View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4048_high_6 (Length: 469)

Name: NF4048_high_6
Description: NF4048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4048_high_6
NF4048_high_6
[»] chr8 (19 HSPs)
chr8 (266-469)||(39861506-39861713)
chr8 (281-431)||(36731977-36732131)
chr8 (274-431)||(25128588-25128749)
chr8 (299-427)||(5882308-5882437)
chr8 (299-427)||(17450556-17450684)
chr8 (325-431)||(25191402-25191509)
chr8 (338-427)||(25129263-25129353)
chr8 (338-427)||(5881201-5881291)
chr8 (275-429)||(29266165-29266323)
chr8 (304-427)||(36731375-36731497)
chr8 (337-431)||(37437963-37438058)
chr8 (299-359)||(39130994-39131054)
chr8 (337-429)||(29361882-29361975)
chr8 (299-427)||(39860991-39861119)
chr8 (279-429)||(5332068-5332222)
chr8 (433-469)||(36731908-36731944)
chr8 (274-418)||(42987383-42987530)
chr8 (279-429)||(5330901-5331055)
chr8 (274-420)||(42986648-42986798)
[»] chr1 (35 HSPs)
chr1 (274-431)||(21790752-21790913)
chr1 (274-431)||(29858924-29859079)
chr1 (299-427)||(47052374-47052503)
chr1 (299-431)||(44233237-44233370)
chr1 (266-431)||(16960020-16960188)
chr1 (266-431)||(46284748-46284917)
chr1 (266-427)||(27651326-27651490)
chr1 (274-425)||(14886154-14886309)
chr1 (274-427)||(14886726-14886883)
chr1 (299-427)||(48302089-48302218)
chr1 (266-429)||(42986750-42986917)
chr1 (303-425)||(26897033-26897156)
chr1 (274-429)||(2271229-2271388)
chr1 (308-427)||(6690339-6690459)
chr1 (299-427)||(27651998-27652126)
chr1 (274-433)||(46285437-46285600)
chr1 (303-433)||(6690982-6691112)
chr1 (274-427)||(16959505-16959661)
chr1 (308-407)||(26896507-26896607)
chr1 (310-427)||(29859561-29859679)
chr1 (266-427)||(21791380-21791543)
chr1 (316-424)||(48301913-48302022)
chr1 (274-429)||(39848772-39848931)
chr1 (274-429)||(39847810-39847968)
chr1 (274-429)||(47374738-47374897)
chr1 (325-431)||(44234556-44234663)
chr1 (266-431)||(26212912-26213081)
chr1 (299-424)||(42986982-42987108)
chr1 (303-423)||(10716705-10716826)
chr1 (274-423)||(7011966-7012119)
chr1 (274-427)||(5216563-5216718)
chr1 (337-429)||(47374112-47374205)
chr1 (274-429)||(7012930-7013089)
chr1 (433-469)||(21790946-21790982)
chr1 (433-469)||(29859112-29859148)
[»] chr6 (9 HSPs)
chr6 (266-431)||(19653757-19653926)
chr6 (266-427)||(8993481-8993646)
chr6 (266-427)||(9017928-9018093)
chr6 (274-425)||(8992909-8993064)
chr6 (274-425)||(9017356-9017511)
chr6 (274-427)||(18649796-18649952)
chr6 (274-377)||(19651073-19651179)
chr6 (269-377)||(9280840-9280951)
chr6 (274-427)||(32907429-32907584)
[»] chr2 (22 HSPs)
chr2 (79-271)||(4446370-4446564)
chr2 (266-431)||(19386289-19386457)
chr2 (279-431)||(121311-121467)
chr2 (274-427)||(122851-123008)
chr2 (266-427)||(20202644-20202808)
chr2 (266-427)||(8911160-8911323)
chr2 (274-427)||(8911734-8911890)
chr2 (274-427)||(4776249-4776406)
chr2 (299-427)||(19386816-19386944)
chr2 (274-429)||(39629409-39629568)
chr2 (301-427)||(20203197-20203323)
chr2 (308-431)||(44929021-44929145)
chr2 (315-427)||(38956050-38956162)
chr2 (266-429)||(42848711-42848878)
chr2 (274-429)||(42849393-42849552)
chr2 (274-420)||(44926643-44926794)
chr2 (264-429)||(13327736-13327905)
chr2 (337-429)||(39628805-39628898)
chr2 (279-429)||(13328706-13328860)
chr2 (347-428)||(4776905-4776987)
chr2 (274-431)||(38273553-38273714)
chr2 (337-429)||(2477851-2477944)
[»] chr3 (22 HSPs)
chr3 (274-427)||(41710093-41710250)
chr3 (274-431)||(51827564-51827725)
chr3 (303-425)||(41709553-41709676)
chr3 (279-431)||(28907893-28908048)
chr3 (299-427)||(51829382-51829511)
chr3 (274-427)||(53948662-53948818)
chr3 (274-427)||(53949211-53949367)
chr3 (274-427)||(30834328-30834485)
chr3 (268-427)||(28908547-28908710)
chr3 (299-377)||(43400716-43400794)
chr3 (271-390)||(53948506-53948629)
chr3 (274-427)||(38798254-38798410)
chr3 (302-429)||(53949371-53949499)
chr3 (266-431)||(11238510-11238677)
chr3 (274-429)||(47169052-47169211)
chr3 (274-429)||(47167889-47168048)
chr3 (274-429)||(53949972-53950131)
chr3 (346-431)||(30833747-30833832)
chr3 (266-424)||(24485855-24486007)
chr3 (274-363)||(20200570-20200662)
chr3 (274-363)||(20202754-20202846)
chr3 (277-333)||(30833686-30833745)
[»] chr7 (26 HSPs)
chr7 (274-425)||(26774573-26774724)
chr7 (266-431)||(43334620-43334788)
chr7 (299-427)||(3474932-3475061)
chr7 (266-431)||(3163391-3163559)
chr7 (274-427)||(26773996-26774153)
chr7 (299-431)||(30469994-30470126)
chr7 (274-425)||(3475469-3475624)
chr7 (299-427)||(37422589-37422717)
chr7 (274-427)||(3162871-3163027)
chr7 (274-427)||(43334132-43334288)
chr7 (274-431)||(46428012-46428172)
chr7 (266-420)||(30469506-30469663)
chr7 (274-427)||(30659857-30660013)
chr7 (274-429)||(8487703-8487862)
chr7 (299-429)||(21866278-21866409)
chr7 (299-427)||(30660406-30660534)
chr7 (266-429)||(8487023-8487190)
chr7 (266-429)||(8512698-8512865)
chr7 (274-429)||(8513358-8513517)
chr7 (303-417)||(38816720-38816835)
chr7 (266-429)||(25245556-25245724)
chr7 (274-429)||(31178642-31178800)
chr7 (274-429)||(38059849-38060008)
chr7 (337-429)||(28451192-28451285)
chr7 (354-429)||(21865651-21865727)
chr7 (326-420)||(46427550-46427644)
[»] chr5 (9 HSPs)
chr5 (279-431)||(42519647-42519803)
chr5 (274-427)||(42520328-42520485)
chr5 (266-429)||(42521586-42521753)
chr5 (266-429)||(21147992-21148159)
chr5 (274-429)||(23206089-23206248)
chr5 (274-429)||(42520619-42520778)
chr5 (274-429)||(21145938-21146097)
chr5 (354-424)||(31218780-31218851)
chr5 (379-429)||(31219884-31219934)
[»] chr4 (17 HSPs)
chr4 (266-427)||(21824551-21824715)
chr4 (274-431)||(21825041-21825201)
chr4 (274-429)||(42882750-42882909)
chr4 (325-431)||(42883361-42883468)
chr4 (274-429)||(45919513-45919672)
chr4 (302-429)||(45920182-45920310)
chr4 (274-429)||(46619522-46619681)
chr4 (299-429)||(46618380-46618511)
chr4 (299-429)||(42058516-42058645)
chr4 (274-429)||(41695386-41695545)
chr4 (274-429)||(41696015-41696174)
chr4 (274-431)||(4158504-4158665)
chr4 (279-378)||(31915171-31915272)
chr4 (337-429)||(29212062-29212155)
chr4 (397-431)||(4157900-4157934)
chr4 (303-431)||(24377843-24377971)
chr4 (277-333)||(52362743-52362802)
[»] scaffold0155 (2 HSPs)
scaffold0155 (308-431)||(1674-1798)
scaffold0155 (266-427)||(992-1154)
[»] scaffold0009 (2 HSPs)
scaffold0009 (266-429)||(105504-105671)
scaffold0009 (274-429)||(106184-106343)
[»] scaffold0301 (1 HSPs)
scaffold0301 (266-429)||(20724-20889)
[»] scaffold0188 (1 HSPs)
scaffold0188 (274-429)||(25616-25775)
[»] scaffold0853 (2 HSPs)
scaffold0853 (266-429)||(609-771)
scaffold0853 (337-429)||(2219-2312)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 4e-76; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 266 - 469
Target Start/End: Complemental strand, 39861713 - 39861506
Alignment:
Q  266 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 362  Q
    ||||||| |||| ||||||||||||| |||||||  |||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  39861713 atatatgggataggatcaaatgacaccaaggtgtcaaattaaatttaacatcaaatcctaaccattaatccaactttaatctaacgtctctcatcaattc 39861614  T
Q  363 attaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttctctggcaccaatgattgccatttgatttctccc 461  Q
    ||||||||||||| |  ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39861613 attaaattctcacgtgcttgatcaaatgagccaaattttaattttagaaataatttattctttcttctcttgcaccaatgattgccatttgatttctccc 39861514  T
