View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4047_high_12 (Length: 224)

Name: NF4047_high_12
Description: NF4047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4047_high_12
NF4047_high_12
[»] chr3 (19 HSPs)
chr3 (2-224)||(290964-291185)
chr3 (196-224)||(2756607-2756635)
chr3 (196-224)||(3089798-3089826)
chr3 (196-224)||(3090418-3090446)
chr3 (196-224)||(5963105-5963133)
chr3 (196-224)||(11345359-11345387)
chr3 (196-224)||(11581884-11581912)
chr3 (196-224)||(17764962-17764990)
chr3 (196-224)||(18364678-18364706)
chr3 (196-224)||(18365281-18365309)
chr3 (196-224)||(19066282-19066310)
chr3 (196-224)||(23682039-23682067)
chr3 (196-224)||(24054276-24054304)
chr3 (196-224)||(40036396-40036424)
chr3 (196-224)||(40927541-40927569)
chr3 (196-224)||(40974698-40974726)
chr3 (196-224)||(41587311-41587339)
chr3 (196-224)||(49080609-49080637)
chr3 (196-224)||(54605810-54605838)
[»] chr2 (18 HSPs)
chr2 (2-162)||(24526005-24526165)
chr2 (2-162)||(24532676-24532836)
chr2 (193-224)||(6229885-6229916)
chr2 (190-224)||(37198963-37198997)
chr2 (191-224)||(17829091-17829124)
chr2 (196-224)||(3515473-3515501)
chr2 (196-224)||(4437979-4438007)
chr2 (196-224)||(5474669-5474697)
chr2 (196-224)||(10357121-10357149)
chr2 (196-224)||(15006475-15006503)
chr2 (196-224)||(33146080-33146108)
chr2 (196-224)||(33146703-33146731)
chr2 (196-224)||(34173091-34173119)
chr2 (196-224)||(35175667-35175695)
chr2 (196-224)||(37009660-37009688)
chr2 (196-224)||(37199600-37199628)
chr2 (196-224)||(41521668-41521696)
chr2 (196-224)||(44332383-44332411)
[»] chr5 (5 HSPs)
chr5 (193-224)||(8573349-8573380)
chr5 (196-224)||(4877375-4877403)
chr5 (196-224)||(19408585-19408613)
chr5 (196-224)||(35751562-35751590)
chr5 (196-224)||(36742582-36742610)
[»] chr1 (5 HSPs)
chr1 (193-224)||(29510479-29510510)
chr1 (193-224)||(45195239-45195270)
chr1 (196-224)||(794748-794776)
chr1 (196-224)||(9997999-9998027)
chr1 (196-224)||(16536417-16536445)
[»] chr8 (7 HSPs)
chr8 (191-224)||(8438568-8438601)
chr8 (196-224)||(11140142-11140170)
chr8 (196-224)||(13422067-13422095)
chr8 (196-224)||(17564716-17564744)
chr8 (196-224)||(31739557-31739585)
chr8 (196-224)||(31846495-31846523)
chr8 (196-224)||(40791756-40791784)
[»] chr7 (11 HSPs)
chr7 (191-224)||(3391798-3391831)
chr7 (196-224)||(12677145-12677173)
chr7 (196-224)||(14078402-14078430)
chr7 (196-224)||(14388430-14388458)
chr7 (196-224)||(16426010-16426038)
chr7 (196-224)||(20261582-20261610)
chr7 (196-224)||(27144227-27144255)
chr7 (196-224)||(32867903-32867931)
chr7 (196-224)||(34999231-34999259)
chr7 (196-224)||(36847878-36847906)
chr7 (196-224)||(48982539-48982567)
[»] scaffold0361 (1 HSPs)
scaffold0361 (196-224)||(17149-17177)
[»] scaffold0289 (1 HSPs)
scaffold0289 (196-224)||(3454-3482)
[»] scaffold0189 (1 HSPs)
scaffold0189 (196-224)||(11335-11363)
[»] scaffold0068 (1 HSPs)
scaffold0068 (196-224)||(59306-59334)
[»] scaffold0006 (1 HSPs)
scaffold0006 (196-224)||(161303-161331)
[»] scaffold0003 (3 HSPs)
scaffold0003 (196-224)||(14723-14751)
scaffold0003 (196-224)||(28869-28897)
scaffold0003 (196-224)||(421193-421221)
[»] chr6 (9 HSPs)
chr6 (196-224)||(4100560-4100588)
chr6 (196-224)||(4125922-4125950)
chr6 (196-224)||(7448891-7448919)
chr6 (196-224)||(10702316-10702344)
chr6 (196-224)||(12026198-12026226)
chr6 (193-221)||(17307248-17307276)
chr6 (196-224)||(21802605-21802633)
chr6 (196-224)||(22022275-22022303)
chr6 (196-224)||(32113784-32113812)
[»] chr4 (9 HSPs)
chr4 (196-224)||(13482229-13482257)
chr4 (196-224)||(13771764-13771792)
chr4 (196-224)||(16960251-16960279)
chr4 (196-224)||(17722796-17722824)
chr4 (196-224)||(19313391-19313419)
chr4 (196-224)||(35667284-35667312)
chr4 (196-224)||(35667567-35667595)
chr4 (196-224)||(37708821-37708849)
chr4 (196-224)||(55068889-55068917)


Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 290964 - 291185
Alignment:
Q  2 cttcaaaagtaagtgcatcattggataagcaatattctgtctagtttctctcaactttatttaacaatcgctaatcccatcaaattataaaagtaaccat 101  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  290964 cttcaaaagtaagtgcatcattggataagcaatattctatctagtttctctcaactttatttaacgatcactaatcccatcaaattataaaagtaaccat 291063  T
Q  102 aaataatgagcatccatgatataattttcaatttgattgtcgagttccatgatttctgaagnnnnnnnntaccgacggatgaaaatacacacttccctct 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||        |||||||||||||||||||||||||||||||    
T  291064 aaataatgagcatccatgatataattttcaatttgattgtcgagttccatgatttctaaag-aaaaaaataccgacggatgaaaatacacacttccctct 291162  T
Q  202 tatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||    
T  291163 tatgttaaaatatacactcccct 291185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 2756635 - 2756607
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  2756635 ccctcttatgttaaaatatacactcccct 2756607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 3089798 - 3089826
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  3089798 ccctcttatgttaaaatatacactcccct 3089826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 3090446 - 3090418
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  3090446 ccctcttatgttaaaatatacactcccct 3090418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 5963105 - 5963133
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  5963105 ccctcttatgttaaaatatacactcccct 5963133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 11345387 - 11345359
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  11345387 ccctcttatgttaaaatatacactcccct 11345359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 11581884 - 11581912
