcatatgaaaaagtgcgtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagat 220  Q
    ||||| |||| |||||| |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||    
25356927 tatcagatgataaagtgtgtagaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgagat 25357025  T
221 tgttttgattcaccttgaaca 241  Q
    |||||||||||||||||||||    
25357026 tgttttgattcaccttgaaca 25357046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 44016946 - 44016844
Alignment:
140 gtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttga 238  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||    
44016946 gtagaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaaacactagggttgggattgttttgattcaccttga 44016847  T
239 aca 241  Q
    |||    
44016846 aca 44016844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 25410010 - 25410129
Alignment:
122 tatcatatgaaaaagtgcgtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagat 220  Q
    ||||| |||| |||||| |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| |||    
25410010 tatcagatgataaagtgtgtagaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgggat 25410108  T
221 tgttttgattcaccttgaaca 241  Q
    |||||||||||||||||||||    
25410109 tgttttgattcaccttgaaca 25410129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 140 - 241
Target Start/End: Original strand, 21369539 - 21369641
Alignment:
140 gtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttga 238  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| || ||||||||| |||||||| ||||||||||||||||||||||||||||||    
21369539 gtagaaaacagggtttagaagccaacatacaaactagggtttatagagaaattctcttggcaacaaacattagggttgagattgttttgattcaccttga 21369638  T
239 aca 241  Q
    |||    
21369639 aca 21369641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 34547166 - 34547046
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||    
34547166 tatcagatgataaagtgtgtagaaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttggga 34547068  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
34547067 ttgttttgattcaccttgaaca 34547046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 132 - 241
Target Start/End: Complemental strand, 8378797 - 8378687
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||| ||||||||||||    
8378797 aaaagtgtgtagaaaaacaaggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaac-aactctagggttgggattgttttgat 8378699  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
8378698 tcaccttgaaca 8378687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 133 - 241
Target Start/End: Complemental strand, 44144157 - 44144049
Alignment:
133 aaagtgcgtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattc 231  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||| ||| ||||||||||||  ||||||||||||||    
44144157 aaagtgtgtagaaaacaaggtttagaagccaacatacaaactagggtttatagagaatttttcttggcaac-aacactagggttatgattgttttgattc 44144059  T
232 accttgaaca 241  Q
    ||||||||||    
44144058 accttgaaca 44144049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 6067503 - 6067383
Alignment:
122 tatcatatgaaaaagtgcgtagaaaacaaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagatt 221  Q
    ||||| ||||||| ||| | |||||||| ||||||||| |||||| ||||||||||||||||||| | ||||||||| ||||||||||||||||| ||||    
6067503 tatcagatgaaaacgtgtgaagaaaacatggtttagaagccaacaaacaaactagggtttatagagaattctcttggtaacaaacactagggttgggatt 6067404  T
222 g-ttttgattcaccttgaaca 241  Q
    | |||||||||||||||||||    
6067403 gtttttgattcaccttgaaca 6067383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 44011035 - 44010933
Alignment:
140 gtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttga 238  Q
    |||||||||| ||||||||| ||||||||||||||| |||||||||| ||||| |||||| ||||||||||||||||| |||||||||||| ||||||||    
44011035 gtagaaaacagggtttagaagccaacatacaaactatggtttatagagaatttttcttggcaacaaacactagggttgggattgttttgatccaccttga 44010936  T
239 aca 241  Q
    |||    
44010935 aca 44010933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 241
Target Start/End: Complemental strand, 7464815 - 7464701
Alignment:
128 atgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttt 225  Q
    |||| |||||| |||||||| || |||||| || |||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||  ||||||||    
7464815 atgataaagtgtgtagaaaaacagggtttaaaagccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggtttggattgttt 7464717  T
226 tgattcaccttgaaca 241  Q
    ||||||||||||||||    
7464716 tgattcaccttgaaca 7464701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 128 - 241
Target Start/End: Complemental strand, 44512822 - 44512708
Alignment:
128 atgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacacta-gggttgagattgttt 225  Q
    |||| |||||| |||||||| || |||||||||||||||||||||||||||||||||||| | || |||| | ||| ||||||| |||||| ||||||||    
44512822 atgataaagtgtgtagaaaaacagggtttagaaaccaacatacaaactagggtttatagagaattttctttgcaac-aacactaggggttgggattgttt 44512724  T
226 tgattcaccttgaaca 241  Q
    ||||||||||||||||    
44512723 tgattcaccttgaaca 44512708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 241
Target Start/End: Original strand, 42006565 - 42006662
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttatagaaa-tttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    |||||| ||||||||| |||||| |||||||| |||||||||||| |||||||||| || || ||||||||||| ||||||||||||||||||||||||    
42006565 aaaacagggtttagaagccaacaaacaaactatggtttatagaaaatttctcttggcaagaa-cactagggttgggattgttttgattcaccttgaaca 42006662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 1099697 - 1099617
Alignment:
161 ccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    |||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||| ||||||||||||||| |||||||    
1099697 ccaacatacaaactagggtttatagagaatttctcttggcaacaa-cactagggttgaaattgttttgattcacgttgaaca 1099617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 7069671 - 7069779
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||  |||||| ||||||||||||||||||| ||| |||||||| ||||| | ||||||||| ||||||||||||    
7069671 aaaagtgtgtagaaaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttggcaacaa-ctctagggttgggattgttttgat 7069767  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
7069768 tcaccttgaaca 7069779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 7074678 - 7074786
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||  |||||| ||||||||||||||||||| ||| |||||||| ||||| | ||||||||| ||||||||||||    
7074678 aaaagtgtgtagaaaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttggcaacaa-ctctagggttgggattgttttgat 7074774  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
7074775 tcaccttgaaca 7074786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 241
Target Start/End: Complemental strand, 15541286 - 15541178
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||  |||||| ||||||||||||||||||| ||| |||||||| ||||| | ||||||||| ||||||||||||    
15541286 aaaagtgtgtagaaaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttggcaacaa-ctctagggttgggattgttttgat 15541190  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
15541189 tcaccttgaaca 15541178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 25405284 - 25405392
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||  |||||| ||||||||||||||||||| ||| |||||||| ||||| | ||||||||| ||||||||||||    
25405284 aaaagtgtgtagaaaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttggcaacaa-ctctagggttgggattgttttgat 25405380  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
25405381 tcaccttgaaca 25405392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 2120800 - 2120894
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgtt-ttgattcaccttg 237  Q
    |||||||||||||||| |||||||||||||||||||||||||| | |||||||||| ||| ||| ||||||||| ||||||| |||||||||||||    
2120800 aaaacaaggtttagaagccaacatacaaactagggtttatagagattttctcttggcaac-aactctagggttgggattgttgttgattcaccttg 2120894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 144 - 241
Target Start/End: Original strand, 30246872 - 30246969
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    |||||| ||||||||| ||||||   ||||||||||||||||| |||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||    
30246872 aaaacagggtttagaagccaacaacaaaactagggtttatagagaatttctcttggcaacaa-cactacggttgggattgttttgattcaccttgaaca 30246969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 132 - 241
Target Start/End: Complemental strand, 3320341 - 3320233
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||   ||||| ||||||||||||||||||| ||| ||| |||| ||||| | ||||||||| ||||||||||||    
3320341 aaaagtgtgtagaaaaacaaggtttagat--caacaaacaaactagggtttatagagaatctctattggcaacaa-ctctagggttgggattgttttgat 3320245  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
3320244 tcaccttgaaca 3320233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 132 - 241
Target Start/End: Complemental strand, 3325089 - 3324981
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||   ||||| ||||||||||||||||||| ||| ||| |||| ||||| | ||||||||| ||||||||||||    
3325089 aaaagtgtgtagaaaaacaaggtttagat--caacaaacaaactagggtttatagagaatctctattggcaacaa-ctctagggttgggattgttttgat 3324993  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
3324992 tcaccttgaaca 3324981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 11081520 - 11081600
Alignment:
143 gaaaacaagg-tttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattg 222  Q
    |||||||||| ||||||| ||||||   |||||||||||| |||| | ||||||||| |||||||||||||||||||||||    
11081520 gaaaacaagggtttagaagccaacaacaaaactagggtttgtagagaattctcttggcaacaaacactagggttgagattg 11081600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 11084417 - 11084469
Alignment:
170 aaactagggtttatagaaatttctcttgggaacaaacactagggttgagattg 222  Q
    |||||||||||| |||||| ||||||||| |||||||| ||||||||||||||    
11084417 aaactagggtttgtagaaaattctcttggcaacaaacaatagggttgagattg 11084469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 45366544 - 45366619
Alignment:
145 aaacaaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagatt 221  Q
    |||||||||||||||  ||||| ||||||||| |||||||||  ||||| |||| ||||||||||||||||| ||||    
45366544 aaacaaggtttagaagtcaaca-acaaactagagtttatagagttttcttttggcaacaaacactagggttgtgatt 45366619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 1099754 - 1099717
Alignment:
204 aacactagggttgagattgttttgattcaccttgaaca 241  Q
    |||||||||||||||||||||||||||||| |||||||    
1099754 aacactagggttgagattgttttgattcacgttgaaca 1099717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 6048882 - 6048963
Alignment:
142 agaaaacaagg-tttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattg 222  Q
    ||||||||||| ||||||| |||||||  |||||||||||| || | | ||||||||| ||||||||||||| ||| |||||    
6048882 agaaaacaagggtttagaagccaacatcaaaactagggtttgtaaagaattctcttggcaacaaacactaggtttgggattg 6048963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Original strand, 6332263 - 6332313
Alignment:
172 actagggtttatagaaatttctcttgggaacaaacactagggttgagattg 222  Q
    |||||||||||||||  || ||||||| ||||||||||||| |||||||||    
6332263 actagggtttatagagtttactcttggcaacaaacactaggattgagattg 6332313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 13290725 - 13290681
Alignment:
168 acaaactagggtttatagaaatttctcttgggaacaaacactagg 212  Q
    |||||||||||||| ||||  |||||||||| |||||||||||||    
13290725 acaaactagggtttgtagagttttctcttggcaacaaacactagg 13290681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 16489229 - 16489348
Alignment:
122 tatcatatgaaaaagtgcgtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagat 220  Q
    ||||| |||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||| |||||||||    
16489229 tatcagatgataaagtgtgtagaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaac-aacactaaggttgagat 16489327  T
221 tgttttgattcaccttgaaca 241  Q
    |||||||||||||||||||||    
16489328 tgttttgattcaccttgaaca 16489348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 16638706 - 16638826
Alignment:
122 tatcatatgaaaaagtgcgtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagat 220  Q
    ||||| ||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| | ||||||||||||||||| |||    
16638706 tatcagatgaaaaagtgtgtagaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctctttgcaacaaacactagggttgggat 16638805  T
221 tgttttgattcaccttgaaca 241  Q
    |||||||||||||||| ||||    
16638806 tgttttgattcaccttaaaca 16638826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 25699629 - 25699748
Alignment:
122 tatcatatgaaaaagtgcgtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagat 220  Q
    |||||||||| |||||| |||||||||| |||||| || |||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| |||    
25699629 tatcatatgataaagtgtgtagaaaacagggtttaaaagccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgggat 25699727  T
221 tgttttgattcaccttgaaca 241  Q
    |||||||||||||||||||||    
25699728 tgttttgattcaccttgaaca 25699748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 144 - 241
Target Start/End: Original strand, 15312218 - 15312315
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||    
15312218 aaaacaaggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgggattgttttgattcaccttgaaca 15312315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 140 - 241
Target Start/End: Original strand, 47566390 - 47566492
Alignment:
140 gtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttga 238  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||| ||||    
47566390 gtagaaaacagggtttagaagccaacatacaaactagggtttatagagaatttatcttggcaacaaacactagggttgagattgttttgattcacattga 47566489  T
239 aca 241  Q
    |||    
47566490 aca 47566492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 13072265 - 13072164
Alignment:
140 gtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttga 238  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||| | ||||||||||| |||||||||||||||||||||    
13072265 gtagaaaacaaggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaac-atcactagggttgggattgttttgattcaccttga 13072167  T
239 aca 241  Q
    |||    
13072166 aca 13072164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 144 - 241
Target Start/End: Original strand, 36769380 - 36769478
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    |||||||||||||||| |||||||||||||||||||||  ||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
36769380 aaaacaaggtttagaagccaacatacaaactagggtttgaagagaatttctcttggcaacaaacactagggttgggattgttttgattcaccttgaaca 36769478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 140 - 241
Target Start/End: Original strand, 36771293 - 36771395
Alignment:
140 gtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttga 238  Q
    |||||||| | ||||||||| |||||||||||||||||||||  ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
36771293 gtagaaaatagggtttagaagccaacatacaaactagggtttgaagagaatttctcttggcaacaaacactagggttgagattgttttgattcaccttga 36771392  T
239 aca 241  Q
    |||    
36771393 aca 36771395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 15831020 - 15831140
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttatag-aaatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || ||||||||||||||||||||||||||||||||||| |||||| |||||| ||| ||||||||||||| ||    
15831020 tatcagatgataaagtgtgtagaaaaacagggtttagaaaccaacatacaaactagggtttatagaaaatttttcttggcaac-aacactagggttggga 15831118  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
15831119 ttgttttgattcaccttgaaca 15831140  T

