View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4046_low_25 (Length: 235)
Name: NF4046_low_25
Description: NF4046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4046_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 6 - 221
Target Start/End: Original strand, 3127981 - 3128196
Alignment:
| Q |
6 |
agtatcataggctaccccagaccactagctgtcatgagtgtgactaatcaattttgactgatgagtaaataagccttgtgaaccaaaagcatgcgtaaaa |
105 |
Q |
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| T |
3127981 |
agtatcataggctaccccagaccactagctgtcatgagtgtgactaatcaattttgactgatgagtaaataagccttgtgaaccaaaagcatgcgtaaaa |
3128080 |
T |
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| Q |
106 |
tccaatggtgccggttacaacaaagaaggcatacgaagctataaacatgtaaccgaagtataatattgcagataccaacttcgtgatttcaagcttggtg |
205 |
Q |
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| T |
3128081 |
tccaatggtgccggttacaacaaagaaggcatacgaagctataaacatgtaaccgaagtataatattgcagataccaacttcgtgatttcaagcttggtg |
3128180 |
T |
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| Q |
206 |
aagaagtagaatgttg |
221 |
Q |
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| T |
3128181 |
aagaagtagaatgttg |
3128196 |
T |
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Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 48 - 221
Target Start/End: Original strand, 48856944 - 48857117
Alignment:
| Q |
48 |
actaatcaattttgactgatgagtaaataagccttgtgaaccaaaagcatgcgtaaaatccaatggtgccggttacaacaaagaaggcatacgaagctat |
147 |
Q |
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| T |
48856944 |
actaatcaattttgactgaggagtagatgagccttgtgaaccaaaagcatgcatagaatccaatagtaccggttaccacaaaaaacgcataagaagctat |
48857043 |
T |
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| Q |
148 |
aaacatgtaaccgaagtataatattgcagataccaacttcgtgatttcaagcttggtgaagaagtagaatgttg |
221 |
Q |
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| T |
48857044 |
aagcatgtatccaaagtaaaatatagccgacaccagctttgtgatttcaagcttggtaaagaagtagaatgttg |
48857117 |
T |
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