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  11581884 ccctcttatgttaaaatatacactcccct 11581912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 17764990 - 17764962
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  17764990 ccctcttatgttaaaatatacactcccct 17764962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 18364678 - 18364706
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  18364678 ccctcttatgttaaaatatacactcccct 18364706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 18365309 - 18365281
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  18365309 ccctcttatgttaaaatatacactcccct 18365281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 19066310 - 19066282
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  19066310 ccctcttatgttaaaatatacactcccct 19066282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 23682039 - 23682067
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  23682039 ccctcttatgttaaaatatacactcccct 23682067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 24054276 - 24054304
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  24054276 ccctcttatgttaaaatatacactcccct 24054304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 40036424 - 40036396
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  40036424 ccctcttatgttaaaatatacactcccct 40036396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 40927541 - 40927569
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  40927541 ccctcttatgttaaaatatacactcccct 40927569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 40974726 - 40974698
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  40974726 ccctcttatgttaaaatatacactcccct 40974698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 41587339 - 41587311
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  41587339 ccctcttatgttaaaatatacactcccct 41587311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 49080637 - 49080609
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  49080637 ccctcttatgttaaaatatacactcccct 49080609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 54605810 - 54605838
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  54605810 ccctcttatgttaaaatatacactcccct 54605838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 162
Target Start/End: Original strand, 24526005 - 24526165
Alignment:
Q  2 cttcaaaagtaagtgcatcattggataagcaatattctgtctagtttctctcaactttatttaacaatcgctaatcccatcaaattataaaagtaaccat 101  Q
    ||||||||||||||||| |||||||||| ||| ||  | |||| ||| | ||||||||||| ||  ||| |||||||||||| |||||||||||||||||    
T  24526005 cttcaaaagtaagtgcaacattggataaccaacatgttttctactttttgtcaactttattgaaagatcactaatcccatcacattataaaagtaaccat 24526104  T
Q  102 aaataatgagcatccatgatataattttcaatttgattgtcgagttccatgatttctgaag 162  Q
    ||||||||| ||| |||||||||||||||||||| |||||||||||||||||| |||||||    
T  24526105 aaataatgaacattcatgatataattttcaatttaattgtcgagttccatgatctctgaag 24526165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 2 - 162
Target Start/End: Original strand, 24532676 - 24532836
Alignment:
Q  2 cttcaaaagtaagtgcatcattggataagcaatattctgtctagtttctctcaactttatttaacaatcgctaatcccatcaaattataaaagtaaccat 101  Q
    |||||||| |||||||  |||||||||| ||| ||  | |||| ||| |||||||||| || ||  ||| |||||||||||| |||||||||||||||||    
T  24532676 cttcaaaactaagtgcgacattggataaccaacatgttttctactttttctcaactttcttgaaagatcactaatcccatcacattataaaagtaaccat 24532775  T
Q  102 aaataatgagcatccatgatataattttcaatttgattgtcgagttccatgatttctgaag 162  Q
    ||||||||| |||||||||||||||||||||||||||| |||| ||||| ||| |||||||    
T  24532776 aaataatgaacatccatgatataattttcaatttgattttcgaattccacgatctctgaag 24532836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 224
Target Start/End: Complemental strand, 6229916 - 6229885
Alignment:
Q  193 cttccctcttatgttaaaatatacactcccct 224  Q
    ||||||||||||||||||||||||||||||||    
T  6229916 cttccctcttatgttaaaatatacactcccct 6229885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 37198963 - 37198997
Alignment:
Q  190 acacttccctcttatgttaaaatatacactcccct 224  Q
    ||||| |||||||||||||||||||||||||||||    
T  37198963 acactcccctcttatgttaaaatatacactcccct 37198997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 17829091 - 17829124
Alignment:
Q  191 cacttccctcttatgttaaaatatacactcccct 224  Q
    |||| |||||||||||||||||||||||||||||    
T  17829091 cactcccctcttatgttaaaatatacactcccct 17829124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 3515501 - 3515473
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  3515501 ccctcttatgttaaaatatacactcccct 3515473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 4438007 - 4437979
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  4438007 ccctcttatgttaaaatatacactcccct 4437979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 5474669 - 5474697
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  5474669 ccctcttatgttaaaatatacactcccct 5474697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 10357149 - 10357121
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  10357149 ccctcttatgttaaaatatacactcccct 10357121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 15006475 - 15006503
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  15006475 ccctcttatgttaaaatatacactcccct 15006503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 33146080 - 33146108
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  33146080 ccctcttatgttaaaatatacactcccct 33146108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 33146731 - 33146703
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  33146731 ccctcttatgttaaaatatacactcccct 33146703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 34173091 - 34173119