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Target: chr4; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 18586845 - 18586965
Alignment:
122 tatcatatgaaaaagtgcgtagaaaacaagg-tttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| ||||||||  ||| |||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||    
18586845 tatcagatgataaagtgtgtagaaaaatagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttggga 18586943  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
18586944 ttgttttgattcaccttgaaca 18586965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 31300303 - 31300423
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    |||||||||| |||||| |||||||| || ||||||||||||||||| |||||||||||||||||| |||||||||| | ||| ||||||||||||| ||    
31300303 tatcatatgataaagtgtgtagaaaaacagggtttagaaaccaacattcaaactagggtttatagagaatttctctttgcaac-aacactagggttggga 31300401  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
31300402 ttgttttgattcaccttgaaca 31300423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 4569974 - 4570093
Alignment:
122 tatcatatgaaaaagtgcgtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagat 220  Q
    ||||| |||| |||||| ||||||||||  |||||||| |||||||||||||||||||||||||| |||||||||||| ||| | ||||||||||| |||    
4569974 tatcagatgataaagtgtgtagaaaacagagtttagaagccaacatacaaactagggtttatagagaatttctcttggcaac-atcactagggttgggat 4570072  T
221 tgttttgattcaccttgaaca 241  Q
    |||||||||||||||||||||    
4570073 tgttttgattcaccttgaaca 4570093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 4556362 - 4556242
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || ||||||||||||||| |||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||    
4556362 tatcagatgataaagtgtgtagaaaaacagggtttagaaaccaacttacaaactagggtttatagagaatttctcttggcaac-aacactagggttggga 4556264  T
220 ttgttttgattcaccttgaaca 241  Q
    |||||| |||||||||||||||    
4556263 ttgtttcgattcaccttgaaca 4556242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 151 - 241
Target Start/End: Original strand, 8529176 - 8529266
Alignment:
151 ggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||| | ||||||||||| ||||||||||||||||||||||||    
8529176 ggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaac-accactagggttgggattgttttgattcaccttgaaca 8529266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 144 - 239
Target Start/End: Complemental strand, 32274181 - 32274087
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaa 239  Q
    |||||||||||||||| |||||| ||||||||| ||||||||| |||||| |||| |||||||||||| |||||||||||||||||||||||||||    
32274181 aaaacaaggtttagaagccaaca-acaaactagagtttatagagatttctattggcaacaaacactagagttgagattgttttgattcaccttgaa 32274087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 140 - 241
Target Start/End: Original strand, 4558208 - 4558310
Alignment:
140 gtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttga 238  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||| || | |  |||||||| |||||||    
4558208 gtagaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaaacactagggctgggttgtttttgatttaccttga 4558307  T
239 aca 241  Q
    |||    
4558308 aca 4558310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 144 - 241
Target Start/End: Original strand, 15316860 - 15316957
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||||||| | | ||||||||||||  ||||||||||||| ||||||||||    
15316860 aaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcagc-aacactagggttcggattgttttgatttaccttgaaca 15316957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 153 - 241
Target Start/End: Complemental strand, 25614191 - 25614103
Alignment:
153 tttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    ||||||| ||||||||||| ||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
25614191 tttagaagccaacatacaa-ctatggtttatagagaatttctcttggtaacaaacactagggttgagattgttttgattcacattgaaca 25614103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 26557664 - 26557737
Alignment:
168 acaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||    
26557664 acaaactagggtttatagagatttctcttggcaacaaacactagggttgggattgttttgattcaccttaaaca 26557737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 4884753 - 4884873
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || ||||||||| |||||||||||| ||||||||||||| |||||||||| | ||| |||||| ||| || ||    
4884753 tatcagatgataaagtgtgtagaaaaacagggtttagaagccaacatacaaattagggtttatagagaatttctctttgcaac-aacactgggggtggga 4884851  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
4884852 ttgttttgattcaccttgaaca 4884873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 16689243 - 16689123
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || ||||||||||||||||| |||||||||||||||||| |||||||||| | ||| ||| ||||| |||  |    
16689243 tatcagatgataaagtgtgtagaaaaacagggtttagaaaccaacattcaaactagggtttatagataatttctctttgcaac-aactctaggtttggaa 16689145  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
16689144 ttgttttgattcaccttgaaca 16689123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 11853440 - 11853548
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||  |||||| | ||||||||||||||||| ||| |||||||| ||||| | ||||||||||||||||||||||    
11853440 aaaagtgtgtagaaaaacaaggtttaga--ccaacaaataaactagggtttatagagaatctctcttggcaacaa-ctctagggttgagattgttttgat 11853536  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
11853537 tcaccttgaaca 11853548  T

