View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4047_low_11 (Length: 237)
Name: NF4047_low_11
Description: NF4047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4047_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 10970859 - 10971080
Alignment:
| Q |
1 |
cccaacaattgtgcaaattgttaacacacctgaaaacgtgcctaatggatttggtgcaacttatgtaatggatgatgaaatcactgaagggcctgaaatg |
100 |
Q |
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| T |
10970859 |
cccaacaattgtgcaaattgttaacacacctgaaaacgtgcctaatggatttggtgcaacttatgtaatggatgatgaaatcactgaagggcctgaaatg |
10970958 |
T |
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| Q |
101 |
agttcaaagcacattggaagagcacaagggttgtttggtcaagcttctctgcatgatattggaatgtttatgttgacaaattttattttcacagagggaa |
200 |
Q |
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| T |
10970959 |
agttcaaagcacattggaagagcacaagggttgtttggtcaagcttctctgcatgatattggaatgtttatgttgacaaattttattttcacagagggaa |
10971058 |
T |
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| Q |
201 |
actatgcagggagcacacttag |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
10971059 |
actatgcagggagcacacttag |
10971080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 30509748 - 30509527
Alignment:
| Q |
1 |
cccaacaattgtgcaaattgttaacacacctgaaaacgtgcctaatggatttggtgcaacttatgtaatggatgatgaaatcactgaagggcctgaaatg |
100 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30509748 |
cccaacaattctgcaaattgttaacacacccgaaaacgtgcctaatggatttggtgcaacttatgtaatggatgatgaaatcactgaagggccagaaatg |
30509649 |
T |
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| Q |
101 |
agttcaaagcacattggaagagcacaagggttgtttggtcaagcttctctgcatgatattggaatgtttatgttgacaaattttattttcacagagggaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30509648 |
agttcaaagcacattggaagagcacaagggttgtttggtcaagcttctctgcatgatattggaatgtttatgttgacaaattttattttcacagatggaa |
30509549 |
T |
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| Q |
201 |
actatgcagggagcacacttag |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
30509548 |
actatgcagggagcacacttag |
30509527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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