View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4047_low_5 (Length: 328)
Name: NF4047_low_5
Description: NF4047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4047_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 10970871 - 10970683
Alignment:
| Q |
1 |
cacaattgttgggttgtttttgtttttaatgtcatggtagtagaagtgaagatgagtcaatttttctgaaggtaaatatatgttggattgttttgagaac |
100 |
Q |
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| T |
10970871 |
cacaattgttgggttgtttttgtttttaatgtcatggtagtagaagtgaagatgagtcaatttttctgaaggtaaatatatgttggattgttttgagaac |
10970772 |
T |
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| Q |
101 |
actccatttgttgaagttgattgagtaaaaattatatttagagagaagagaaataataaactacgtgaaataagagccattttgatgaa |
189 |
Q |
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| T |
10970771 |
actccatttgttgaagttgattgagtaaaaattatatttagagagaagagaaataataaactacgtgaaataagagccattttgatgaa |
10970683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 186 - 314
Target Start/End: Complemental strand, 10970639 - 10970508
Alignment:
| Q |
186 |
tgaacaacgaaagagacatca---ctctttaatagtttttcctggaatggaatgaattattacccacgttcatcgcgaggaatataaaaaatgttattta |
282 |
Q |
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| T |
10970639 |
tgaacaacgaaagagacatcatcactctttaatagtttttcctggaatggaatgaattattacccacgttcatcgcgaggaatataaaaaatgttattta |
10970540 |
T |
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| Q |
283 |
aagtactatttcatctttttgtccctacctcc |
314 |
Q |
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| T |
10970539 |
aagtactatttcatctttttgtccctacctcc |
10970508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 4 - 189
Target Start/End: Original strand, 30509739 - 30509924
Alignment:
| Q |
4 |
aattgttgggttgtttttgtttttaatgtcatggtagtagaagtgaagatgagtcaatttttctgaaggtaaatatatgttggattgttttgagaacact |
103 |
Q |
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| T |
30509739 |
aattgttgggttgtttttgtttttaatgtcatggtagtagaagtgaagatgagtcaatttttctgagggtaaatatatgttggattgttttgagaacact |
30509838 |
T |
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| Q |
104 |
ccatttgttgaagttgattgagtaaaaattatatttagagagaagagaaataataaactacgtgaaataagagccattttgatgaa |
189 |
Q |
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| T |
30509839 |
ccatttgttgaagttgattgagtaaaaattatatttagagagaagagaaataatgaactacgtgaaataagagccattttgatgaa |
30509924 |
T |
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