Q  462 actatttt 469  Q
    ||||||||    
T  39861513 actatttt 39861506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 281 - 431
Target Start/End: Complemental strand, 36732131 - 36731977
Alignment:
Q  281 tcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat 377  Q
    ||||||||||| |||||||  |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36732131 tcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat 36732032  T
Q  378 -attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 431  Q
      ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36732031 gcttgatcaaatgagccaaattttaattttagaaataatttattctttcttctct 36731977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 274 - 431
Target Start/End: Original strand, 25128588 - 25128749
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||||||| |||||||| ||||||||||  ||||||||||||||||||||||||     
T  25128588 gataagatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcataaccattaatcaaactttaatccgacgtctctcatcaattcattaaata 25128687  T
Q  371 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 431  Q
     ||| ||| ||||||| ||||  ||||||||||||||| ||||||  |||||||||||||||    
T  25128688 ttcaaatacttgatcatatgatgcaaattttaattttagaaataaaatattctttcttctct 25128749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 299 - 427
Target Start/End: Complemental strand, 5882437 - 5882308
Alignment:
Q  299 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaat 397  Q
    ||||||||||||||  ||||| ||| |||||||||||| ||||||   |||  |||||||||||||||||| |||||||  |||||||||||| ||||||    
T  5882437 aattaaatttgacacaaaatcctaaccattaatccaacattaatccgccgttgctcatcaattcattaaatgctcacatgcttgatcaaatgatccaaat 5882338  T
Q  398 tttaattttaaaaataatttattctttctt 427  Q
    ||||||||||||||||||||||||||||||    
T  5882337 tttaattttaaaaataatttattctttctt 5882308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 299 - 427
Target Start/End: Original strand, 17450556 - 17450684
Alignment:
Q  299 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatattgatcaaatgagccaaatt 398  Q
    |||||||||||||| |||||||||| ||||||| |||||||||||  |||||||||||||||||||||||| |||||||  | ||||||| | | || ||    
T  17450556 aattaaatttgacaccaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattaaatgctcacatgcttatcaaattatctaattt 17450655  T
Q  399 ttaattttaaaaataatttattctttctt 427  Q
    ||||||||| ||| |||||||||||||||    
T  17450656 ttaattttagaaacaatttattctttctt 17450684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 325 - 431
Target Start/End: Complemental strand, 25191509 - 25191402
Alignment:
Q  325 cattaatccaactttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctt 423  Q
    |||||||||||||||||||  ||||| |||||||||||| |||||  ||||||  |||||||| |||  ||||||||||||||| |||||||||||||||    
T  25191509 cattaatccaactttaatccgacgtccctcatcaattcagtaaatgttcacatgcttgatcaactgattcaaattttaattttagaaataatttattctt 25191410  T
Q  424 tcttctct 431  Q
    ||||||||    
T  25191409 tcttctct 25191402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 338 - 427
Target Start/End: Complemental strand, 25129353 - 25129263
Alignment:
Q  338 ttaatctaacgtctctcatcaattcattaaattctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
    |||||| ||||||||||||||||||||||||| ||||||| || ||| |||||| |||||||||||||||| |||||||||||| ||||||    
T  25129353 ttaatccaacgtctctcatcaattcattaaatgctcacatgtttgatgaaatgatccaaattttaattttagaaataatttattatttctt 25129263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 338 - 427
Target Start/End: Original strand, 5881201 - 5881291
Alignment:
Q  338 ttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
    |||||| ||||||||||||||||||||||||| |||||||  ||||| |||||| ||||| |||||||||| ||||||| |||||||||||    
T  5881201 ttaatccaacgtctctcatcaattcattaaatgctcacatgcttgatgaaatgatccaaactttaattttagaaataatgtattctttctt 5881291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 275 - 429
Target Start/End: Original strand, 29266165 - 29266323
Alignment:
Q  275 atatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattc 371  Q
    |||| |||||||||||| |||||||  ||||||||||||||||||||| |||  |||||| | | |||||||||||| ||| ||| || ||||||| |      
T  29266165 atataatcaaatgacaccaaggtgtcaaattaaatttgacatcaaatcctaactattaatacgattttaatctaacggctcccataaactcattaagtat 29266264  T
Q  372 tcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    | ||||  |||||||||||| |||  ||||| ||||| |||||||||||||||||||||    
T  29266265 ttacatgcttgatcaaatgacccactttttatttttagaaataatttattctttcttct 29266323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 304 - 427
Target Start/End: Original strand, 36731375 - 36731497
Alignment:
Q  304 aatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatattgatcaaatgagccaaattttaat 403  Q
    ||||||||| |||||| ||| ||||||| |||| ||||||  ||||||| ||||||||||||||||  ||| ||  |  |||||| | ||||| ||||||    
T  36731375 aatttgacaccaaatcttaaccattaattcaaccttaatccgacgtctcccatcaattcattaaatgttcatatgct-ttcaaataatccaaaatttaat 36731473  T
Q  404 tttaaaaataatttattctttctt 427  Q
    ||||||||||||||||||||||||    
T  36731474 tttaaaaataatttattctttctt 36731497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 337 - 431
Target Start/End: Original strand, 37437963 - 37438058
Alignment:
Q  337 tttaatctaacgtctctcatcaattcattaaattctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 431  Q
    |||||||||||| ||| ||||||||||||| || |||||||||| |||||||| | |||  ||||||||||| |||||||||||||||| ||||||    
T  37437963 tttaatctaacggctcccatcaattcattagatgctcacatatttgatcaaattatccatcttttaattttagaaataatttattcttttttctct 37438058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 359
Target Start/End: Complemental strand, 39131054 - 39130994
Alignment:
Q  299 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaa 359  Q
    |||||||||||||| |||||||||| |||||||| ||||||||||  ||||||||||||||    
T  39131054 aattaaatttgacaccaaatcataaccattaatcaaactttaatccgacgtctctcatcaa 39130994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 429
Target Start/End: Original strand, 29361882 - 29361975
Alignment:
Q  337 tttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||||||||| ||| |||||||||||||| | || ||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  29361882 tttaatctaacggctcccatcaattcattaagtgctaacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttcttct 29361975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 427
Target Start/End: Original strand, 39860991 - 39861119
Alignment:
Q  299 aattaaatttgacatcaaatcataatcattaatccaact-ttaatctaacgtctctcatcaattcattaaattctcacatattgatcaaatgagccaaat 397  Q
    |||| ||||||| || ||||| ||| ||||||| ||||  ||||||  ||||||| |||||||||||||||| |||||||  |  |||||| | |||||     
T  39860991 aatttaatttgatattaaatcttaaccattaattcaaccattaatccgacgtctcccatcaattcattaaatgctcacatgctt-tcaaataatccaaaa 39861089  T
Q  398 tttaattttaaaaataatttattctttctt 427  Q
    ||||||||||  ||||||||||||||||||    
T  39861090 tttaattttagtaataatttattctttctt 39861119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 429
Target Start/End: Complemental strand, 5332222 - 5332068
Alignment:
Q  279 gatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcac 375  Q
    ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||| ||| || |||||||   |||||    