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Target: chr4; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 151 - 237
Target Start/End: Complemental strand, 3982450 - 3982365
Alignment:
151 ggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattgttttgattcaccttg 237  Q
    |||| |||||| |||| ||||||||||||| ||||  ||||||||||| ||||||||||||||||||||||||||| ||||||||||    
3982450 ggttcagaaacaaaca-acaaactagggttcatagtgatttctcttggcaacaaacactagggttgagattgtttttattcaccttg 3982365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 144 - 241
Target Start/End: Original strand, 55822169 - 55822264
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    |||||||||||||||  |||||| ||||| ||||||||||||| ||| |||||||| ||||| | ||||||||| ||||||||||||||||||||||||    
55822169 aaaacaaggtttaga--ccaacaaacaaattagggtttatagagaatctctcttggcaacaa-ctctagggttgggattgttttgattcaccttgaaca 55822264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 144 - 238
Target Start/End: Complemental strand, 4874759 - 4874665
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattgttttgattcaccttga 238  Q
    |||||||||||||||| |||||| |||||||||| |||| ||| | |||||| |  |||||||||||| |||| | |||||||||||||||||||    
4874759 aaaacaaggtttagaagccaacaaacaaactaggatttaaagagaattctctagacaacaaacactagagttgggtttgttttgattcaccttga 4874665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 170 - 241
Target Start/End: Complemental strand, 7050511 - 7050440
Alignment:
170 aaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    ||||||||||||||||| |||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||    
7050511 aaactagggtttatagagaatttctcttggcaacaa-cactaaggttgtgattgttttgattcaccttgaaca 7050440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 10112925 - 10113005
Alignment:
143 gaaaacaagg-tttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattg 222  Q
    |||||||||| ||||||| |||||| | |||||||||||| ||||  || ||||||| |||||||||||||||||||||||    
10112925 gaaaacaagggtttagaagccaacacaaaaactagggtttgtagagtttgctcttggcaacaaacactagggttgagattg 10113005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 38208961 - 38208880
Alignment:
142 agaaaacaagg-tttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattg 222  Q
    ||||||||||| ||||||| |||||||   | |||| |||| |||||| ||||||||| |||||||||||||||||||||||    
38208961 agaaaacaagggtttagaagccaacatcatatctagcgtttgtagaaaattctcttggcaacaaacactagggttgagattg 38208880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 16186108 - 16186019
Alignment:
151 ggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    ||||||||||| |||| ||||||||||||||| ||| ||||||||  |    | |||||| ||||| ||||||||||||||||||||||||    
16186108 ggtttagaaacaaaca-acaaactagggtttagagagatttctctaagcgggagacactaaggttgggattgttttgattcaccttgaaca 16186019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 5337035 - 5336967
Alignment:
173 ctagggtttatagaaatttctcttgggaacaaacactag--ggttgagattgttttgattcaccttgaa 239  Q
    |||||||||||||| | |||| |||| |||||||||||   ||||||||||||||||| ||||||||||    
5337035 ctagggtttatagagaattctattggcaacaaacactatatggttgagattgttttgactcaccttgaa 5336967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 9022359 - 9022440
Alignment:
142 agaaaacaagg-tttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattg 222  Q
    ||||||||||| |||||||  ||||||  |||||||||||| |||| | ||||||||| ||||||||||| ||||| |||||    
9022359 agaaaacaagggtttagaagtcaacatcaaaactagggtttgtagagaattctcttggcaacaaacactatggttgggattg 9022440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 23001660 - 23001582
Alignment:
144 aaaacaaggtttagaaaccaac-atacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattg 222  Q
    ||||||||| |||||| ||||| ||| ||||||||||||||||| |||||| |||  ||||| ||||||| |||||||||    
23001660 aaaacaaggattagaagccaaccata-aaactagggtttatagagatttcttttgacaacaatcactaggattgagattg 23001582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 5516531 - 5516453
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattg 222  Q
    ||||||| | |||||| ||||||   ||| |||||||| |||| |||||| |||| ||||||||||||||||| |||||    
5516531 aaaacaaagcttagaatccaacaacaaaaatagggtttgtagagatttcttttggcaacaaacactagggttgggattg 5516453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 52043660 - 52043579
Alignment:
142 agaaaacaagg-tttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattg 222  Q
    ||||||||||| ||||||| |||||||  |||||| ||||| ||||  |||||||||  | ||||||||||||||| |||||    
52043660 agaaaacaagggtttagaagccaacatcaaaactaaggtttgtagagttttctcttgtcagcaaacactagggttgggattg 52043579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 47151169 - 47151090
Alignment:
143 gaaaacaagg-tttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattg 222  Q
    |||||||||| ||||||| |||||| | |||||| ||||||||||  || ||||||| ||| |||||||||||||| ||||    
47151169 gaaaacaagggtttagaagccaacaca-aaactaaggtttatagagtttgctcttggtaaccaacactagggttgaaattg 47151090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 19702147 - 19702045
Alignment:
140 gtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttga 238  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||    
19702147 gtagaaaacaaggtttagaagccaacatacaaactagcgtttatagagaatttctcttggcaacaaacactagggttgggattgttttgattcaccttga 19702048  T
239 aca 241  Q
    |||    
19702047 aca 19702045  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 17695154 - 17695034
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||| ||    
17695154 tatcagatgataaagtgtgtagaaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaacaaa-actagggttggga 17695056  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
17695055 ttgttttgattcaccttgaaca 17695034  T

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Target: chr6; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 25466202 - 25466082
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||| ||||||||    
25466202 tatcagatgataaagtgtgtagaaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaac-aacactaaggttgaga 25466104  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
25466103 ttgttttgattcaccttgaaca 25466082  T

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Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 22343104 - 22342984
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    |||||||||| |||||| |||||||| || ||||||||| |||||||||||||||||||||||||| ||| |||||||| ||| ||||||||||||||||    
22343104 tatcatatgataaagtgtgtagaaaaacagggtttagaagccaacatacaaactagggtttatagagaatctctcttggcaac-aacactagggttgaga 22343006  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||| ||||||||    
22343005 ttgttttgattcaacttgaaca 22342984  T

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Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 3577817 - 3577697
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || |||||| ||||||||||||||||||||||||||||| |||||||||| | ||| ||||||||||||| ||    
3577817 tatcagatgataaagtgtgtagaaaaacagggtttaaaaaccaacatacaaactagggtttatagagaatttctctttgcaac-aacactagggttggga 3577719  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
3577718 ttgttttgattcaccttgaaca 3577697  T

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Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 22352155 - 22352035
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || ||||||||| |||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||    
22352155 tatcagatgataaagtgtgtagaaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttggga 22352057  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||| ||||||||||||    
22352056 ttgttttgaatcaccttgaaca 22352035  T

