View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4047_low_7 (Length: 304)
Name: NF4047_low_7
Description: NF4047
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4047_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 14 - 286
Target Start/End: Original strand, 14773751 - 14774022
Alignment:
| Q |
14 |
atgaacaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctctgtgactccacattcagaaatctctctcaacacaagatatttt |
113 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14773751 |
atgaacaaaaactgca-tgtcacatgaggccaaagactccttgttggccagcagctctgtgactccacattcagaaatctctctcaacacaagatatttt |
14773849 |
T |
|
| Q |
114 |
ttgttttcctacaaataaaacgataaatcatgaattggaagaaataaatgccaacacacaaaatgaatacatggaattaagactttggtgtgagaaaagg |
213 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14773850 |
ttgttttcctacaaataaaacgatgaatcatgaattggaagaaataaatgccaaaacacaaaatgaatacatggaattaagactttggtgtgagaaaagg |
14773949 |
T |
|
| Q |
214 |
tgaaagaaatgaaatgtctttcactgtcacaataaaaattatcaattaccctagaaatatcaacaacatttac |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14773950 |
tgaaagaaatgaaatgtctttcactgtcacaataaaaattatcaattaccctagaaatatcaacaacatttac |
14774022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 17881020 - 17881248
Alignment:
| Q |
17 |
aacaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctctgtgactccacattcagaaatctctctcaacacaagatattttttg |
116 |
Q |
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||||||||| ||||||||||||||||||||||||||||| |||| ||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| |
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| T |
17881020 |
aacaaaaaccgcaatgtcacatgaggccaaagactccttattggctagcagctttgtgactccaccttcagaaatctctctcagcacaagatattttttg |
17881119 |
T |
|
| Q |
117 |
ttttcctacaaataaaacgataaatcatgaattggaagaaataaatgcca-acacacaaaatgaatacatggaattaagactttggtgtgagaaaaggtg |
215 |
Q |
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|||||||||||| |||| ||| || | |||||||||||| ||| | | | | | ||||||||||||||| ||| |||||||||||| ||||||| | |
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| T |
17881120 |
ttttcctacaaacaaaatgattaaccgtgaattggaagatgtaattccaatatatacaaaatgaatacatcaaatgaagactttggtgcaggaaaaggcg |
17881219 |
T |
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| Q |
216 |
aaagaaatgaaatgtctttcactgtcaca |
244 |
Q |
| |
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|||||||||||||||||||| |||||||| |
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| T |
17881220 |
aaagaaatgaaatgtctttctctgtcaca |
17881248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 226
Target Start/End: Original strand, 15015513 - 15015727
Alignment:
| Q |
14 |
atgaacaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctctgtgactccacattcagaaatctctctcaacacaagatatttt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||| | || ||||||| ||| ||||||| ||||||||||||||||| ||||| ||||||| |
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| T |
15015513 |
atgaacaaaaactgcaatgtcacatgagcccagagactccttgtttgctagcagctttgtaactccaccttcagaaatctctctcagcacaatatatttt |
15015612 |
T |
|
| Q |
114 |
ttgttttcctacaaataaaacgataaatcatgaattggaagaaataaatgccaaca--cacaaaatgaatacatggaattaagactttggtgtgagaaaa |
211 |
Q |
| |
|
||||||||||||||| |||| | |||| ||||||||||||| |||| | ||| | ||||||||||||||| ||| |||||||||||||||||||| |
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| T |
15015613 |
ttgttttcctacaaacaaaatggtaaacaatgaattggaagatataagtatcaatatgtacaaaatgaatacatcaaatgaagactttggtgtgagaaaa |
15015712 |
T |
|
| Q |
212 |
ggtgaaagaaatgaa |
226 |
Q |
| |
|
| |||||||| |||| |
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| T |
15015713 |
gttgaaagaactgaa |
15015727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 167
Target Start/End: Original strand, 15048253 - 15048403