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  34173091 ccctcttatgttaaaatatacactcccct 34173119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 35175667 - 35175695
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  35175667 ccctcttatgttaaaatatacactcccct 35175695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 37009688 - 37009660
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  37009688 ccctcttatgttaaaatatacactcccct 37009660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 37199628 - 37199600
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  37199628 ccctcttatgttaaaatatacactcccct 37199600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 41521696 - 41521668
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  41521696 ccctcttatgttaaaatatacactcccct 41521668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 44332411 - 44332383
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  44332411 ccctcttatgttaaaatatacactcccct 44332383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 224
Target Start/End: Complemental strand, 8573380 - 8573349
Alignment:
Q  193 cttccctcttatgttaaaatatacactcccct 224  Q
    ||||||||||||||||||||||||||||||||    
T  8573380 cttccctcttatgttaaaatatacactcccct 8573349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 4877403 - 4877375
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  4877403 ccctcttatgttaaaatatacactcccct 4877375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 19408585 - 19408613
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  19408585 ccctcttatgttaaaatatacactcccct 19408613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 35751562 - 35751590
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  35751562 ccctcttatgttaaaatatacactcccct 35751590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 36742610 - 36742582
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  36742610 ccctcttatgttaaaatatacactcccct 36742582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 224
Target Start/End: Complemental strand, 29510510 - 29510479
Alignment:
Q  193 cttccctcttatgttaaaatatacactcccct 224  Q
    ||||||||||||||||||||||||||||||||    
T  29510510 cttccctcttatgttaaaatatacactcccct 29510479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 224
Target Start/End: Complemental strand, 45195270 - 45195239
Alignment:
Q  193 cttccctcttatgttaaaatatacactcccct 224  Q
    ||||||||||||||||||||||||||||||||    
T  45195270 cttccctcttatgttaaaatatacactcccct 45195239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 794776 - 794748
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  794776 ccctcttatgttaaaatatacactcccct 794748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 9998027 - 9997999
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  9998027 ccctcttatgttaaaatatacactcccct 9997999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 16536417 - 16536445
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  16536417 ccctcttatgttaaaatatacactcccct 16536445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 8438601 - 8438568
Alignment:
Q  191 cacttccctcttatgttaaaatatacactcccct 224  Q
    |||||| |||||||||||||||||||||||||||    
T  8438601 cacttctctcttatgttaaaatatacactcccct 8438568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 11140142 - 11140170
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  11140142 ccctcttatgttaaaatatacactcccct 11140170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 13422095 - 13422067
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  13422095 ccctcttatgttaaaatatacactcccct 13422067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 17564716 - 17564744
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  17564716 ccctcttatgttaaaatatacactcccct 17564744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 31739557 - 31739585
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  31739557 ccctcttatgttaaaatatacactcccct 31739585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 31846495 - 31846523
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  31846495 ccctcttatgttaaaatatacactcccct 31846523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 40791784 - 40791756
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  40791784 ccctcttatgttaaaatatacactcccct 40791756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Original strand, 3391798 - 3391831
Alignment:
Q  191 cacttccctcttatgttaaaatatacactcccct 224  Q
    |||| |||||||||||||||||||||||||||||    
T  3391798 cactcccctcttatgttaaaatatacactcccct 3391831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 12677145 - 12677173
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  12677145 ccctcttatgttaaaatatacactcccct 12677173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 14078402 - 14078430
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  14078402 ccctcttatgttaaaatatacactcccct 14078430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 14388430 - 14388458
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  14388430 ccctcttatgttaaaatatacactcccct 14388458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 16426038 - 16426010
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  16426038 ccctcttatgttaaaatatacactcccct 16426010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 20261610 - 20261582
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  20261610 ccctcttatgttaaaatatacactcccct 20261582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 27144227 - 27144255