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Target: chr6; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 13467766 - 13467646
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || ||||||||| |||||||||||||||||||||||||| ||||| |||| | ||| ||||||||||||| ||    
13467766 tatcaaatgataaagtgtgtagaaaaacagggtttagaagccaacatacaaactagggtttatagagaatttatctttgcaac-aacactagggttggga 13467668  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
13467667 ttgttttgattcaccttgaaca 13467646  T

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Target: chr6; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 141 - 241
Target Start/End: Original strand, 26643075 - 26643175
Alignment:
141 tagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaa 239  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||   || ||||||||||||| |||||||||||||||||| |||    
26643075 tagaaaacaaggtttagaagccaacatacaaactagggtttatagagaatttctcttgcccac-aacactagggttgggattgttttgattcacctcgaa 26643173  T
240 ca 241  Q
    ||    
26643174 ca 26643175  T

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Target: chr6; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 141 - 241
Target Start/End: Original strand, 26749041 - 26749141
Alignment:
141 tagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaa 239  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||   || ||||||||||||| |||||||||||||||||| |||    
26749041 tagaaaacaaggtttagaagccaacatacaaactagggtttatagagaatttctcttgcccac-aacactagggttgggattgttttgattcacctcgaa 26749139  T
240 ca 241  Q
    ||    
26749140 ca 26749141  T

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Target: chr6; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 239
Target Start/End: Complemental strand, 24542953 - 24542859
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaa 239  Q
    |||| ||||||||||| ||||||  ||||||| |||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
24542953 aaaataaggtttagaagccaacac-caaactatggtttatagagatttctcttggcaacaaacactagggttgggattgttttgattcaccttgaa 24542859  T

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Target: chr6; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 17035974 - 17036054
Alignment:
161 ccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    |||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||    
17035974 ccaacatacaaactagggtttatagagaatttctcttggcaacaa-cactagggttgggattgttttgattcaccttgaaca 17036054  T

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Target: chr6; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 25941524 - 25941643
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || ||||||||||||||||| |||||||||||| ||||| |||||||||||| ||||| | ||||||||| ||    
25941524 tatcagatgataaagtgtgtagaaaaacatggtttagaaaccaacattcaaactagggtt-atagagaatttctcttggtaacaa-ctctagggttggga 25941621  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
25941622 ttgttttgattcaccttgaaca 25941643  T

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Target: chr6; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 239
Target Start/End: Original strand, 33215712 - 33215824
Alignment:
128 atgaaaaagtgcgtagaaaacaag-gtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttt 225  Q
    |||| |||||| ||||||||  || |||||||| |||||||||||||||||||||||||| |||||||||| | ||||| ||||||||||| ||||||||    
33215712 atgataaagtgtgtagaaaaacagagtttagaagccaacatacaaactagggtttatagagaatttctctttgcaacaa-cactagggttgtgattgttt 33215810  T
226 tgattcaccttgaa 239  Q
    ||||||||||||||    
33215811 tgattcaccttgaa 33215824  T

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Target: chr6; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 13878618 - 13878726
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||  |||||| ||||||||||||||||||| ||| |||||||| ||||| | ||||||||| ||||||||||||    
13878618 aaaagtgtgtagaaaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttggcaacaa-ctctagggttgggattgttttgat 13878714  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
13878715 tcaccttgaaca 13878726  T

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Target: chr6; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 13883366 - 13883474
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||  |||||| ||||||||||||||||||| ||| |||||||| ||||| | ||||||||| ||||||||||||    
13883366 aaaagtgtgtagaaaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttggcaacaa-ctctagggttgggattgttttgat 13883462  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
13883463 tcaccttgaaca 13883474  T

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Target: chr6; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 16785810 - 16785918
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||  |||||| ||||||||||||||||||| ||| |||||||| ||||| | ||||||||| ||||||||||||    
16785810 aaaagtgtgtagaaaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttggcaacaa-ctctagggttgggattgttttgat 16785906  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
16785907 tcaccttgaaca 16785918  T

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Target: chr6; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 241
Target Start/End: Complemental strand, 31249005 - 31248897
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||  |||||| ||||||||||||||||||| ||| |||||||| ||||| | ||||||||| ||||||||||||    
31249005 aaaagtgtgtagaaaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttggcaacaa-ctctagggttgggattgttttgat 31248909  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
31248908 tcaccttgaaca 31248897  T

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Target: chr6; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 241
Target Start/End: Complemental strand, 35201617 - 35201509
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||  |||||| ||||||||||||||||||| ||| |||||||| ||||| | ||||||||| ||||||||||||    
35201617 aaaagtgtgtagaaaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttggcaacaa-ctctagggttgggattgttttgat 35201521  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
35201520 tcaccttgaaca 35201509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 26887502 - 26887407
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    |||||||||||||||  |||||| ||||||||||||||||||| ||| |||||||| ||||| | ||||||||| ||||||||||||||||||||||||    
26887502 aaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttggcaacaa-ctctagggttgggattgttttgattcaccttgaaca 26887407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 12166397 - 12166329
Alignment:
174 tagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    ||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||| |||||||    
12166397 tagggtttatagagaatttctcttggcaacaaacactagggttgggattgttttgattcacgttgaaca 12166329  T

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Target: chr6; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 22858231 - 22858150
Alignment:
142 agaaaacaagg-tttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattg 222  Q
    ||||||||||| ||||||| | |||| | |||||||||||| ||||| |||||||||| |||||||||||||||||||||||    
22858231 agaaaacaagggtttagaagctaacacaaaaactagggtttgtagaattttctcttggtaacaaacactagggttgagattg 22858150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 30445552 - 30445633
Alignment:
142 agaaaacaa-ggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattg 222  Q
    ||||||||| ||||||||| |||||||  |||||||||||| |||| | ||||||||| ||||||||||| |||||||||||    
30445552 agaaaacaatggtttagaagccaacattaaaactagggtttgtagataattctcttggcaacaaacactacggttgagattg 30445633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 5166099 - 5165999
Alignment:
140 gtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttga 238  Q
    |||||||||| ||||||||| ||||||||||| |||||||||||||| ||||||||  || ||  || |||||||||| || ||||||||||||| ||||    
5166099 gtagaaaacagggtttagaagccaacatacaagctagggtttatagagaatttctcaaggcaa-gaatactagggttggga-tgttttgattcactttga 5166002  T
239 aca 241  Q
    |||    
5166001 aca 5165999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 7293862 - 7293935
Alignment:
168 acaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    ||||||||||||| ||||| ||||||||||| || ||||||||||||||  ||||||||   ||||||||||||    
7293862 acaaactagggttcatagagatttctcttggtaagaaacactagggttggtattgttttcgctcaccttgaaca 7293935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 20526855 - 20526924
Alignment:
153 tttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattg 222  Q
    |||||||||||||| | ||||||||| || ||||  || ||||||  |||||||||||||||||||||||    
20526855 tttagaaaccaacacaaaaactaggggttgtagagtttgctcttgacaacaaacactagggttgagattg 20526924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 2267326 - 2267206
Alignment:
122 tatcatatgaaaaagtgcgtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagat 220  Q
    ||||| ||||| | ||| |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||    
2267326 tatcagatgaatatgtgtgtagaaaacatggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaaacactacggttgagat 2267227  T
221 tgttttgattcaccttgaaca 241  Q
    ||||||||||||| |||||||    
2267226 tgttttgattcacgttgaaca 2267206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 144 - 241
Target Start/End: Original strand, 28895404 - 28895501
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||    
28895404 aaaacaaggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaac-aactctagggttgagattgttttgattcaccttgaaca 28895501  T

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Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 140 - 241
Target Start/End: Original strand, 30423109 - 30423211
Alignment:
140 gtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttga 238  Q
    |||||||||| ||||||||| |||||| ||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||    
30423109 gtagaaaacagggtttagaagccaacaaacaaactagggtttatagagaatttctcttggcaacaaacactagggctgagattgttttgattcaccttga 30423208  T
239 aca 241  Q
    |||    
30423209 aca 30423211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 140 - 241
Target Start/End: Original strand, 33032552 - 33032653
Alignment:
140 gtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttga 238  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||    
33032552 gtagaaaacatggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgagattgttttgattcaccttga 33032650  T
239 aca 241  Q
    |||    
33032651 aca 33032653  T