T  5332222 gatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctcccataaactcattaagagctcac 5332123  T
Q  376 ata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    ||  |||||||| |||  ||  ||||| ||||| |||||||||||||||||||||    
T  5332122 atgcttgatcaagtgactcaccttttatttttagaaataatttattctttcttct 5332068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 433 - 469
Target Start/End: Complemental strand, 36731944 - 36731908
Alignment:
Q  433 gcaccaatgattgccatttgatttctcccactatttt 469  Q
    |||||||| ||||||||||||||||||||||||||||    
T  36731944 gcaccaatcattgccatttgatttctcccactatttt 36731908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 418
Target Start/End: Complemental strand, 42987530 - 42987383
Alignment:
Q  274 gatatgatcaaatgacacaaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattc 371  Q
    |||| |||||||||||||  |||||  ||||||| |||||| |||||| |||  ||||||  |  |||||||||| |  || |||||||||||||| | |    
T  42987530 gataagatcaaatgacaccgggtgtcaaattaaacttgacaccaaatcctaactattaatatagttttaatctaaaggttcacatcaattcattaagtgc 42987431  T
Q  372 tcacata-ttgatcaaatgagccaaattttaattttaaaaataattta 418  Q
    ||| ||  |||||||| ||| |||  ||||||||||||||||||||||    
T  42987430 tcatatgcttgatcaagtgacccaccttttaattttaaaaataattta 42987383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 429
Target Start/End: Original strand, 5330901 - 5331055
Alignment:
Q  279 gatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcac 375  Q
    ||||||||||||| |||||||  |||||||||||||| |||||  ||  ||||||| |   |||||||||||| ||| ||| || ||||||| | |||||    
T  5330901 gatcaaatgacaccaaggtgttaaattaaatttgacaccaaattctagccattaatacggttttaatctaacggctcccataaactcattaagtgctcac 5331000  T
Q  376 at-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    ||  |||||||| ||| |||  ||||| ||||| ||||||||||  |||||||||    
T  5331001 atgcttgatcaagtgacccaccttttatttttagaaataatttaaactttcttct 5331055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 420
Target Start/End: Original strand, 42986648 - 42986798
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| || ||||  |||||||||||||| |||||||||  |||||||     |||||| ||| | ||||||| |||||||||| |     
T  42986648 gataggatcaaatgacaccaaagtgtcaaattaaatttgacaccaaatcatagccattaataatgttttaatttaatggctctcattaattcattaagtg 42986747  T
Q  371 ctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttatt 420  Q
    ||| ||| || |||||| ||| |||  ||||||||||| ||||||||||||    
T  42986748 ctcgcatgtttgatcaagtgacccaccttttaattttataaataatttatt 42986798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 8e-56; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 274 - 431
Target Start/End: Original strand, 21790752 - 21790913
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21790752 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcataaccattaatccaactttaatctaacgtctctcatcaattcattaaatt 21790851  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 431  Q
    |||||||  ||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  21790852 ctcacatgcttgatcaaatgagccaaattttaattttagaaataattaattctttcttctct 21790913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 274 - 431
Target Start/End: Original strand, 29858924 - 29859079
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| ||| |||  |||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  29858924 gataggatcaaatgacaccaagatgtcaaattaaatttgacaccaaatcataaccattaatccaactttaatctaacgtctcgcatcaattcattaaatt 29859023  T
Q  371 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 431  Q
    ||||||     |||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  29859024 ctcaca-----atcaaatgagtcaaattttaattttagaaataatttattctttcttctct 29859079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 299 - 427
Target Start/End: Original strand, 47052374 - 47052503
Alignment:
Q  299 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaat 397  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||||||  |||||||||||| | ||||    
T  47052374 aattaaatttgacaccaaatcataaccattaattcaactttaatccaacgtctctcatcaattcattaaatgctcacatgcttgatcaaatgatctaaat 47052473  T
Q  398 tttaattttaaaaataatttattctttctt 427  Q
    |||||||||||||| |||||||||||||||    
T  47052474 tttaattttaaaaacaatttattctttctt 47052503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 299 - 431
Target Start/End: Original strand, 44233237 - 44233370
Alignment:
Q  299 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaat 397  Q
    ||||||||||||||||||||  |||  ||||||||||||||||||| |||||||||||||||| ||||||| |||||||  |||||||||||| ||||||    
T  44233237 aattaaatttgacatcaaattctaacaattaatccaactttaatctgacgtctctcatcaatttattaaatgctcacatgcttgatcaaatgatccaaat 44233336  T
Q  398 tttaattttaaaaataatttattctttcttctct 431  Q
    ||||||||||||||||||||||| ||| ||||||    
T  44233337 tttaattttaaaaataatttattatttattctct 44233370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 266 - 431
Target Start/End: Complemental strand, 16960188 - 16960020
Alignment:
Q  266 atatatgagatatgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 362  Q
    ||||||| |||| |||||||||||| || |||||  |||||||||||||| |||||||||| ||||||| ||||||||||| ||||||| ||||||||||    
T  16960188 atatatgggataggatcaaatgacatcatggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccaacgtctatcatcaattc 16960089  T
Q  363 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 431  Q
    ||||||| |||||||  |||||||||| | |||||||||||||||| ||| ||||| |||||||||||||    
T  16960088 attaaatgctcacatgcttgatcaaattatccaaattttaattttagaaacaattt-ttctttcttctct 16960020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 266 - 431
Target Start/End: Original strand, 46284748 - 46284917
Alignment:
Q  266 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 362  Q
    ||||||| |||| ||||||||||||| || ||||  ||||||||||||||||||||| ||| |||||||||||||||||||  |||||||||| ||||||    
T  46284748 atatatgggataggatcaaatgacaccaaagtgtcaaattaaatttgacatcaaatcctaaccattaatccaactttaatccgacgtctctcaacaattc 46284847  T
Q  363 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 431  Q
    ||||||| || ||||  ||||||||||||  ||||||||||||||| ||||||  |||||||||||||||    
T  46284848 attaaatgcttacatgcttgatcaaatgatgcaaattttaattttagaaataaaatattctttcttctct 46284917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 266 - 427
Target Start/End: Original strand, 27651326 - 27651490
Alignment:
Q  266 atatatgagatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 362  Q
    ||||||| |||||||||||||||||| | |||||  ||||||||||||||  ||||||||| ||||||| |||||||||||  |||||||||||||||||    
T  27651326 atatatgggatatgatcaaatgacaccatggtgtcaaattaaatttgacactaaatcataaccattaattcaactttaatccgacgtctctcatcaattc 27651425  T
Q  363 attaaattctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
    ||||||| |||||||| | ||||||| | | || ||||||||||| ||| |||||||||||||||    
T  27651426 attaaatgctcacatacttatcaaattatctaatttttaattttagaaacaatttattctttctt 27651490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 274 - 425
Target Start/End: Original strand, 14886154 - 14886309
Alignment:
Q  274 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| | |||||  ||| |||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||     
T  14886154 gataggatcaaatgacaccatggtgtcaaatcaaatttgacaccaaatcataaccattaatccaactttaatctgacgtctctcatcaattcattaaatg 14886253  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttc 425  Q
