View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4048_high_16 (Length: 203)
Name: NF4048_high_16
Description: NF4048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4048_high_16 |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0038 (2 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 83 - 184
Target Start/End: Original strand, 54948 - 55049
Alignment:
| Q |
83 |
ataaggatctgtgaatcgaatatcctccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttccaccttcggatgttcacatgta |
182 |
Q |
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|||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54948 |
ataaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttccaccttcggatgttcacatgta |
55047 |
T |
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| Q |
183 |
ac |
184 |
Q |
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|| |
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| T |
55048 |
ac |
55049 |
T |
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Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 83 - 184
Target Start/End: Complemental strand, 28191859 - 28191758
Alignment:
| Q |
83 |
ataaggatctgtgaatcgaatatcctccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttccaccttcggatgttcacatgta |
182 |
Q |
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||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
28191859 |
ataaggatcggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttccactctcggatgttcatatgta |
28191760 |
T |
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| Q |
183 |
ac |
184 |
Q |
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|| |
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| T |
28191759 |
ac |
28191758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 83 - 179
Target Start/End: Complemental strand, 28525678 - 28525582
Alignment:
| Q |
83 |
ataaggatctgtgaatcgaatatcctccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttccaccttcggatgttcacat |
179 |
Q |
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| T |
28525678 |
ataaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttattggttccactaactgatgttcacat |
28525582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 28329059 - 28328982
Alignment:
| Q |
83 |
ataaggatctgtgaatcgaatatcctccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttc |
160 |
Q |
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||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28329059 |
ataaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttc |
28328982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 28506695 - 28506618
Alignment:
| Q |
83 |
ataaggatctgtgaatcgaatatcctccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttc |
160 |
Q |
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||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28506695 |
ataaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttc |
28506618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 83 - 179
Target Start/End: Complemental strand, 28246823 - 28246727
Alignment:
| Q |
83 |
ataaggatctgtgaatcgaatatcctccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttccaccttcggatgttcacat |
179 |
Q |
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|||||||| |||||| ||||||| ||||||||||||| || |||| |||||||||||||||||||||||| ||||||||||| | ||||||||||| |
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| T |
28246823 |
ataaggattggtgaattgaatatcatccatgttattttgctctttgtaaaaatggattccaatttctgttattggttccacctcctgatgttcacat |
28246727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 84 - 176
Target Start/End: Complemental strand, 28239832 - 28239740
Alignment:
| Q |
84 |
taaggatctgtgaatcgaatatcctccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttccaccttcggatgttca |
176 |
Q |
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||||||| |||||| |||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || | ||||||| |
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| T |
28239832 |
taaggattggtgaattgaatgtcatccatgttattttcgtgtttgaaaaaatggattccaatttctgttagtggttccacatttgaatgttca |
28239740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 57; Significance: 5e-24; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 83 - 179
Target Start/End: Complemental strand, 46985 - 46889
Alignment:
| Q |
83 |
ataaggatctgtgaatcgaatatcctccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttccaccttcggatgttcacat |
179 |
Q |
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|||||||| |||||| ||||||| ||||||||||||| || |||| |||||||||||||||||||||||| ||||||||||| | ||||||||||| |
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| T |
46985 |
ataaggattggtgaattgaatatcatccatgttattttgctctttgtaaaaatggattccaatttctgttattggttccacctcctgatgttcacat |
46889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 84 - 176
Target Start/End: Complemental strand, 39994 - 39902
Alignment:
| Q |
84 |
taaggatctgtgaatcgaatatcctccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttccaccttcggatgttca |
176 |
Q |
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||||||| |||||| |||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || | ||||||| |
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| T |
39994 |
taaggattggtgaattgaatgtcatccatgttattttcgtgtttgaaaaaatggattccaatttctgttagtggttccacatttgaatgttca |
39902 |
T |
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