View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4046_low_8 (Length: 423)
Name: NF4046_low_8
Description: NF4046
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4046_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 105 - 406
Target Start/End: Complemental strand, 46751066 - 46750765
Alignment:
| Q |
105 |
caccctatctcaggaacaagtccttgaaggctttaaaagtctcaaattcagtaacacaaaactggtaaaagaaaacataataatcatcatcaccatcatc |
204 |
Q |
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| T |
46751066 |
caccctatctcaggaacaagtccttgaaggctttaaaagtctcaaattcagtaacgcaaaactggtaaaagaaaacataataatcatcatcaccatcatc |
46750967 |
T |
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| Q |
205 |
atgctactgctcaacccaaactttaatgatgatggtcatgactaaaaatattcttaaaataaaatgcatttctaagtatgcataaatatcaaaatgaaga |
304 |
Q |
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| T |
46750966 |
atgctactgctcaacccaaactttaatgatgatggtcatgactaaaaatattcttaaaataaaatgcatttctaagtatgcataaatatcaaaatgaaga |
46750867 |
T |
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| Q |
305 |
gttaaatatatgcacataaaaaagtgaagaagagttaataaacaattaagtaccgtaaattttcttccagtgatgatagaaagaaaggactctaggaaga |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46750866 |
gttaaatatatgcacataaaaaagtgaagaagagttaataaacaattaagtaccgtaaattttcttccagtgatgatagaaagaaaggactctaggaaga |
46750767 |
T |
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| Q |
405 |
at |
406 |
Q |
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|| |
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| T |
46750766 |
at |
46750765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 46751170 - 46751102
Alignment:
| Q |
1 |
attatgctaaagtacaaaattaacatggaacttcaacataatgcaccaaagagctaggaggaagctcag |
69 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
46751170 |
attatgctaaagtacaaaattaacatggaacttcaacatcatgcaccaaagagctaggaggtagctcag |
46751102 |
T |
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