    |||||||  |||||||||| | | |||||||||||||| ||| |||||||||||||    
T  14886254 ctcacatgcttgatcaaattatctaaattttaattttagaaacaatttattctttc 14886309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 274 - 427
Target Start/End: Complemental strand, 14886883 - 14886726
Alignment:
Q  274 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| | |||||  |||||||||||||| |||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||     
T  14886883 gataggatcaaatgacaccatggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccaacgtctctcatcaattcattaaatg 14886784  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
     ||||||  |||| ||||||| | |||||||||||||| ||| |||||||||||||||    
T  14886783 ttcacatgcttgagcaaatgatctaaattttaattttagaaacaatttattctttctt 14886726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 299 - 427
Target Start/End: Complemental strand, 48302218 - 48302089
Alignment:
Q  299 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaat 397  Q
    |||||||||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||  |||||||||| | | | ||    
T  48302218 aattaaatttgacaccaaaccataaccattaatccaactttaatctcacgtctctcatcaattcattaaatgctcacatgtttgatcaaattatctacat 48302119  T
Q  398 tttaattttaaaaataatttattctttctt 427  Q
    |||||||||| ||| |||||||||||||||    
T  48302118 tttaattttagaaacaatttattctttctt 48302089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 266 - 429
Target Start/End: Original strand, 42986750 - 42986917
Alignment:
Q  266 atatatgagatatgatcaaatgacac-aaggtgtaa--ttaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 362  Q
    |||||||||||||||||||||||||| ||| |||||  |||||||||||| |||||| || |||||||| |   |||||||||| | ||||||| |||||    
T  42986750 atatatgagatatgatcaaatgacaccaagatgtaaaattaaatttgacaccaaatcttagtcattaatactcatttaatctaatggctctcattaattc 42986849  T
Q  363 attaaattctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    ||||| | ||||||| || |||||||||| |||  |||||||||||||||||||||||||||||||||    
T  42986850 attaagtgctcacatgtttgatcaaatgatccaccttttaattttaaaaataatttattctttcttct 42986917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 303 - 425
Target Start/End: Complemental strand, 26897156 - 26897033
Alignment:
Q  303 aaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaatttta 401  Q
    |||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| ||  |||||||||| | | ||||||||    
T  26897156 aaatttgacaccaaatcataaccattaatccaactttaatctgacgtctctcatcaattcattaaatactcatatgcttgatcaaattatctaaatttta 26897057  T
Q  402 attttaaaaataatttattctttc 425  Q
    |||||| ||| |||||||||||||    
T  26897056 attttagaaacaatttattctttc 26897033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 274 - 429
Target Start/End: Complemental strand, 2271388 - 2271229
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||||||||||||||||| || ||||  ||||||||||||||  ||||| ||| |||||||||||||||||||  ||||| ||||||||||||||| ||     
T  2271388 gatatgatcaaatgacaccaatgtgtcaaattaaatttgacactaaatcctaaccattaatccaactttaatccgacgtccctcatcaattcattagatg 2271289  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
     ||||||  |||||||||||| | ||| |||||||||| ||||||| |||||||||||||    
T  2271288 ttcacatgcttgatcaaatgatcaaaaatttaattttagaaataatgtattctttcttct 2271229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 308 - 427
Target Start/End: Original strand, 6690339 - 6690459
Alignment:
Q  308 tgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaattttaatttt 406  Q
    |||||||||||| ||| |||||||||||||||||||  ||||  |||||||||| ||||||| |||||||  |||||||||||| |||||||||||||||    
T  6690339 tgacatcaaatcctaaccattaatccaactttaatccgacgttgctcatcaatttattaaatgctcacatgcttgatcaaatgatccaaattttaatttt 6690438  T
Q  407 aaaaataatttattctttctt 427  Q
    | |||||||||||| ||||||    
T  6690439 agaaataatttattatttctt 6690459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 299 - 427
Target Start/End: Complemental strand, 27652126 - 27651998
Alignment:
Q  299 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatattgatcaaatgagccaaatt 398  Q
    |||||||||||||| |||||||||| ||||||| |||||||||||  |||| ||||||||||||||||||| |||||||  | ||||||| | | |||||    
T  27652126 aattaaatttgacaccaaatcataaccattaattcaactttaatccgacgtttctcatcaattcattaaatgctcacatgcttatcaaattatctaaatt 27652027  T
Q  399 ttaattttaaaaataatttattctttctt 427  Q
    ||||||||| ||| ||||| |||||||||    
T  27652026 ttaattttagaaacaatttgttctttctt 27651998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 274 - 433
Target Start/End: Complemental strand, 46285600 - 46285437
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||||||||||||||||| |||||||  |||||||||||||| |||||| ||| |||||||||||| | |||   ||||   |||||||||||||||||     
T  46285600 gatatgatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctaaccattaatccaacgtaaattcgacgttgatcatcaattcattaaatg 46285501  T
Q  371 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttctctgg 433  Q
    |||| ||  |||||||||| | |||||||||||||||| ||||||||||||||||||| |||||    
T  46285500 ctcaaatgcttgatcaaattatccaaattttaattttagaaataatttattctttcttttctgg 46285437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 303 - 433
Target Start/End: Complemental strand, 6691112 - 6690982
Alignment:
Q  303 aaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaatttta 401  Q
    |||||||||| |||||||||| |||||||||||||||||||  | |||||||| ||||||||||||| |||||||  ||||||||||||  |||||||||    
T  6691112 aaatttgacaccaaatcataaccattaatccaactttaatccgatgtctctcaacaattcattaaatactcacatgtttgatcaaatgattcaaatttta 6691013  T
Q  402 attttaaaaataatttattctttcttctctgg 433  Q
    | |||| ||||||  |||||||||||||||||    
T  6691012 a-tttagaaataaaatattctttcttctctgg 6690982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 274 - 427
Target Start/End: Original strand, 16959505 - 16959661
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| |||||||| |||| |||||||  ||||||||||||||  ||||| ||| |||||||||| ||||||||| |||||||||||||| |||||||||     
T  16959505 gataggatcaaataacaccaaggtgtcaaattaaatttgacactaaatcctaaccattaatcca-ctttaatctgacgtctctcatcaaatcattaaatg 16959603  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
    |||||||  |||| ||||| | |||||||||||||||| ||||||||||||| |||||    
T  16959604 ctcacatgtttgaacaaataatccaaattttaattttagaaataatttattccttctt 16959661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 308 - 407
Target Start/End: Original strand, 26896507 - 26896607
Alignment:
Q  308 tgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaattttaatttt 406  Q
    ||||| ||||||||||  |||||| ||||||||||| ||||||||||||||||||||||||| |||||||  |||||||||||| | |||||||||||||    
T  26896507 tgacaccaaatcataactattaattcaactttaatccaacgtctctcatcaattcattaaatgctcacatgcttgatcaaatgatctaaattttaatttt 26896606  T
Q  407 a 407  Q
    |    
T  26896607 a 26896607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 310 - 427
Target Start/End: Complemental strand, 29859679 - 29859561
Alignment:
Q  310 acatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatat-tgatcaaatgagccaaattttaattttaa 408  Q
    |||||||||  ||| |||| || || ||||||||  | ||||| |||||||||||||||| |||||||   |||||||||||| ||||||||||||||||    
T  29859679 acatcaaattttaaccattcattcatctttaatccgatgtctcccatcaattcattaaatgctcacatgcatgatcaaatgagacaaattttaattttaa 29859580  T
