View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4047_high_2 (Length: 379)

Name: NF4047_high_2
Description: NF4047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4047_high_2
NF4047_high_2
[»] chr3 (4 HSPs)
chr3 (33-361)||(290466-290794)
chr3 (167-256)||(280207-280296)
chr3 (290-361)||(280021-280092)
chr3 (62-114)||(8354176-8354228)
[»] chr2 (9 HSPs)
chr2 (33-361)||(24525518-24525846)
chr2 (53-361)||(24532190-24532497)
chr2 (60-114)||(42436450-42436504)
chr2 (62-114)||(1979988-1980040)
chr2 (62-114)||(4789262-4789314)
chr2 (64-112)||(16107393-16107441)
chr2 (67-114)||(106466-106512)
chr2 (84-114)||(16549969-16549999)
chr2 (53-114)||(3829243-3829304)
[»] chr7 (3 HSPs)
chr7 (47-149)||(6015774-6015876)
chr7 (67-149)||(13316515-13316596)
chr7 (69-114)||(17257432-17257476)
[»] chr1 (5 HSPs)
chr1 (47-149)||(12252506-12252608)
chr1 (54-114)||(18172642-18172701)
chr1 (62-149)||(18547889-18547976)
chr1 (64-112)||(2981105-2981153)
chr1 (61-115)||(29101796-29101850)
[»] chr4 (3 HSPs)
chr4 (40-114)||(4442126-4442200)
chr4 (68-134)||(10266447-10266511)
chr4 (68-134)||(10285472-10285536)
[»] chr8 (2 HSPs)
chr8 (41-149)||(11405858-11405965)
chr8 (62-114)||(26588155-26588207)
[»] chr6 (3 HSPs)
chr6 (62-114)||(7732693-7732745)
chr6 (64-112)||(24585721-24585769)
chr6 (62-112)||(5090494-5090544)
[»] chr5 (2 HSPs)
chr5 (62-114)||(14460178-14460230)
chr5 (67-114)||(29286097-29286143)


Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 33 - 361
Target Start/End: Complemental strand, 290794 - 290466
Alignment:
Q  33 tctaattatttttcttaaagataacggtgtcatcattttattggttataaatttatatatttttgtataaatatttatgatatgcaaccttgatcccact 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  290794 tctaattatttttcttaaagataacggtgtcatcattttattggttataaatttatatatttttgtataaatattcatgatatgcaaccttgatcccact 290695  T
Q  133 taacggaatttctggattcattgctgactatgttgacagacacattgaaagggccttcacctagacccagttcttcaaacaagaccaacgtgtttacatc 232  Q
    ||||| ||||| ||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  290694 taacgaaatttttggattcgttgctaactatgtcgacagacacattgaaagggccttcacctagacccagctcttcaaacaagaccaacgtgtttacatc 290595  T
Q  233 tttatttaagaatggccttggcactgcgtaaaatctaaaagatgaattttcaccaatccaataccttccgatactttgaccgttaacccatgcttttcct 332  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  290594 tttatttaagaatggccttggcactgcgtaaaacctaaaagatgaattttcaccaatccaataccttccgatactttgaccgttaacccatgcttttcct 290495  T
Q  333 ctttgaagacctatcaaatccaggactac 361  Q
    |||||||||||||||||||||||||||||    
T  290494 ctttgaagacctatcaaatccaggactac 290466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 167 - 256
Target Start/End: Complemental strand, 280296 - 280207
Alignment:
Q  167 gacagacacattgaaagggccttcacctagacccagttcttcaaacaagaccaacgtgtttacatctttatttaagaatggccttggcac 256  Q
    ||||||| |||||||||||  | || | | ||||| ||| |||||||| ||||||||||||||||| ||||||||||||| |||||||||    
T  280296 gacagacgcattgaaaggggttgcatcaaaacccatttcctcaaacaaaaccaacgtgtttacatcattatttaagaatgaccttggcac 280207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 290 - 361
Target Start/End: Complemental strand, 280092 - 280021
Alignment:
Q  290 ccaataccttccgatactttgaccgttaacccatgcttttcctctttgaagacctatcaaatccaggactac 361  Q
    |||||||||||| ||||||||||| ||||||||||||| |||| | ||||| |||||||| |||| ||||||    
T  280092 ccaataccttccaatactttgaccattaacccatgcttctcctttctgaaggcctatcaagtccaagactac 280021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 8354228 - 8354176
Alignment:
Q  62 tcatcattttattggttataaatttatatatttttgtataaatatttatgata 114  Q
    ||||||||||| |||||||   ||||||||||||||| |||||||||||||||    