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  27144227 ccctcttatgttaaaatatacactcccct 27144255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 32867931 - 32867903
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  32867931 ccctcttatgttaaaatatacactcccct 32867903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 34999231 - 34999259
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  34999231 ccctcttatgttaaaatatacactcccct 34999259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 36847878 - 36847906
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  36847878 ccctcttatgttaaaatatacactcccct 36847906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 48982567 - 48982539
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  48982567 ccctcttatgttaaaatatacactcccct 48982539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 17177 - 17149
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  17177 ccctcttatgttaaaatatacactcccct 17149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 3454 - 3482
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  3454 ccctcttatgttaaaatatacactcccct 3482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 11335 - 11363
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  11335 ccctcttatgttaaaatatacactcccct 11363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 59306 - 59334
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  59306 ccctcttatgttaaaatatacactcccct 59334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 161303 - 161331
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  161303 ccctcttatgttaaaatatacactcccct 161331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 14751 - 14723
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  14751 ccctcttatgttaaaatatacactcccct 14723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 28897 - 28869
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  28897 ccctcttatgttaaaatatacactcccct 28869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 421193 - 421221
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  421193 ccctcttatgttaaaatatacactcccct 421221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 4100560 - 4100588
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  4100560 ccctcttatgttaaaatatacactcccct 4100588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 4125922 - 4125950
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  4125922 ccctcttatgttaaaatatacactcccct 4125950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 7448919 - 7448891
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  7448919 ccctcttatgttaaaatatacactcccct 7448891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 10702316 - 10702344
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  10702316 ccctcttatgttaaaatatacactcccct 10702344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 12026226 - 12026198
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  12026226 ccctcttatgttaaaatatacactcccct 12026198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 221
Target Start/End: Original strand, 17307248 - 17307276
Alignment:
Q  193 cttccctcttatgttaaaatatacactcc 221  Q
    |||||||||||||||||||||||||||||    
T  17307248 cttccctcttatgttaaaatatacactcc 17307276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 21802633 - 21802605
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  21802633 ccctcttatgttaaaatatacactcccct 21802605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 22022303 - 22022275
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  22022303 ccctcttatgttaaaatatacactcccct 22022275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 32113784 - 32113812
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  32113784 ccctcttatgttaaaatatacactcccct 32113812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 13482229 - 13482257
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  13482229 ccctcttatgttaaaatatacactcccct 13482257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 13771764 - 13771792
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  13771764 ccctcttatgttaaaatatacactcccct 13771792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 16960251 - 16960279
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  16960251 ccctcttatgttaaaatatacactcccct 16960279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 17722796 - 17722824
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  17722796 ccctcttatgttaaaatatacactcccct 17722824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 19313391 - 19313419
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  19313391 ccctcttatgttaaaatatacactcccct 19313419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 35667312 - 35667284
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  35667312 ccctcttatgttaaaatatacactcccct 35667284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Complemental strand, 35667595 - 35667567
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  35667595 ccctcttatgttaaaatatacactcccct 35667567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 37708821 - 37708849
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  37708821 ccctcttatgttaaaatatacactcccct 37708849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 224
Target Start/End: Original strand, 55068889 - 55068917
Alignment:
Q  196 ccctcttatgttaaaatatacactcccct 224  Q
    |||||||||||||||||||||||||||||    
T  55068889 ccctcttatgttaaaatatacactcccct 55068917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University