Q  409 aaataatttattctttctt 427  Q
    |||||||||||||||||||    
T  29859579 aaataatttattctttctt 29859561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 266 - 427
Target Start/End: Complemental strand, 21791543 - 21791380
Alignment:
Q  266 atatatgagatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 362  Q
    ||||||| |||| ||||||||||||| | |||||  |||||||||||||| |||||| ||| ||||||| |||| ||||||  ||||||| | |||||||    
T  21791543 atatatgggataggatcaaatgacaccatggtgtcaaattaaatttgacaccaaatcttaaccattaattcaaccttaatccgacgtctcccgtcaattc 21791444  T
Q  363 attaaattctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
    |||||||  ||||||  |  |||||| | ||||| |||||||||| |||||||||||||||||||    
T  21791443 attaaatgttcacatgct-ttcaaataatccaaaatttaattttagaaataatttattctttctt 21791380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 316 - 424
Target Start/End: Original strand, 48301913 - 48302022
Alignment:
Q  316 aatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataa 414  Q
    ||||||||||||||||  ||||||||||| | ||||||||||||||| |||||| |||||||  |||||||||||| | |||||||||||||| ||  ||    
T  48301913 aatcataatcattaattaaactttaatctgatgtctctcatcaattcgttaaatgctcacatgcttgatcaaatgatctaaattttaattttagaatcaa 48302012  T
Q  415 tttattcttt 424  Q
    ||||||||||    
T  48302013 tttattcttt 48302022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 274 - 429
Target Start/End: Complemental strand, 39848931 - 39848772
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| ||  |||||||||||| ||||||| || ||||||| |     
T  39848931 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacagttttaatctaacggctctcataaactcattaagtg 39848832  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  39848831 ctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattctttcttct 39848772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 274 - 429
Target Start/End: Original strand, 39847810 - 39847968
Alignment:
Q  274 gatatgatcaaatgacacaaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattc 371  Q
    |||| ||||||||||||| | ||||  |||||||||||||| |||||| || |||||||| |   |||||||||||| ||||||| || ||||||| |      
T  39847810 gataggatcaaatgacaccaagtgtcaaattaaatttgacaccaaatcctagtcattaatacggttttaatctaacggctctcataaactcattaagtgt 39847909  T
Q  372 tcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    ||||||  |||||||| ||| |||  ||||| |||||||||||||||||||||||||||    
T  39847910 tcacatgcttgatcaagtgacccaccttttatttttaaaaataatttattctttcttct 39847968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 429
Target Start/End: Complemental strand, 47374897 - 47374738
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| |||| || |||||||||| |     
T  47374897 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatactgttttaatctaacggctcttattaattcattaagtg 47374798  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||||  |||||||| |||  ||  ||||| ||||| |||||||||||||||||||||    
T  47374797 ctcacatgcttgatcaagtgacacatcttttatttttataaataatttattctttcttct 47374738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 325 - 431
Target Start/End: Complemental strand, 44234663 - 44234556
Alignment:
Q  325 cattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctt 423  Q
    |||||||||||||||||| | |||| | |||| |||| |||||||  |||||| || |||||||||| || ||||||||||||| |||||||||||| ||    
T  44234663 cattaatccaactttaatatgacgtttttcataaatttattaaatgatcacatgtttgatcaaatgatccgaattttaattttagaaataatttattatt 44234564  T
Q  424 tcttctct 431  Q
    | ||||||    
T  44234563 ttttctct 44234556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 266 - 431
Target Start/End: Original strand, 26212912 - 26213081
Alignment:
Q  266 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 362  Q
    ||||||| |||| ||||||||||||| |||||||  ||| |||||||||| |||||| ||  |||||||  |  ||||||| |||| |||| |||||||     
T  26212912 atatatgggataggatcaaatgacactaaggtgtcaaataaaatttgacaccaaatcttatccattaatatagttttaatccaacggctctaatcaattt 26213011  T
Q  363 attaaattctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 431  Q
      ||| | |||||||||| ||| ||||||||||  ||||||||||| ||| ||| |||||||||||||||    
T  26213012 tataagtgctcacatatttgattaaatgagccaccttttaattttagaaacaatctattctttcttctct 26213081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 299 - 424
Target Start/End: Complemental strand, 42987108 - 42986982
Alignment:
Q  299 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaat 397  Q
    ||||||||||||||||||||| ||| |||||||  |  |||||||||| |  || |||||||||||||| |  ||||||  |||||||| ||| |||  |    
T  42987108 aattaaatttgacatcaaatcctaaccattaatatagttttaatctaaaggttcacatcaattcattaagtgttcacatgcttgatcaagtgacccacct 42987009  T
Q  398 tttaattttaaaaataatttattcttt 424  Q
    |||||||||| ||||||||||||||||    
T  42987008 tttaattttagaaataatttattcttt 42986982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 423
Target Start/End: Original strand, 10716705 - 10716826
Alignment:
Q  303 aaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaatttta 401  Q
    |||||| ||| |||||  ||||||||||| | | |||||||||||| ||| |||||||||||||| | |||||||  |||||||| ||| |||  |||||    
T  10716705 aaatttaacaccaaattctaatcattaatacgattttaatctaacggctcccatcaattcattaagtgctcacatgcttgatcaagtgacccatctttta 10716804  T
Q  402 attttaaaaataatttattctt 423  Q
     ||||| |||||||||||||||    
T  10716805 tttttagaaataatttattctt 10716826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 274 - 423
Target Start/End: Original strand, 7011966 - 7012119
Alignment:
Q  274 gatatgatcaaatgacaca-aggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    ||||||||||||||||||  ||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||| ||| || ||||||| |     
T  7011966 gatatgatcaaatgacaccgaggtgtcaaattaaatttgacaccaaatcctagccattaattcgggtttaatctaacggctcccataaactcattaagtg 7012065  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctt 423  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||    
T  7012066 ctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattctt 7012119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 427
Target Start/End: Original strand, 5216563 - 5216718
Alignment:
Q  274 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| | |||||  |||||||||||| | |||||| ||| ||||||| |||| ||||||  ||||||| | ||||||||||||||     
T  5216563 gataggatcaaatgacaccatggtgtcaaattaaatttgataccaaatcttaaccattaattcaaccttaatccgacgtctcccgtcaattcattaaatg 5216662  T
Q  371 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
     ||||||  |  |||||| |  |||| |||||||||| |||||||||||| ||||||    
T  5216663 ttcacatgct-ttcaaataattcaaaatttaattttagaaataatttattatttctt 5216718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 429
Target Start/End: Original strand, 47374112 - 47374205
Alignment:
Q  337 tttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||||||||| ||  |||||||||||||| | |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  47374112 tttaatctaacggcttccatcaattcattaagtgctcacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttcttct 47374205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 429
Target Start/End: Complemental strand, 7013089 - 7012930
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| |||  || || ||||| | |     
T  7013089 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctccgataaactcattgagtg 7012990  T