T  8354228 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgata 8354176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 33 - 361
Target Start/End: Complemental strand, 24525846 - 24525518
Alignment:
Q  33 tctaattatttttcttaaagataacggtgtcatcattttattggttataaatttatatat-ttttgtataaatatttatgatatgcaaccttgatcccac 131  Q
    |||||||||||| | || | |||| ||||||||||||| ||||||||| ||||||| ||| |||| |||||||||| |||||  ||||||||||||||||    
T  24525846 tctaattattttgcatagacataatggtgtcatcattt-attggttatgaatttatgtatattttttataaatattcatgatgagcaaccttgatcccac 24525748  T
Q  132 ttaacggaatttctggattcattgctgactatgttgacagacacattgaaagggccttcacctagacccagttcttcaaacaagaccaacgtgtttacat 231  Q
    |||||  |||||||||||||  |||||| ||||| ||||||||||||||||||||||||||| ||||||| ||| |||||||||||||| ||||||||||    
T  24525747 ttaacaaaatttctggattcgatgctgattatgtcgacagacacattgaaagggccttcacccagacccaattcctcaaacaagaccaatgtgtttacat 24525648  T
Q  232 ctttatttaagaatggccttggcactgcgtaaaatctaaaagatgaattttcaccaatccaataccttccgatactttgaccgttaacccatgcttttcc 331  Q
    ||||||| |||||||||||||||||||||||| | |||||||||||||||||||||| |  ||||||||| ||||||||||| |||||||||||||||||    
T  24525647 ctttattaaagaatggccttggcactgcgtaatacctaaaagatgaattttcaccaagctgataccttccaatactttgaccattaacccatgcttttcc 24525548  T
Q  332 tctttgaagacctatcaaatccaggactac 361  Q
    ||||||||| ||||||||||||||||||||    
T  24525547 tctttgaaggcctatcaaatccaggactac 24525518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 53 - 361
Target Start/End: Complemental strand, 24532497 - 24532190
Alignment:
Q  53 ataacggtgtcatcattttattggttataaatttatatatttttgtataaatatttatgatatgcaaccttgatcccacttaacggaatttctggattca 152  Q
    |||| ||||||||||||| ||||||||| ||||||| ||||| |||||||||||| |||||  |||||||||||||||||||||  |||||||||||||     
T  24532497 ataatggtgtcatcattt-attggttatgaatttatgtatttctgtataaatattcatgatgagcaaccttgatcccacttaacaaaatttctggattcg 24532399  T
Q  153 ttgctgactatgttgacagacacattgaaagggccttcacctagacccagttcttcaaacaagaccaacgtgtttacatctttatttaagaatggccttg 252  Q
     |||||| ||||| ||||||||||||||||||||||| ||| ||||||| ||| |||||||||||||| ||||||||||||||||| |||||||||||||    
T  24532398 atgctgattatgtcgacagacacattgaaagggcctttacccagacccaattcctcaaacaagaccaatgtgtttacatctttattaaagaatggccttg 24532299  T
Q  253 gcactgcgtaaaatctaaaagatgaattttcaccaatccaataccttccgatactttgaccgttaacccatgcttttcctctttgaagacctatcaaatc 352  Q
    ||||||||||| | |||||||||||||||||||||| || ||||||||| |||| |||||| |||||||||||||||||||||||||| |||||||||||    
T  24532298 gcactgcgtaatacctaaaagatgaattttcaccaagccgataccttccaatacattgaccattaacccatgcttttcctctttgaaggcctatcaaatc 24532199  T
Q  353 caggactac 361  Q
    |||||||||    
T  24532198 caggactac 24532190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 42436450 - 42436504
Alignment:
Q  60 tgtcatcattttattggttataaatttatatatttttgtataaatatttatgata 114  Q
    ||||||||||||||| |||||||||||| |||||||| || ||||||||||||||    
T  42436450 tgtcatcattttatttgttataaatttacatatttttctagaaatatttatgata 42436504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 1979988 - 1980040
Alignment:
Q  62 tcatcattttattggttataaatttatatatttttgtataaatatttatgata 114  Q
    ||||||||||| ||||||| | ||||||||||||||| |||||||||||||||    
T  1979988 tcatcattttaatggttatgattttatatatttttgtttaaatatttatgata 1980040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 4789314 - 4789262
Alignment:
Q  62 tcatcattttattggttataaatttatatatttttgtataaatatttatgata 114  Q
    ||||||||||| |||||||   ||||||||||||||| |||||||||||||||    
T  4789314 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgata 4789262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 16107441 - 16107393
Alignment:
Q  64 atcattttattggttataaatttatatatttttgtataaatatttatga 112  Q
