View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4048_high_15 (Length: 209)
Name: NF4048_high_15
Description: NF4048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4048_high_15 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 28329014 - 28329057
Alignment:
| Q |
1 |
caaacagaaaaataacatggaggacattaaattcaccgatcctt |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28329014 |
caaacagaaaaataacatggaggacattaaattcaccgatcctt |
28329057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 28506650 - 28506693
Alignment:
| Q |
1 |
caaacagaaaaataacatggaggacattaaattcaccgatcctt |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28506650 |
caaacagaaaaataacatggaggacattaaattcaccgatcctt |
28506693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 28191814 - 28191857
Alignment:
| Q |
1 |
caaacagaaaaataacatggaggacattaaattcaccgatcctt |
44 |
Q |
| |
|
||||||||||||||||||||| || ||| ||||||||||||||| |
|
|
| T |
28191814 |
caaacagaaaaataacatggatgatattcaattcaccgatcctt |
28191857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 191
Target Start/End: Original strand, 28329145 - 28329180
Alignment:
| Q |
156 |
atggaggatattgaattcaccattcataatagttcc |
191 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28329145 |
atggaggatattgaattcaccattcacaatagttcc |
28329180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 156 - 191
Target Start/End: Original strand, 28506781 - 28506816
Alignment:
| Q |
156 |
atggaggatattgaattcaccattcataatagttcc |
191 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28506781 |
atggaggatattgaattcaccattcacaatagttcc |
28506816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University