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Target: chr8; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 144 - 241
Target Start/End: Original strand, 590696 - 590793
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||| |||||| ||||||||||||||||||||||||    
590696 aaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaac-aacacttgggttgggattgttttgattcaccttgaaca 590793  T

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Target: chr8; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 23179841 - 23179744
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    |||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||    
23179841 aaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgggattgttttgattcaccttgaaca 23179744  T

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Target: chr8; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 26268510 - 26268413
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    |||||||||||||||| || ||||||||||||||||||||||| |||||||||||| ||| |||||||| |||||||||||||||||||||||||||||    
26268510 aaaacaaggtttagaagcctacatacaaactagggtttatagagaatttctcttggcaac-aacactagagttgagattgttttgattcaccttgaaca 26268413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 9021410 - 9021290
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || |||||||||||||||||||||||||||||||||||| |||||||||| | ||| ||||||||||||  ||    
9021410 tatcagatgataaagtgtgtagaaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctctttgcaac-aacactagggttcgga 9021312  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
9021311 ttgttttgattcaccttgaaca 9021290  T

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Target: chr8; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 21033749 - 21033869
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || ||||||||| |||||||||||||||||||||||||| |||||||||||| ||| ||||||||| ||| ||    
21033749 tatcagatgataaagtgtgtagaaaaacagggtttagaagccaacatacaaactagggtttatagataatttctcttggcaac-aacactaggcttggga 21033847  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
21033848 ttgttttgattcaccttgaaca 21033869  T

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Target: chr8; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 29555088 - 29554968
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || ||||||||||||| ||||||||||||||||| |||| |||||||||||| ||||| ||||||||||| ||    
29555088 tatcagatgataaagtgtgtagaaaaacagggtttagaaaccatcatacaaactagggtttttagagaatttctcttggcaacaa-cactagggttggga 29554990  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
29554989 ttgttttgattcaccttgaaca 29554968  T

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Target: chr8; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 17799708 - 17799607
Alignment:
140 gtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttga 238  Q
    |||||||||| ||||||||| ||||||||||||||||| |||||||| ||||| ||| || ||| ||||||||||||| |||||||||||||||||||||    
17799708 gtagaaaacagggtttagaagccaacatacaaactaggatttatagagaatttgtctaggcaac-aacactagggttgggattgttttgattcaccttga 17799610  T
239 aca 241  Q
    |||    
17799609 aca 17799607  T

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Target: chr8; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 17847581 - 17847676
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaac 240  Q
    |||||||||||||||||  |||| |||||||| |||||||||| |||||||| || ||||||||||| ||||| |||||||||||||||||||||||    
17847581 aaaacaaggtttagaaatgaaca-acaaactaaggtttatagagatttctctaggcaacaaacactatggttgggattgttttgattcaccttgaac 17847676  T

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Target: chr8; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 28327799 - 28327907
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||  |||||| ||||||||||||||||||| ||| |||||||| ||||| | ||||||||| ||||||||||||    
28327799 aaaagtgtgtagaaaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttggcaacaa-ctctagggttgggattgttttgat 28327895  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
28327896 tcaccttgaaca 28327907  T

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Target: chr8; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 16752800 - 16752705
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    |||||||||||||||  |||||| ||||||||||||||||||| ||| |||||||| ||||| | ||||||||| ||||||||||||||||||||||||    
16752800 aaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttggcaacaa-ctctagggttgggattgttttgattcaccttgaaca 16752705  T

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Target: chr8; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 241
Target Start/End: Complemental strand, 4812778 - 4812670
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||  |||||| ||||||||||||| ||||| ||| |||||||| ||||| | ||||||||| ||||||||||||    
4812778 aaaagtgtgtagaaaaacaaggtttaga--ccaacaaacaaactagggttcatagagaatctctcttggcaacaa-ctctagggttgggattgttttgat 4812682  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
4812681 tcaccttgaaca 4812670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 25684534 - 25684642
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||  |||||| ||||||||||||||||||| ||| |||||| | ||||| | ||||||||| ||||||||||||    
25684534 aaaagtgtgtagaaaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttagcaacaa-ctctagggttgggattgttttgat 25684630  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
25684631 tcaccttgaaca 25684642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 16757545 - 16757450
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    |||||||||||||||  |||||| ||||||||||||||||||| ||| |||||||  ||||| | ||||||||| ||||||||||||||||||||||||    
16757545 aaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttgacaacaa-ctctagggttgggattgttttgattcaccttgaaca 16757450  T