Alignment:
| Q |
17 |
aacaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctctgtgactccacattcagaaatctctctcaacacaagatattttttg |
116 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||| |||| ||||||| ||||||||| | ||||||||||||||||| |||||||||||||||| |
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| T |
15048253 |
aacaaaaattgcaatgtcacatgaggccaaagacttcttattggctagcagctttgtgactcctccttcagaaatctctctcagcacaagatattttttg |
15048352 |
T |
|
| Q |
117 |
ttttcctacaaataaaacgataaatcatgaattggaagaaataaatgccaa |
167 |
Q |
| |
|
|||||||||||| |||| ||| || | |||| ||||||| ||||||||||| |
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| T |
15048353 |
ttttcctacaaacaaaatgattaaccgtgaactggaagatataaatgccaa |
15048403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 54158964 - 54159114
Alignment:
| Q |
14 |
atgaacaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctctgtgactccacattcagaaatctctctcaacacaagatatttt |
113 |
Q |
| |
|
|||||||| || |||||||||||| ||||||||||||||||| | ||||||||| || | |||||| ||||| ||||||||||| |||||||||||| |
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| T |
54158964 |
atgaacaataattgcaatgtcacaagaggccaaagactccttattcgccagcagccctttaactccatcttcaggaatctctctcagcacaagatatttc |
54159063 |
T |
|
| Q |
114 |
ttgttttcctacaaataaaacgataaatcatgaattggaagaaataaatgc |
164 |
Q |
| |
|
|| ||| ||| |||| |||| |||||| ||| ||| ||||||| |||||| |
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| T |
54159064 |
ttctttccctgcaaacaaaatgataaaacataaatatgaagaaagaaatgc |
54159114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 53868346 - 53868220
Alignment:
| Q |
14 |
atgaacaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctctgtgactccacattcagaaatctctctcaacacaagatatttt |
113 |
Q |
| |
|
|||||| |||||||||| |||||| ||||||||||||| || | |||||||||||| | |||||| ||||| ||| ||||||| |||||||||||| |
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| T |
53868346 |
atgaacgaaaactgcaacgtcacaagaggccaaagacttattattcgccagcagctctctaactccatcttcaggaatttctctcagcacaagatatttc |
53868247 |
T |
|
| Q |
114 |
ttgttttcctacaaataaaacgataaa |
140 |
Q |
| |
|
|||||| ||| |||| |||| |||||| |
|
|
| T |
53868246 |
ttgtttccctgcaaacaaaatgataaa |
53868220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 51365876 - 51366025
Alignment:
| Q |
14 |
atgaacaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctct-gtgactccacattcagaaatctctctcaacacaagatattt |
112 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||| | |||||||| ||| |||||||| |||| ||||||| |||||||||||||||| |
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| T |
51365876 |
atgaacaaaaatggcaatgtcacaagaggccaaagactccttattagccagcagttctcttgactccatcttcatgaatctctttcaacacaagatattt |
51365975 |
T |
|
| Q |
113 |
tttgttttcctacaaataaaacgataaatcatgaattggaagaaataaatgc |
164 |
Q |
| |
|
|||||| ||| ||| | || |||||| |||||| | ||||||| |||||| |
|
|
| T |
51365976 |
cttgtttccctgcaact--aatgataaaacatgaacttgaagaaagaaatgc |
51366025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 36876577 - 36876445
Alignment:
| Q |
18 |
acaaaaactgcaatgtcacatgaggccaaagactccttggtggccagcagctctgtgactccacattcagaaatctctctcaacacaagatattttttgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||| || ||| ||| ||| | ||||||| ||||||| ||||||||| ||| |
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| T |
36876577 |
acaaaaactgcaatgtcacatgaggccaaagactccttgtcggccaccagtcttgcaacttcaccttctggaatctctttcaacacgagatattttctgt |
36876478 |
T |
|
| Q |
118 |
tttcctacaaataaaacgat-aaatcatgaatt |
149 |
Q |
| |
|
|||||| |||| ||||| || |||||||||||| |
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|
| T |
36876477 |
tttcctgcaaacaaaacaataaaatcatgaatt |
36876445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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