    ||||||||| |||||||   |||||||||||||||||||||||||||||    
T  16107441 atcattttaatggttatggttttatatatttttgtataaatatttatga 16107393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 106466 - 106512
Alignment:
Q  67 attttattggttataaatttatatatttttgtataaatatttatgata 114  Q
    |||||||| |||||||||||||||| ||||||||||||||||| ||||    
T  106466 attttattagttataaatttatata-ttttgtataaatatttaagata 106512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 114
Target Start/End: Complemental strand, 16549999 - 16549969
Alignment:
Q  84 tttatatatttttgtataaatatttatgata 114  Q
    |||||||||||||||||||||||||||||||    
T  16549999 tttatatatttttgtataaatatttatgata 16549969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 3829304 - 3829243
Alignment:
Q  53 ataacggtgtcatcattttattggttataaatttatatatttttgtataaatatttatgata 114  Q
    |||| |||||||| |||||||| ||||| |||||| || |||||||| || |||||||||||    
T  3829304 ataatggtgtcataattttatttgttatgaatttaaatgtttttgtaaaactatttatgata 3829243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 47 - 149
Target Start/End: Original strand, 6015774 - 6015876
Alignment:
Q  47 ttaaagataacggtgtcatcattttattggttataaatttatatatttttgtataaatatttatgatatgcaaccttgatcccacttaacggaatttctg 146  Q
    |||| ||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||  |||| ||||||||  | ||||||||    
T  6015774 ttaatgataatgatgtcatcgttttattggttataaatttatatatttttgtataaatatttatgataaacaattttgaccccacttattgaaatttctg 6015873  T
Q  147 gat 149  Q
    |||    
T  6015874 gat 6015876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 149
Target Start/End: Original strand, 13316515 - 13316596
Alignment:
Q  67 attttattggttataaatttatatatttttgtataaatatttatgatatgcaaccttgatcccacttaacggaatttctggat 149  Q
    |||||||| ||||||||||| |||| ||||||||||||||||| ||||  |||  |||| ||||||||  | |||||||||||    
T  13316515 attttattagttataaatttgtata-ttttgtataaatatttaagataaacaatattgaccccacttattgaaatttctggat 13316596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 17257476 - 17257432
Alignment:
Q  69 tttattggttataaatttatatatttttgtataaatatttatgata 114  Q
    |||||| ||||||||||||||||||||| |||||| ||||||||||    
T  17257476 tttattagttataaatttatatattttt-tataaacatttatgata 17257432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 47 - 149
Target Start/End: Original strand, 12252506 - 12252608
Alignment:
Q  47 ttaaagataacggtgtcatcattttattggttataaatttatatatttttgtataaatatttatgatatgcaaccttgatcccacttaacggaatttctg 146  Q
    |||| ||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||  |||| ||||||||  | ||||||||    
T  12252506 ttaatgataatgatgtcatcgttttattggttataaatttatatatttttgtataaatatttatgataaacaattttgaccccacttattgaaatttctg 12252605  T
Q  147 gat 149  Q
    |||    
T  12252606 gat 12252608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 18172642 - 18172701
Alignment:
Q  54 taacggtgtcatcattttattggttataaatttatatatttttgtataaatatttatgata 114  Q
    ||||| |||| || |||||||||||||||||||||||| |||||||||||||||| |||||    
T  18172642 taacgatgtcttctttttattggttataaatttatata-ttttgtataaatatttttgata 18172701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 149
Target Start/End: Complemental strand, 18547976 - 18547889
Alignment:
Q  62 tcatcattttattggttataaatttatatatttttgtataaatatttatgatatgcaaccttgatcccacttaacggaatttctggat 149  Q
    ||||||||||| |||||||   ||||||||||||||| |||||||||||||||  | | ||||| ||||||| | | |||||||||||    
T  18547976 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgataaacgatcttgaccccactttatgaaatttctggat 18547889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 2981105 - 2981153
Alignment:
Q  64 atcattttattggttataaatttatatatttttgtataaatatttatga 112  Q
    ||||||||| |||||||   |||||||||||||||||||||||||||||    