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Target: chr8; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 15944775 - 15944869
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattgttttgattcaccttga 238  Q
    |||||| ||||||||| | |||| ||||| ||||||||||||| |  |||||||| ||||||||||||||||  ||||| |||||||||||||||    
15944775 aaaacagggtttagaagctaacaaacaaattagggtttatagagaaatctcttggcaacaaacactagggttctgattgctttgattcaccttga 15944869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 241
Target Start/End: Original strand, 15949436 - 15949533
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    |||||| |||||| || |||||| ||||||||||||||| ||| | |||||||   ||||||||||||| ||| |||||||| |||||||||||||||    
15949436 aaaacagggtttaaaagccaacacacaaactagggtttacagagaattctctttacaacaaacactaggtttgtgattgtttggattcaccttgaaca 15949533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 28332522 - 28332630
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||  |||| | ||||||||||||||||| | ||| |||||||| ||||| | ||||||||| ||||||||||||    
28332522 aaaagtgtgtagaaaaacaaggtttaga--ccaataaacaaactagggtttataaagaatctctcttggtaacaa-ctctagggttgggattgttttgat 28332618  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
28332619 tcaccttgaaca 28332630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 241
Target Start/End: Original strand, 3276229 - 3276343
Alignment:
128 atgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttt 225  Q
    |||| |||||| |||||||| || ||||||||| |||||| | ||||||||||||||||| ||||| |||| | ||| ||| | ||||||| ||||||||    
3276229 atgataaagtgtgtagaaaaacagggtttagaagccaacacaaaaactagggtttatagagaatttttctttgcaac-aactccagggttgggattgttt 3276327  T
226 tgattcaccttgaaca 241  Q
    ||||| ||||||||||    
3276328 tgatttaccttgaaca 3276343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 152 - 241
Target Start/End: Complemental strand, 33021170 - 33021080
Alignment:
152 gtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaaca---ctagggttgagattgttttgattcaccttgaaca 241  Q
    |||||||||| |||| |||||||||| |||||| | ||||||||| | ||||||||   ||||| ||||||||||||||||||||||||||||    
33021170 gtttagaaacaaaca-acaaactagg-tttatatagatttctcttagcaacaaacaacactaggattgagattgttttgattcaccttgaaca 33021080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 241
Target Start/End: Original strand, 28228416 - 28228513
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    |||||| |||||||||  ||||| | |||||| |||||||||| | |||| |||| ||||||||||| ||||   | |||| | ||||||||||||||    
28228416 aaaacatggtttagaaggcaacaaataaactaaggtttatagagaattcttttggcaacaaacactatggttagaactgttgttattcaccttgaaca 28228513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 31573995 - 31573922
Alignment:
149 aaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattg 222  Q
    ||||||||||| ||||||   |||||||| ||| ||||  |||||||||| ||||||||||| ||||| |||||    
31573995 aaggtttagaagccaacacgaaaactaggatttgtagagttttctcttggcaacaaacactatggttgggattg 31573922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 13893341 - 13893461
Alignment:
122 tatcatatgaaaaagtgcgtagaaaacaaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagatt 221  Q
    ||||| ||||||||||| ||||||||||||||||||||  ||||||| ||||||||||||||||| | ||||||||| ||||||||||||||||| ||||    
13893341 tatcaaatgaaaaagtgtgtagaaaacaaggtttagaagtcaacataaaaactagggtttatagagaattctcttggcaacaaacactagggttgggatt 13893440  T
222 g-ttttgattcaccttgaaca 241  Q
    | |||||||||||||||||||    
13893441 gtttttgattcaccttgaaca 13893461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 5858425 - 5858545
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||    
5858425 tatcagatgataaagtgtgtagaaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttggga 5858523  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
5858524 ttgttttgattcaccttgaaca 5858545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 10613081 - 10612961
Alignment:
122 tatcatatgaaaaagtgcgtagaaaacaagg-tttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    |||||||||| |||||| ||||||||  ||| |||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||    
10613081 tatcatatgataaagtgtgtagaaaaatagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttggga 10612983  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
10612982 ttgttttgattcaccttgaaca 10612961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 47878474 - 47878354
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||    
47878474 tatcagatgataaagtgtgtagaaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttggga 47878376  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
47878375 ttgttttgattcaccttgaaca 47878354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 10896884 - 10897004
Alignment:
122 tatcatatgaaaaagtgcgtagaaaacaagg-tttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| ||||||||  ||| |||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||    
10896884 tatcagatgataaagtgtgtagaaaaatagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttggga 10896982  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
10896983 ttgttttgattcaccttgaaca 10897004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 142 - 241
Target Start/End: Original strand, 3329792 - 3329892
Alignment:
142 agaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaac 240  Q
    |||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| || |||||||||||||| || ||||||||||||||||||||    
3329792 agaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaataaacactagggttgggaatgttttgattcaccttgaac 3329891  T
241 a 241  Q
    |    
3329892 a 3329892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 27762287 - 27762169
Alignment:
122 tatcatatgaaaaagtgcgtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagat 220  Q
    ||||| |||| |||||| ||||||| || ||||||||| |||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||    
27762287 tatcagatgataaagtgtgtagaaa-cagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaacaa-cactagggttgagat 27762190  T
221 tgttttgattcaccttgaaca 241  Q
    |||||||||||||||| ||||    
27762189 tgttttgattcaccttaaaca 27762169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 47883184 - 47883065
Alignment:
122 tatcatatgaaaaagtgcgtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagat 220  Q
    ||||| |||| |||||| |||||||||| | ||||||| |||||||||||||||||||||||||| |||||||||||| ||| ||||||| ||||| |||    
47883184 tatcagatgataaagtgtgtagaaaacaggatttagaagccaacatacaaactagggtttatagataatttctcttggcaac-aacactatggttgggat 47883086  T
221 tgttttgattcaccttgaaca 241  Q
    |||||||||||||||||||||    
47883085 tgttttgattcaccttgaaca 47883065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 140 - 241
Target Start/End: Original strand, 38002767 - 38002868
Alignment:
140 gtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttga 238  Q
    |||||||||| | |||||||  ||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||    
38002767 gtagaaaacaggatttagaagtcaacatacaaactagggtttatagagaatttctcttggcaacaa-cactagggttgagattgttttgattcaccttga 38002865  T
239 aca 241  Q
    |||    
38002866 aca 38002868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 54193104 - 54193225
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||    
54193104 tatcagatgataaagtgtgtagaaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttggga 54193202  T
220 ttg-ttttgattcaccttgaaca 241  Q
    ||| |||||||||||||||||||    
54193203 ttgtttttgattcaccttgaaca 54193225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 22626287 - 22626167
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || ||||||||||||||||||||||||||||||||| || |||||||||||| ||| ||| ||||||||| ||    
22626287 tatcagatgataaagtgtgtagaaaaacagggtttagaaaccaacatacaaactagggtttatggagaatttctcttggcaac-aactctagggttggga 22626189  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
22626188 ttgttttgattcaccttgaaca 22626167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 10949561 - 10949443
Alignment:
122 tatcatatgaaaaagtgcgtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagat 220  Q
    ||||| |||| |||||| |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||  |||    
10949561 tatcagatgataaagtgtgtagaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaac-aactctagggtt-cgat 10949464  T
221 tgttttgattcaccttgaaca 241  Q
    |||||||||||||||||||||    
10949463 tgttttgattcaccttgaaca 10949443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 135 - 241
Target Start/End: Complemental strand, 10595323 - 10595217
Alignment:
135 agtgcgtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcac 233  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||| ||| ||||||||||||  ||||||||||||||||    
10595323 agtgtgtagaaaaaaaggtttagaaaccaacatacaaactagggtttatagagaatttatcttggcaac-aacactagggtttggattgttttgattcac 10595225  T
234 cttgaaca 241  Q
    | ||||||    
10595224 catgaaca 10595217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 132 - 241
Target Start/End: Complemental strand, 29914246 - 29914136
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| || ||||||||| ||||||| |||||||||||||||||| |||||||||||| ||||| ||||||||||| ||||||||||||    
29914246 aaaagtgtgtagaaaaacagggtttagaagccaacattcaaactagggtttatagagaatttctcttggcaacaa-cactagggttgggattgttttgat 29914148  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
29914147 tcaccttgaaca 29914136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 15823889 - 15823793
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    |||||||||||| ||| |||||| |||||||||||||||||||  |||||||| | |||||||||||||| |||||||||||||||||||||||||||    
15823889 aaaacaaggtttggaagccaaca-acaaactagggtttatagagttttctctttgaaacaaacactagggctgagattgttttgattcaccttgaaca 15823793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 11079397 - 11079516
Alignment:
122 tatcatatgaaaaagtgcgtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagat 220  Q
    ||||| |||| |||||| ||| | | || ||||||||| |||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| |||    
11079397 tatcagatgataaagtgtgtatatagcagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgggat 11079495  T
221 tgttttgattcaccttgaaca 241  Q
    |||||||||||| ||||||||    
11079496 tgttttgattcatcttgaaca 11079516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 16462092 - 16462202
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| | ||| |||  |||||||| ||||||||||||    
16462092 aaaagtgtgtagaaaaacaaggtttagaaaccaacatacaaactagggtttacagagaatttctcttagcaac-aactatagggttgggattgttttgat 16462190  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
16462191 tcaccttgaaca 16462202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 4535493 - 4535613
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || ||||||||| |||||||||||||||||||| ||||| |||||||||||| ||| ||||||||||||| |     
4535493 tatcagatgataaagtgtgtagaaaaacagggtttagaagccaacatacaaactagggttcatagagaatttctcttggcaac-aacactagggttgggt 4535591  T
220 ttgttttgattcaccttgaaca 241  Q
    |||||||||||||| |||||||    
4535592 ttgttttgattcactttgaaca 4535613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 237
Target Start/End: Original strand, 26762941 - 26763033
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattgttttgattcaccttg 237  Q
    |||||| ||||||||||| |||| |||||||||| |||||||| ||||||| ||||||||||||||||||||| ||||| ||||||||||||||    
26762941 aaaacagggtttagaaacgaaca-acaaactaggatttatagagatttctcctgggaacaaacactagggttgtgattgatttgattcaccttg 26763033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 144 - 241
Target Start/End: Original strand, 54188410 - 54188508
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattg-ttttgattcaccttgaaca 241  Q
    |||||| ||||||||||||||||||||||||| |||||||||| |||||||||||| ||| ||||||||| ||| ||||| |||||||||||||||||||    
54188410 aaaacagggtttagaaaccaacatacaaactaaggtttatagagaatttctcttggcaac-aacactaggtttgggattgtttttgattcaccttgaaca 54188508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 6303201 - 6303309
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||  |||||| ||||||||||||||||||| ||| |||||||| ||||| | ||||||||| ||||||||||||    
6303201 aaaagtgtgtagaaaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttggcaacaa-ctctagggttgggattgttttgat 6303297  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
6303298 tcaccttgaaca 6303309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 241
Target Start/End: Complemental strand, 10094365 - 10094257
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||  |||||| ||||||||||||||||||| ||| |||||||| ||||| | ||||||||| ||||||||||||    
10094365 aaaagtgtgtagaaaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttggcaacaa-ctctagggttgggattgttttgat 10094269  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
10094268 tcaccttgaaca 10094257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 241
Target Start/End: Complemental strand, 10100382 - 10100274
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||  |||||| ||||||||||||||||||| ||| |||||||| ||||| | ||||||||| ||||||||||||    
10100382 aaaagtgtgtagaaaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttggcaacaa-ctctagggttgggattgttttgat 10100286  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
10100285 tcaccttgaaca 10100274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 241
Target Start/End: Complemental strand, 10201245 - 10201137
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||  |||||| ||||||||||||||||||| ||| |||||||| ||||| | ||||||||| ||||||||||||    
10201245 aaaagtgtgtagaaaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttggcaacaa-ctctagggttgggattgttttgat 10201149  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
10201148 tcaccttgaaca 10201137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 241
Target Start/End: Complemental strand, 10208291 - 10208183
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||  |||||| ||||||||||||||||||| ||| |||||||| ||||| | ||||||||| ||||||||||||    
10208291 aaaagtgtgtagaaaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttggcaacaa-ctctagggttgggattgttttgat 10208195  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
10208194 tcaccttgaaca 10208183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 235
Target Start/End: Original strand, 16996780 - 16996868
Alignment:
147 acaaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattgttttgattcacct 235  Q
    ||||||||||||| |||||| ||||||||||||||||||| | ||||||||| || ||||||||||||||  | |||||||||||||||    
16996780 acaaggtttagaagccaacaaacaaactagggtttatagagaattctcttggtaataaacactagggttggaaatgttttgattcacct 16996868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 144 - 241
Target Start/End: Original strand, 27544177 - 27544272
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    |||||||||||||||  |||||| ||||||||||||||||||| ||| |||||||| ||||| | ||||||||| ||||||||||||||||||||||||    
27544177 aaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttggcaacaa-ctctagggttgggattgttttgattcaccttgaaca 27544272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 20031574 - 20031501
Alignment:
168 acaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    |||||||||| |||||||| |||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||    
20031574 acaaactaggctttatagagaatttctcttggcaacaa-cactagggttgggattgttttgattcaccttgaaca 20031501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 27703450 - 27703353
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggttta-tagaaatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    |||||||||||||||| | |||| | ||||||||||||  |||| ||||||||||| | ||||||||||| ||  ||||||||||||||||||||||||    
