View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4047_low_3 (Length: 344)
Name: NF4047_low_3
Description: NF4047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4047_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 30723205 - 30723514
Alignment:
| Q |
18 |
gaagcataaggcaaacgaggatataatcagcaatctacctgattcacttataactcacattctgtcttgtgtccctacgaaagacgctgctcgtacaagt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30723205 |
gaagcataaggcaaacgaggatataatcagcaatctacctgattcacttataacttacattctgtcttgtgtccctacgaaagacgctgctcgtacaagt |
30723304 |
T |
|
| Q |
118 |
gtgttatctaaacgatggatagattgttggactttcgtcaccaaggtgaacttagatgattgtgtgttctttaaacacaagaagaagaaatcaggtggaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
30723305 |
gtgttatctaaacgatggatagattgttggactttcgtcaccaaggtgaacttagatgatagtatgttctttaaacacaagaagaagaaatcaggtggaa |
30723404 |
T |
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| Q |
218 |
aacggtactttataaactttgtcaatagagtacttcatcttactaaaagtaacactgctgaaagtttttctcttgttatcactaacaagtatgatatttc |
317 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30723405 |
aacggtactttataaactttgtcaatagagcacttcatcttactaaaagtaacactgctgaaagtttttctcttgttatcactaacaagtatgatatttc |
30723504 |
T |
|
| Q |
318 |
ccttctaaat |
327 |
Q |
| |
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|||||||||| |
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| T |
30723505 |
ccttctaaat |
30723514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 312
Target Start/End: Original strand, 30715529 - 30715807
Alignment:
| Q |
37 |
gatataatcagcaatctacctgattcacttataactcacattctgtcttgtgtccctacgaaagacgctgctcgtacaagtgtgttatctaaacgatgga |
136 |
Q |
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|||||||||||||| ||||| ||||||||| | ||| |||||| || | | |||| || ||||| ||||||||||| ||||||||||| | | | |||| |
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| T |
30715529 |
gatataatcagcaagctaccctattcacttagatctcgcattctctcatttctcccgacaaaagatgctgctcgtacgagtgtgttatcaagaagttgga |
30715628 |
T |
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| Q |
137 |
tagattgttggactttcgtcaccaaggtgaacttagatgattgtgtgttc--tttaaacacaag-aagaagaaatcaggtggaaaacggtactttataaa |
233 |
Q |
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| T |
30715629 |
cagaaagctggacatcaatcaccaagttggacttagatgatagtgtgttccattctcccaaaagtaagaaaaaatcaggtggaaaacaacactttataaa |
30715728 |
T |
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| Q |
234 |
ctttgtcaatagagtacttcatcttactaaaagtaacactgctgaaagtttttctcttgttatcactaacaagtatgat |
312 |
Q |
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|||||||||||||| ||||| |||| | | | | | | || ||| ||||||||||||| |||||||| ||||||||| |
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| T |
30715729 |
ctttgtcaatagagcacttctgcttaatgagaattatagtgtggaatgtttttctcttgtgatcactaataagtatgat |
30715807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 128
Target Start/End: Complemental strand, 11360372 - 11360278
Alignment:
| Q |
34 |
gaggatataatcagcaatctacctgattcacttataactcacattctgtcttgtgtccctacgaaagacgctgctcgtacaagtgtgttatctaa |
128 |
Q |
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|||||| ||||||| |||||||||||||||||||||||||||||| | |||||| | ||||| ||||| || | |||||||||||| |||||||| |
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| T |
11360372 |
gaggatttaatcagtaatctacctgattcacttataactcacattatatcttgtcttcctacaaaagatgcagttcgtacaagtgtcttatctaa |
11360278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 311
Target Start/End: Original strand, 13543478 - 13543554
Alignment:
| Q |
235 |
tttgtcaatagagtacttcatcttactaaaagtaacactgctgaaagtttttctcttgttatcactaacaagtatga |
311 |
Q |
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||||||||||||| |||| ||||||||||||| | | || ||||||||||||||||| |||||||| |||||||| |
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| T |
13543478 |
tttgtcaatagagcccttcttcttactaaaagtgaaaatgtggaaagtttttctcttgtgatcactaataagtatga |
13543554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 235 - 311
Target Start/End: Original strand, 9678534 - 9678610
Alignment:
| Q |
235 |
tttgtcaatagagtacttcatcttactaaaagtaacactgctgaaagtttttctcttgttatcactaacaagtatga |
311 |
Q |
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||||||||||||| |||| ||||||||||||| | | || ||||||||||||||||| |||||||| |||||||| |
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| T |
9678534 |
tttgtcaatagagcccttcttcttactaaaagtgaaaatgtggaaagtttttctcttgtgatcactaataagtatga |
9678610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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