T  2981105 atcattttaatggttatggttttatatatttttgtataaatatttatga 2981153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 29101850 - 29101796
Alignment:
Q  61 gtcatcattttattggttataaatttatatatttttgtataaatatttatgatat 115  Q
    ||||||||||||| | |||||||||||||||| ||| ||| ||||||||| ||||    
T  29101850 gtcatcattttatcgtttataaatttatatatatttttattaatatttataatat 29101796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 4442200 - 4442126
Alignment:
Q  40 atttttcttaaagataacggtgtcatcattttattggttataaatttatatatttttgtataaatatttatgata 114  Q
    ||||||||||| ||||| | || ||| ||||| ||||||||| |||||||| ||||||| |||||||||||||||    
T  4442200 atttttcttaatgataatgatgccattatttttttggttatagatttatatttttttgtttaaatatttatgata 4442126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 10266511 - 10266447
Alignment:
Q  68 ttttattggttataaatttatatatttttgtataaatatttatgatatgcaaccttgatcccactta 134  Q
    |||||||||||||||||||| || |||||  ||||||||||||||||  | | ||||||||||||||    
T  10266511 ttttattggttataaatttaaatgttttt--ataaatatttatgataaacgatcttgatcccactta 10266447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 10285536 - 10285472
Alignment:
Q  68 ttttattggttataaatttatatatttttgtataaatatttatgatatgcaaccttgatcccactta 134  Q
    ||||||||||||| |||||| ||||||||  ||||||||||||||||  | | ||||||||||||||    
T  10285536 ttttattggttatgaatttaaatattttt--ataaatatttatgataaacgatcttgatcccactta 10285472  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 11405858 - 11405965
Alignment:
Q  41 tttttcttaaagataacggtgtcatcattttattggttataaatttatatatttttgtataaatatttatgatatgcaaccttgatcccacttaacggaa 140  Q
    ||||| |||| ||||| | ||||||||||||||| |||||||||||| |||||||| || ||||||||| ||||   ||| |||| ||||||||  | ||    
T  11405858 tttttgttaatgataatgatgtcatcattttatttgttataaatttacatattttt-tagaaatatttaagataaataactttgaccccacttattgaaa 11405956  T
Q  141 tttctggat 149  Q
    |||||||||    
T  11405957 tttctggat 11405965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 26588207 - 26588155
Alignment:
Q  62 tcatcattttattggttataaatttatatatttttgtataaatatttatgata 114  Q
    ||||||||||| ||||||| | ||||||||||||||| |||||||||||||||    
T  26588207 tcatcattttaatggttatgattttatatatttttgtttaaatatttatgata 26588155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 7732745 - 7732693
Alignment:
Q  62 tcatcattttattggttataaatttatatatttttgtataaatatttatgata 114  Q
    ||||||||||| ||||||| | ||||||||||||||| |||||||||||||||    
T  7732745 tcatcattttaatggttatgattttatatatttttgtttaaatatttatgata 7732693  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 24585769 - 24585721
Alignment:
Q  64 atcattttattggttataaatttatatatttttgtataaatatttatga 112  Q
    ||||||||| |||||||   |||||||||||||||||||||||||||||    
T  24585769 atcattttaatggttatggttttatatatttttgtataaatatttatga 24585721  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 5090544 - 5090494
Alignment:
Q  62 tcatcattttattggttataaatttatatatttttgtataaatatttatga 112  Q
    ||||||||||||| ||||| |||| ||| ||||||||| ||||||||||||    
T  5090544 tcatcattttatttgttatgaattcatagatttttgtaaaaatatttatga 5090494  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 14460230 - 14460178
Alignment:
Q  62 tcatcattttattggttataaatttatatatttttgtataaatatttatgata 114  Q
    ||||||||||| |||||||   ||||||||||||||| |||||||||||||||    
T  14460230 tcatcattttaatggttatggttttatatatttttgtttaaatatttatgata 14460178  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 29286143 - 29286097
Alignment:
Q  67 attttattggttataaatttatatatttttgtataaatatttatgata 114  Q
    |||||||| |||||||||||||||| ||||||||||||||||| ||||    
T  29286143 attttattagttataaatttatata-ttttgtataaatatttaagata 29286097  T

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