View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4047_low_1 (Length: 684)
Name: NF4047_low_1
Description: NF4047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4047_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 609; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 19 - 671
Target Start/End: Original strand, 47981622 - 47982274
Alignment:
| Q |
19 |
gttggatcctcaattagcagctgagaaagcagtgagtgagattggccaaggatacaatttatgcaatgatataagattttcggcttgcaggtcaaggttg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
47981622 |
gttggatcctcaattagcagctgagaaagcagtgagtgagattggtcaaggatacaatttatgcaatgatataagattttcggcttgcaagccaaggttg |
47981721 |
T |
|
| Q |
119 |
atccatattgacaatagtagttcaaacacaagggaccttgtttttccttctggtgttgttgtccctaatgttcccttatctattaagtctgataaaggtg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47981722 |
atccatattgacaatagtagttcaaacacaagggaccttgtttttccttctggtgttgttgtccctaatgttcccttatctattaagtctgataaaggtg |
47981821 |
T |
|
| Q |
219 |
actgtaccaggtttcgatccaatgtcctcacttttaatcaggtcattgcaatcacaaccttacttctgcttcaatttcttatgattatctgtgtaacatt |
318 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47981822 |
actgtaccaggtttcgatccgatgtcctcacttttaatcaggtcattgcaatcacaaccttacttctgcttcaatttcttatgattatctgtgtaacatt |
47981921 |
T |
|
| Q |
319 |
gccagttcagattgaagacttttccaacgaccaattatattcaatagtttcatttttattaattattaccggtgtctggtgtctctgtcaatgtttcata |
418 |
Q |
| |
|
|||| |||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
47981922 |
gccacttcagattgaagacgtgtccaatgaccaattatattcaatagtttcatttttattaattattaccggtgtctggtgtctctgtcagtgtttcata |
47982021 |
T |
|
| Q |
419 |
gatgattatatatgcttgttctcctttttcaactagttgattgaatccatgttcagcacaaatgtgtaacacaaaagttattgactagtggcagatggag |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47982022 |
gatgattatatatgcttgttctcctttttcaactagttgattgaatccatgttcagcacaaatgtgtaacacaaaagttattgactagtggcagatggag |
47982121 |
T |
|
| Q |
519 |
tagttgatatattgagcaagttggattagcctaactgtgttttatcaattgtattatttatatgattttctagttgcggataatattttacaagattgtt |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47982122 |
tagttgatatattgagcaagttggattagcctaactgtgttttatcaattgtattatttatatgattttctagttgcggaaaatattttacaagattgtt |
47982221 |
T |
|
| Q |
619 |
ttttgattttgacagttgattcattagatacgattcatcgtggtattatgatg |
671 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
47982222 |
ttttgattttgacagttgattcattagatactattcatcgtggtattatgatg |
47982274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 306
Target Start/End: Complemental strand, 35118155 - 35117867
Alignment:
| Q |
19 |
gttggatcctcaattagcagctgagaaagcagtgagtgagattggccaaggatacaatttatgcaatgatataagattttcggcttgcaggtcaaggttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||| || ||||||| |||||||||| |
|
|
| T |
35118155 |
gttggatcctcaattagcagctgagaaagctgtgagtgtgattggtcaaggatacaatttatgcaatgatataagattctctgcttgcaagtcaaggttg |
35118056 |
T |
|
| Q |
119 |
atccatattgacaatagtagttcaaacacaagggaccttgtttttccttctggtgttgttgtccctaatgttcccttatctattaagtctgataaaggtg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35118055 |
atccatattgacaatagtagttcaaacacaagggaccttgtttttccttctggtgttgttgtccctaatgttcccttatctattaagtctgataaaggtg |
35117956 |
T |
|
| Q |
219 |
actgtaccaggtttcgatccaatgtcctcacttttaatcaggtcattgcaatcacaaccttacttctgcttca-atttcttatgattat |
306 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35117955 |
attgtaccaggtttcgatccgatgtcctcacttttattcaggtcattgcaatcacaaccttacttctgcttcatttttcttatgattat |
35117867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University