Q  371 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  7012989 ctcacatgcttgatcaagtgacccactttttatttttagaaataatttattctttcttct 7012930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 433 - 469
Target Start/End: Original strand, 21790946 - 21790982
Alignment:
Q  433 gcaccaatgattgccatttgatttctcccactatttt 469  Q
    |||||||||||||||||||||||||||||||||||||    
T  21790946 gcaccaatgattgccatttgatttctcccactatttt 21790982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 433 - 469
Target Start/End: Original strand, 29859112 - 29859148
Alignment:
Q  433 gcaccaatgattgccatttgatttctcccactatttt 469  Q
    |||||||||||||||||||||||||||||||||||||    
T  29859112 gcaccaatgattgccatttgatttctcccactatttt 29859148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 3e-46; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 266 - 431
Target Start/End: Complemental strand, 19653926 - 19653757
Alignment:
Q  266 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 362  Q
    ||||||| |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||| |||||||||||||||||||| |||||||||||||||||    
T  19653926 atatatgggataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctaaccattaatccaactttaatctgacgtctctcatcaattc 19653827  T
Q  363 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 431  Q
    ||||||| |||| ||  || ||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  19653826 attaaatgctcatatgtttaatcaaatgatccaaattttaattttagaaataatttattctttcttctct 19653757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 266 - 427
Target Start/End: Complemental strand, 8993646 - 8993481
Alignment:
Q  266 atatatgagatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 362  Q
    ||||||| |||| ||||||||||||| | |||||  |||||||||||||| |||||||||| ||||||| ||||||||||| ||||||||||||| ||||    
T  8993646 atatatgggataggatcaaatgacaccacggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccaacgtctctcatccattc 8993547  T
Q  363 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
     |||||| |||||||  |||||||||||| | |||||||||||||| ||| |||||||||||||||    
T  8993546 tttaaatgctcacatgtttgatcaaatgatctaaattttaattttagaaacaatttattctttctt 8993481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 266 - 427
Target Start/End: Complemental strand, 9018093 - 9017928
Alignment:
Q  266 atatatgagatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 362  Q
    ||||||| |||| ||||||||||||| | |||||  |||||||||||||| |||||||||| ||||||| ||||||||||| ||||||||||||| ||||    
T  9018093 atatatgggataggatcaaatgacaccacggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccaacgtctctcatccattc 9017994  T
Q  363 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
     |||||| |||||||  |||||||||||| | |||||||||||||| ||| |||||||||||||||    
T  9017993 tttaaatgctcacatgtttgatcaaatgatctaaattttaattttagaaacaatttattctttctt 9017928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 274 - 425
Target Start/End: Original strand, 8992909 - 8993064
Alignment:
Q  274 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| | |||||  ||||||||||||||  ||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||     
T  8992909 gataggatcaaatgacaccatggtgtcaaattaaatttgacactaaatcataaccattaattcaactttaatccaacgtctctcatcaattcattaaata 8993008  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttc 425  Q
    |||||||  |||||||||| | | |||||||||||||| ||| |||||||||||||    
T  8993009 ctcacatgcttgatcaaattatctaaattttaattttagaaacaatttattctttc 8993064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 274 - 425
Target Start/End: Original strand, 9017356 - 9017511
Alignment:
Q  274 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| | |||||  ||||||||||||||  ||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||     
T  9017356 gataggatcaaatgacaccatggtgtcaaattaaatttgacactaaatcataaccattaattcaactttaatccaacgtctctcatcaattcattaaata 9017455  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttc 425  Q
    |||||||  |||||||||| | | |||||||||||||| ||| |||||||||||||    
T  9017456 ctcacatgcttgatcaaattatctaaattttaattttagaaacaatttattctttc 9017511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 274 - 427
Target Start/End: Complemental strand, 18649952 - 18649796
Alignment:
Q  274 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| | |||||  |||||||||||||| |||||||||| ||||||| |||||||||||  |||||||||||||||||||| |||     
T  18649952 gataggatcaaatgacaccatggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattgaatg 18649853  T
Q  371 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
    |||||||  | | ||||| | | |||||||||||||| ||| |||||||||||||||    
T  18649852 ctcacatgcttaacaaattatctaaattttaattttagaaacaatttattctttctt 18649796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 274 - 377
Target Start/End: Original strand, 19651073 - 19651179
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||     
T  19651073 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctaatcattaatccaactttaatctgacgtctctcattaattcattaaatg 19651172  T
Q  371 ctcacat 377  Q
    |||||||    
T  19651173 ctcacat 19651179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 269 - 377
Target Start/End: Complemental strand, 9280951 - 9280840
Alignment:
Q  269 tatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcatt 365  Q
    |||| |||| ||||||||||||| || ||||  |||||||||||||| ||||||  ||||||||||||||||||||||||| |||||||||||||| |||    
T  9280951 tatgcgataggatcaaatgacaccaatgtgtcaaattaaatttgacaccaaatccaaatcattaatccaactttaatctaaagtctctcatcaatttatt 9280852  T
Q  366 aaattctcacat 377  Q
    ||||||||||||    
T  9280851 aaattctcacat 9280840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 274 - 427
Target Start/End: Original strand, 32907429 - 32907584
Alignment:
Q  274 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| | |||||  |||| ||||||||| |||||| ||| ||||||| |||| ||||||| ||||||| |||||||||||||||      
T  32907429 gataggatcaaatgacaccatggtgtcaaatttaatttgacaccaaatcttaaccattaattcaaccttaatctgacgtctcccatcaattcattaaagg 32907528  T
Q  371 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
    |||||||  |  |||||| | ||||| |||||||||| |||||||||||||||||||    
T  32907529 ctcacatgct-ttcaaataatccaaaatttaattttagaaataatttattctttctt 32907584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 79 - 271
Target Start/End: Original strand, 4446370 - 4446564
Alignment:
Q  79 gtgcgctggatcagtggcatcccgtggatcatgttttatgtattcgcaaaaattgatgtccaa-ctcattgtttttggattgtataattcgaactaggtt 177  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| || |||||||||| |||||||||| |||| ||||||    
T  4446370 gtgcactggatcagtggcatcccgtggataatgttttatgtattcgcaaaaattgctgtgcaaactgattgtttttgaattgtataatccgaagtaggtt 4446469  T
Q  178 tcatattttaaaatctgaagagtatttttg-nnnnnnntagagcgcctgaaaaacacatagggtgtgaaaagtaagaattagtctattcatatat 271  Q
    |||||||||||||||| |||||||||||||        ||||||   ||| |||||| |||| ||||||||||||||||||| ||| ||||||||    
T  4446470 tcatattttaaaatctaaagagtatttttgaaaaaaaatagagcatgtgagaaacacgtaggatgtgaaaagtaagaattagcctactcatatat 4446564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 266 - 431
Target Start/End: Original strand, 19386289 - 19386457
Alignment:
Q  266 atatatgagatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 362  Q