27703450 aaaacaaggtttagaagcaaaca-agaaactagggttttgtagagatttctcttggcatcaaacactaggatttggattgttttgattcaccttgaaca 27703353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 46966921 - 46966831
Alignment:
151 ggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    ||||||||| ||||||   ||| || |||||||||| ||| ||||||| |||||||||||||||||||||||||| |||||| ||| ||||    
46966921 ggtttagaagccaacaacaaaattaaggtttatagagattcctcttggcaacaaacactagggttgagattgtttcgattcatcttaaaca 46966831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 48390523 - 48390445
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgg 198  Q
    ||||| |||| |||||| |||||||| || ||||||||| || ||||||||||||||||||||||| ||||||||||||    
48390523 tatcagatgataaagtgtgtagaaaaacagggtttagaagccgacatacaaactagggtttatagagaatttctcttgg 48390445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 42297876 - 42297839
Alignment:
204 aacactagggttgagattgttttgattcaccttgaaca 241  Q
    ||||||||| ||||||||||||||||||||||||||||    
42297876 aacactaggattgagattgttttgattcaccttgaaca 42297839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 198
Target Start/End: Original strand, 7417967 - 7418026
Alignment:
140 gtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgg 198  Q
    |||||||||  ||||||||| |||||||| ||||||||||||||| | ||||||||||||    
7417967 gtagaaaacggggtttagaagccaacataaaaactagggtttataaagaatttctcttgg 7418026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 1618934 - 1618882
Alignment:
143 gaaaacaagg-tttagaaaccaacatacaaactagggtttatagaaatttctct 195  Q
    |||||||||| ||||||||| |||| ||||||||||||||||||| ||||||||    
1618934 gaaaacaagggtttagaaacaaaca-acaaactagggtttatagagatttctct 1618882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 222
Target Start/End: Original strand, 13419870 - 13419943
Alignment:
149 aaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattg 222  Q
    |||||||| || ||||||   |||||||||||| ||||  || ||||||| ||||||||||||||||| |||||    
13419870 aaggtttaaaagccaacaagaaaactagggtttgtagagtttgctcttggcaacaaacactagggttgggattg 13419943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 188545 - 188425
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||    
188545 tatcagatgataaagtgtgtagaaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttggga 188447  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
188446 ttgttttgattcaccttgaaca 188425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 35894564 - 35894444
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||    
35894564 tatcagatgataaagtgtgtagaaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttggga 35894466  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
35894465 ttgttttgattcaccttgaaca 35894444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 12781523 - 12781404
Alignment:
122 tatcatatgaaaaagtgcgtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagat 220  Q
    ||||| |||| |||||| |||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||| ||| ||||||||||||| |||    
12781523 tatcagatgataaagtgtgtagaaaacagggtttagaaaccaacattcaaactagggtttatagagaatttctcttggcaac-aacactagggttgggat 12781425  T
221 tgttttgattcaccttgaaca 241  Q
    |||||||||||||||| ||||    
12781424 tgttttgattcaccttaaaca 12781404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 38190877 - 38190996
Alignment:
122 tatcatatgaaaaagtgcgtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagat 220  Q
    ||||| |||| |||||| |||||||||| ||||||||| |||||||||||||||||||||||| | |||||||||||| ||| ||||||||||||| |||    
38190877 tatcagatgataaagtgtgtagaaaacagggtttagaagccaacatacaaactagggtttataaataatttctcttggcaac-aacactagggttgggat 38190975  T
221 tgttttgattcaccttgaaca 241  Q
    |||||||||||||||||||||    
38190976 tgttttgattcaccttgaaca 38190996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 22712819 - 22712699
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||| ||    
22712819 tatcagatgataaagtgtgtagaaaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaac-aactctagggttggga 22712721  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
22712720 ttgttttgattcaccttgaaca 22712699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 30478873 - 30478993
Alignment:
122 tatcatatgaaaaagtgcgtagaaaacaag-gtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| ||||||||  || ||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||    
30478873 tatcagatgataaagtgtgtagaaaaacagagtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttggga 30478971  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
30478972 ttgttttgattcaccttgaaca 30478993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 17932523 - 17932633
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| || |||||| ||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||    
17932523 aaaagtgtgtagaaaaacagggtttataaaccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgggattgttttgat 17932621  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
17932622 tcaccttgaaca 17932633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 27517919 - 27517822
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||||| | ||| ||||||||||||| ||||||||||||||||||||||||    
27517919 aaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctctttgcaac-aacactagggttgggattgttttgattcaccttgaaca 27517822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 241
Target Start/End: Original strand, 17943417 - 17943536
Alignment:
122 tatcatatgaaaaagtgcgtagaaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagat 220  Q
    ||||| |||| || ||| |||||||| | ||||||||| ||||||||||||||| |||||||||| |||||||||||| ||||| ||||||||||| |||    
17943417 tatcagatgataaggtgtgtagaaaatagggtttagaagccaacatacaaactatggtttatagagaatttctcttggcaacaa-cactagggttgggat 17943515  T
221 tgttttgattcaccttgaaca 241  Q
    |||||||||||||||||||||    
17943516 tgttttgattcaccttgaaca 17943536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 132 - 241
Target Start/End: Complemental strand, 33674698 - 33674588
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| || |||||||||||||||||| |||||| |||||||||| |||||||||||| ||||| ||||||||||| ||||||||||||    
33674698 aaaagtgtgtagaaaaacagggtttagaaaccaacatataaactatggtttatagagaatttctcttggcaacaa-cactagggttgggattgttttgat 33674600  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
33674599 tcaccttgaaca 33674588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 20050325 - 20050205
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttatag-aaatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || ||| ||||||||||||||||||||||||||||||| ||||||||||| | ||| ||| ||||||||| ||    
20050325 tatcagatgataaagtgtgtagaaaaacagggtatagaaaccaacatacaaactagggtttatagaaaatttctctttgcaac-aactctagggttggga 20050227  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
20050226 ttgttttgattcaccttgaaca 20050205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 144 - 241
Target Start/End: Original strand, 33603897 - 33603993
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    |||||| ||||||||||| |||| ||||||||||||||||||| |||||| |||| |||||||| |||||||| ||||||||||||||||||||||||    
33603897 aaaacatggtttagaaacaaaca-acaaactagggtttatagagatttcttttggcaacaaacattagggttgggattgttttgattcaccttgaaca 33603993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 37171055 - 37170935
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || ||||||||| |||||||||||||||||||||||||| |||||||||||| ||| ||||| ||||||| ||    
37171055 tatcagatgataaagtgtgtagaaaaacagggtttagaagccaacatacaaactagggtttatagagaatttctcttggcaac-aacaccagggttggga 37170957  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||| ||||||||||||    
37170956 ttgttttgaatcaccttgaaca 37170935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 132 - 241
Target Start/End: Complemental strand, 22717518 - 22717408
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||| | ||| |||  |||||||| ||||||||||||    
22717518 aaaagtgtgtagaaaaacaaggtttagaaaccaacatacaaactagggtttacagagaatttctcttagcaac-aactatagggttgggattgttttgat 22717420  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
22717419 tcaccttgaaca 22717408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 20055068 - 20054948
Alignment:
122 tatcatatgaaaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgaga 219  Q
    ||||| |||| |||||| |||||||| || ||| ||||||||||||||||||||| |||||||||| |||||||||| | ||| ||| ||||||||| ||    
20055068 tatcagatgataaagtgtgtagaaaaacagggtatagaaaccaacatacaaactaaggtttatagagaatttctctttgcaac-aactctagggttggga 20054970  T
220 ttgttttgattcaccttgaaca 241  Q
    ||||||||||||||||||||||    
20054969 ttgttttgattcaccttgaaca 20054948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 144 - 235
Target Start/End: Complemental strand, 30262052 - 30261962
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattgttttgattcacct 235  Q
    |||||| ||||||||| |||||| |||||||| ||||||||||  |||||||||| || |||||||||||||||||||||||||||||||||    
30262052 aaaacatggtttagaagccaaca-acaaactacggtttatagagttttctcttggcaataaacactagggttgagattgttttgattcacct 30261962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 17462327 - 17462435
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||  |||||| ||||||||||||||||||| ||| |||||||| ||||| | ||||||||| ||||||||||||    
17462327 aaaagtgtgtagaaaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttggcaacaa-ctctagggttgggattgttttgat 17462423  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
17462424 tcaccttgaaca 17462435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 39686874 - 39686982
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||  |||||| ||||||||||||||||||| ||| |||||||| ||||| | ||||||||| ||||||||||||    
39686874 aaaagtgtgtagaaaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttggcaacaa-ctctagggttgggattgttttgat 39686970  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
39686971 tcaccttgaaca 39686982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 45567300 - 45567408
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||  |||||| ||||||||||||||||||| ||| |||||||| ||||| | ||||||||| ||||||||||||    
45567300 aaaagtgtgtagaaaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttggcaacaa-ctctagggttgggattgttttgat 45567396  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
45567397 tcaccttgaaca 45567408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 2736096 - 2736204
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||  |||||| ||||||||||||||||||| ||| |||||||| ||||| | ||||||||| ||||||||||||    
2736096 aaaagtgtgtagaaaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttggcaacaa-ctctagggttgggattgttttgat 2736192  T
230 tcaccttgaaca 241  Q
    |||| |||||||    
2736193 tcacattgaaca 2736204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 2740832 - 2740940
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||  |||||| ||||||||||||||||||| ||| |||||||| ||||| | ||||||||| ||||||||||||    
2740832 aaaagtgtgtagaaaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttggcaacaa-ctctagggttgggattgttttgat 2740928  T
230 tcaccttgaaca 241  Q
    |||| |||||||    
2740929 tcacattgaaca 2740940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 39679936 - 39680044
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||  |||||||| ||||||||||||||||||| ||| ||| |||| ||||| | ||||||||| ||||||||||||    
39679936 aaaagtgtgtagaaaaacaaggttta--aaccaacaaacaaactagggtttatagagaatctcttttggcaacaa-ctctagggttgggattgttttgat 39680032  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
39680033 tcaccttgaaca 39680044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 26345575 - 26345653
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattg 222  Q
    ||||||||| |||||| ||||||   |||||||| ||| |||| ||||||||||| |||||||| ||||||||||||||    
26345575 aaaacaaggattagaagccaacaacaaaactaggatttgtagagatttctcttggtaacaaacattagggttgagattg 26345653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 43139354 - 43139434
Alignment:
143 gaaaacaagg-tttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattg 222  Q
    |||||||||| ||||||| |||||| | ||||| |||||| ||||  || ||||||| |||||||||||||||||||||||    
43139354 gaaaacaagggtttagaagccaacacaaaaacttgggtttgtagagtttgctcttggcaacaaacactagggttgagattg 43139434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 191 - 237
Target Start/End: Original strand, 45158257 - 45158303
Alignment:
191 tctcttgggaacaaacactagggttgagattgttttgattcaccttg 237  Q
    |||||||| |||||||| |||||||||||||||||||||||| ||||    
45158257 tctcttggaaacaaacattagggttgagattgttttgattcatcttg 45158303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 30720872 - 30720820
Alignment:
170 aaactagggtttatagaaatttctcttgggaacaaacactagggttgagattg 222  Q
    |||||||||||| |||| | ||||||||| | |||||||||||||||||||||    
30720872 aaactagggtttgtagagaattctcttggcaccaaacactagggttgagattg 30720820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 27248193 - 27248111
Alignment:
140 gtagaaaacaaggtttagaaaccaacatacaaa-ctagggtttatagaaatttctcttgggaacaaacactagggttgagattg 222  Q
    ||||||||||||| |||||| |||||| ||||| ||| ||||| |||| | ||||||||| ||||||||||| || ||||||||    
27248193 gtagaaaacaaggattagaagccaaca-acaaagctaaggtttgtagataattctcttggcaacaaacactacgggtgagattg 27248111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 35028556 - 35028634
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttgagattg 222  Q
    |||||| ||||||||| ||||||   ||| | |||||| ||||  || ||||||| |||||||||||||||||||||||    
35028556 aaaacagggtttagaatccaacaataaaatttgggtttgtagagtttgctcttggtaacaaacactagggttgagattg 35028634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 39287183 - 39287256
Alignment:
140 gtagaaaacaagg-tttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagg 212  Q
    ||||||||||||| ||||||| ||||||   |||||||||||| |||| | ||||||| | |||||||||||||    
39287183 gtagaaaacaagggtttagaagccaacaagaaaactagggtttgtagagaattctcttagcaacaaacactagg 39287256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 10942798 - 10942726
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttg 216  Q
    ||||||||| |||||| ||||||   | ||||||| || |||| | ||||||||| |||||||||||||||||    
10942798 aaaacaaggattagaagccaacaataatactagggattgtagagaattctcttggcaacaaacactagggttg 10942726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 10948667 - 10948595
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttatagaaatttctcttgggaacaaacactagggttg 216  Q
    ||||||||| |||||| ||||||   | ||||||| || |||| | ||||||||| |||||||||||||||||    
10948667 aaaacaaggattagaagccaacaataatactagggattgtagagaattctcttggcaacaaacactagggttg 10948595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 16214 - 16324
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| || ||||||||| ||||||| |||||||||||||||||| |||||||||||| ||||| ||||||||||| ||||||||||||    
16214 aaaagtgtgtagaaaaacagggtttagaagccaacattcaaactagggtttatagagaatttctcttggcaacaa-cactagggttgggattgttttgat 16312  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
16313 tcaccttgaaca 16324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 144 - 241
Target Start/End: Complemental strand, 17266 - 17169
Alignment:
144 aaaacaaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgattcaccttgaaca 241  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| |||||||||| |||| ||||||||    
17266 aaaacagggtttagaaaccaacatacaaactagggtttatagagaatttctcttggcaac-aacactagggttgggattgttttgtttcatcttgaaca 17169  T