    ||||||| |||||||||||||||||| | |||||  |||||||||||||| |||||||||| ||||||| ||||||||||| ||| ||| | ||||||||    
T  19386289 atatatgggatatgatcaaatgacaccatggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccaacatctattatcaattc 19386388  T
Q  363 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 431  Q
    ||||||| |||||||  |||||||||||| |||||||||||||||| ||| ||||| |||||||||||||    
T  19386389 attaaatgctcacatgcttgatcaaatgatccaaattttaattttagaaacaattt-ttctttcttctct 19386457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 279 - 431
Target Start/End: Original strand, 121311 - 121467
Alignment:
Q  279 gatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcac 375  Q
    ||||||||||||| |||||||  ||||||||||||||  ||||||||| |||||||| ||||||||||  |||||||||||||||||||||||| ||||     
T  121311 gatcaaatgacactaaggtgtcaaattaaatttgacactaaatcataaccattaatcaaactttaatccgacgtctctcatcaattcattaaatactcaa 121410  T
Q  376 ata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 431  Q
    ||| ||||||||||||  ||||||||||||||| ||||||  |||||||||||||||    
T  121411 atacttgatcaaatgatgcaaattttaattttagaaataaaatattctttcttctct 121467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 274 - 427
Target Start/End: Complemental strand, 123008 - 122851
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||  ||| ||||||| |||| |||||| |||||||||||||||||||||||||     
T  123008 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaattctaaccattaattcaacattaatccaacgtctctcatcaattcattaaatg 122909  T
Q  371 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
    |||||||| ||||| |||||| ||||| |||||||||| ||||||| |||||||||||    
T  122908 ctcacatacttgatgaaatgatccaaactttaattttagaaataatgtattctttctt 122851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 266 - 427
Target Start/End: Original strand, 20202644 - 20202808
Alignment:
Q  266 atatatgagatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 362  Q
    ||||||| |||| |||||||||||||   |||||  |||||||||||||| |||||||||| ||||||| |||||||||||  |||||||||||||||||    
T  20202644 atatatgggataggatcaaatgacaccgtggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccgacgtctctcatcaattc 20202743  T
Q  363 attaaattctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
    ||||||| |||||||  | ||||||| | | || ||||||||||| ||| |||||||||||||||    
T  20202744 attaaatgctcacatgcttatcaaattatctaatttttaattttagaaacaatttattctttctt 20202808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 266 - 427
Target Start/End: Original strand, 8911160 - 8911323
Alignment:
Q  266 atatatgagatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 362  Q
    |||||||||||| ||||||||||||| | |||||  ||||| |||||||| |||||||||| ||||||| |||||||||||  |||||||||||||| ||    
T  8911160 atatatgagataggatcaaatgacaccatggtgtcaaattatatttgacaccaaatcataaccattaattcaactttaatccgacgtctctcatcaa-tc 8911258  T
Q  363 attaaattctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
    ||||||| |||||||  | ||||||| | | || ||||||||||| ||| |||||||||||||||    
T  8911259 attaaatactcacatgcttatcaaattatctaatttttaattttagaaacaatttattctttctt 8911323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 274 - 427
Target Start/End: Complemental strand, 8911890 - 8911734
Alignment:
Q  274 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| | |||||  |||||||||||||| |||||||||| ||||||| |||||||||||  |||| |  ||||||||||||||||     
T  8911890 gataggatcaaatgacaccatggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccgacgttttccatcaattcattaaatg 8911791  T
Q  371 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
    |||||||  | ||||||| | | |||||||||||||| ||| |||||||||||||||    
T  8911790 ctcacatgcttatcaaattatctaaattttaattttagaaacaatttattctttctt 8911734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 274 - 427
Target Start/End: Original strand, 4776249 - 4776406
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||||||||||||||||| || ||||  ||||||||||||||  ||||| |||  ||||||||||| ||||||  ||||  ||||||||||||||||||     
T  4776249 gatatgatcaaatgacactaaagtgtcaaattaaatttgacactaaatcctaacaattaatccaacattaatccgacgttgctcatcaattcattaaatg 4776348  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
    |||||||  |||||||| ||| | |||||| ||||||| |||||||||||||||||||    
T  4776349 ctcacatgcttgatcaattgatcaaaatttcaattttagaaataatttattctttctt 4776406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 299 - 427
Target Start/End: Complemental strand, 19386944 - 19386816
Alignment:
Q  299 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaat 397  Q
    ||||||||||||||  ||||| ||| |||||||||| ||||||||| |||||||||||||| ||||||||| |||| ||  |||| ||||| | ||||||    
T  19386944 aattaaatttgacactaaatcctaaccattaatcca-ctttaatctgacgtctctcatcaaatcattaaatgctcatatgcttgaacaaataatccaaat 19386846  T
Q  398 tttaattttaaaaataatttattctttctt 427  Q
    |||||||||| ||||||||||||| |||||    
T  19386845 tttaattttagaaataatttattccttctt 19386816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 274 - 429
Target Start/End: Complemental strand, 39629568 - 39629409
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||||||||||||||||| |||||||  |||||||||||||| |||||  ||  ||||||| ||  |||||||||||| |||||||||||||||||| |     
T  39629568 gatatgatcaaatgacaccaaggtgtcaaattaaatttgacaccaaattctagccattaatacagttttaatctaacggctctcatcaattcattaagtg 39629469  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||||  ||||| || ||| |||  ||||| ||||| |||||||||||||||||||||    
T  39629468 ctcacatgcttgattaagtgacccatcttttatttttagaaataatttattctttcttct 39629409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 301 - 427
Target Start/End: Complemental strand, 20203323 - 20203197
Alignment:
Q  301 ttaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatattgatcaaatgagccaaatttt 400  Q
    |||||||||||| |||||||||| ||||||| |||||||||||  |||| | ||||||||||||| ||| |||||||  | | ||||| |   |||||||    
T  20203323 ttaaatttgacaccaaatcataaccattaattcaactttaatccgacgtttttcatcaattcattgaatgctcacatgcttaacaaattatataaatttt 20203224  T
Q  401 aattttaaaaataatttattctttctt 427  Q
    ||||||| ||| |||||||||||||||    
T  20203223 aattttagaaacaatttattctttctt 20203197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 308 - 431
Target Start/End: Complemental strand, 44929145 - 44929021
Alignment:
Q  308 tgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatatt-gatcaaatgagccaaattttaatttt 406  Q
    |||||| ||||| ||  |||||||  || ||||||||||||    ||||||||||||||||| |||||||||| |||||||||| |||  ||||||||||    
T  44929145 tgacattaaatcctagccattaatataattttaatctaacggtgttcatcaattcattaaatgctcacatatttgatcaaatgacccaccttttaatttt 44929046  T
Q  407 aaaaataatttattctttcttctct 431  Q
    | |||||||||||| ||||||||||    
T  44929045 agaaataatttattatttcttctct 44929021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 315 - 427
Target Start/End: Original strand, 38956050 - 38956162
Alignment:
Q  315 aaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaata 413  Q
    ||||| ||| |||||||||| |||||||| |||||||||| |||| ||||||||| |||||||  |||| ||||| | | |||||||||||||| |||||    
T  38956050 aaatcctaaccattaatcca-ctttaatccaacgtctctcgtcaagtcattaaatgctcacatgcttgaacaaattatctaaattttaattttagaaata 38956148  T
Q  414 atttattctttctt 427  Q
    || |||||||||||    
T  38956149 atctattctttctt 38956162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 429
Target Start/End: Original strand, 42848711 - 42848878