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Target: scaffold0131 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 31032 - 31140
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||  |||||| ||||||||||||||||||| ||| |||||||| ||||| | ||||||||| ||||||||||||    
31032 aaaagtgtgtagaaaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttggcaacaa-ctctagggttgggattgttttgat 31128  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
31129 tcaccttgaaca 31140  T

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Target: scaffold0006 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 224710 - 224818
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctcttgggaacaaacactagggttgagattgttttgat 229  Q
    ||||||| |||||||| |||||||||||  |||||| ||||||||||||||||||| ||| |||||||| ||||| | ||||||||| ||||||||||||    
224710 aaaagtgtgtagaaaaacaaggtttaga--ccaacaaacaaactagggtttatagagaatctctcttggcaacaa-ctctagggttgggattgttttgat 224806  T
230 tcaccttgaaca 241  Q
    ||||||||||||    
224807 tcaccttgaaca 224818  T

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Target: scaffold1764 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold1764
Description:

Target: scaffold1764; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 1325 - 1391
Alignment:
132 aaaagtgcgtagaaaa-caaggtttagaaaccaacatacaaactagggtttataga-aatttctctt 196  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
1325 aaaagtgtgtagaaaaacaaggtttagaaaccaacatacaaactagggtttatagagaatttctctt 1391  T

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