Alignment:
Q  266 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 362  Q
    ||||||| |||| ||||||||||||  |||||||  |||||||||||||| |||||| ||  |||||||     |||||||||||| ||| |||||||||    
T  42848711 atatatgggataggatcaaatgacaataaggtgtcaaattaaatttgacaccaaatcctagccattaatatggttttaatctaacgactcccatcaattc 42848810  T
Q  363 attaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    ||||| |  ||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  42848811 attaagtgttcacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttcttct 42848878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 429
Target Start/End: Complemental strand, 42849552 - 42849393
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||| |||||||||||||| |     
T  42849552 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctcccatcaattcattaagtg 42849453  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||||  ||||| || ||| |||  ||||| ||||| |||||||||||||||| ||||    
T  42849452 ctcacatgcttgattaagtgacccatcttttatttttagaaataatttattcttttttct 42849393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 420
Target Start/End: Original strand, 44926643 - 44926794
Alignment:
Q  274 gatatgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaa-t 369  Q
    ||||||||||||||||| ||||||||  |||||||||| |||||||||| ||  ||||||| ||  |||||| |||||  ||  |||||||||||||| |    
T  44926643 gatatgatcaaatgacatcaaggtgtcaaattaaattttacatcaaatcctacccattaatacagttttaatttaacggttccaatcaattcattaaagt 44926742  T
Q  370 tctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttatt 420  Q
     |||||||| |||||||| ||| |||  ||||||||||| ||||||||||||    
T  44926743 gctcacatacttgatcaactgatccatcttttaattttacaaataatttatt 44926794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 264 - 429
Target Start/End: Original strand, 13327736 - 13327905
Alignment:
Q  264 tcatatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaat 360  Q
    ||||||||| |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||| ||||||| |   |||||||||||| |||  || ||     
T  13327736 tcatatatgggataagatcaaatgacaccaaggtgttaaattaaatttgacaccaaatcctaaccattaatacggttttaatctaacggctccgataaac 13327835  T
Q  361 tcattaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    ||||| |   |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||| ||||||||    
T  13327836 tcattgagcgctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattatttcttct 13327905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 429
Target Start/End: Original strand, 39628805 - 39628898
Alignment:
Q  337 tttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||||||||| ||  |||||||||||||| | |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  39628805 tttaatctaacggcttccatcaattcattaagtgctcacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttcttct 39628898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 279 - 429
Target Start/End: Complemental strand, 13328860 - 13328706
Alignment:
Q  279 gatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcac 375  Q
    ||||||||||||| |||||||  |||||||||||||| |||||  ||  ||||||| |   |||||||||||| ||  ||| || | ||||| | |||||    
T  13328860 gatcaaatgacactaaggtgttaaattaaatttgacaccaaattctagccattaatacgggtttaatctaacgacttccataaacttattaagtgctcac 13328761  T
Q  376 ata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    ||  |||||||| ||| |||  ||||| |||||||||||||||||||||||||||    
T  13328760 atgcttgatcaagtgacccaccttttatttttaaaaataatttattctttcttct 13328706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 428
Target Start/End: Complemental strand, 4776987 - 4776905
Alignment:
Q  347 cgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttc 428  Q
    ||||| ||| ||||||||||||| |||| ||  ||||||||||||  ||||||||||||||| ||||||  ||||||||||||    
T  4776987 cgtctttcaacaattcattaaatgctcatatgcttgatcaaatgatgcaaattttaattttagaaataaaatattctttcttc 4776905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 431
Target Start/End: Original strand, 38273553 - 38273714
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| |||||||| |||| |||||||  ||| |||||||||| |||||| ||  |||||||  |  ||||||| |||| |||| ||||||||  ||| |     
T  38273553 gataggatcaaataacaccaaggtgtcaaataaaatttgacaccaaatcttatccattaatatagttttaatccaacggctctaatcaattctataagtg 38273652  T
Q  371 ctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 431  Q
    |||||||||| ||| ||||||||||  ||||||||||| ||| ||  |||||||||||||||    
T  38273653 ctcacatatttgattaaatgagccaccttttaattttagaaacaacctattctttcttctct 38273714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 429
Target Start/End: Complemental strand, 2477944 - 2477851
Alignment:
Q  337 tttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||||||||| ||| ||| || ||||||| | |||||||  |||||||| ||| |||  ||||||||||| ||||||||||  |||||||||    
T  2477944 tttaatctaacggctcccataaactcattaagtgctcacatgcttgatcaagtgacccaccttttaattttagaaataatttaaactttcttct 2477851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 274 - 427
Target Start/End: Complemental strand, 41710250 - 41710093
Alignment:
Q  274 gatatgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| |||||||||||| || |||||  |||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||     
T  41710250 gataagatcaaatgacatcatggtgtcaaattaaatttgacaccaaatcataatcattaattcaactttaatccaacgtctctcatcaattcattaaatg 41710151  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
    |||||||  |||||||||||| | |||||||||||||| ||| |||||||||||||||    
T  41710150 ctcacatgcttgatcaaatgatctaaattttaattttagaaacaatttattctttctt 41710093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 274 - 431
Target Start/End: Original strand, 51827564 - 51827725
Alignment:
Q  274 gatatgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    ||||||||||||||||| ||||||||  |||||||||||||| |||||||||| |||||||||||||||||||  |||||||||| |||||||||||||     
T  51827564 gatatgatcaaatgacatcaaggtgtcaaattaaatttgacaccaaatcataaccattaatccaactttaatccgacgtctctcaacaattcattaaatg 51827663  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 431  Q
    |||||||  ||||||||||||  ||||||||||||||| ||||||  |||||| ||||||||    
T  51827664 ctcacatgcttgatcaaatgatgcaaattttaattttagaaataaaatattctatcttctct 51827725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 303 - 425
Target Start/End: Original strand, 41709553 - 41709676
Alignment:
Q  303 aaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaatttta 401  Q
    |||||||||| |||||||||| |||||||||||||||||| | |||||||||||||||||||||||| |||||||  |||||||||| | | ||||||||    
T  41709553 aaatttgacaccaaatcataaccattaatccaactttaatatgacgtctctcatcaattcattaaatactcacatgtttgatcaaattatctaaatttta 41709652  T
Q  402 attttaaaaataatttattctttc 425  Q
    |||||| ||| |||||||||||||    
T  41709653 attttagaaacaatttattctttc 41709676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 279 - 431
Target Start/End: Original strand, 28907893 - 28908048
Alignment:
Q  279 gatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcac 375  Q
    ||||||||||||| |||||||  ||||||||||||||||||||| ||| |||||||||||||||||||  |||||||||| |||||||||||||  ||||    
T  28907893 gatcaaatgacactaaggtgtcaaattaaatttgacatcaaatcctaaccattaatccaactttaatccgacgtctctcaacaattcattaaatggtcac 28907992  T
Q  376 at-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 431  Q
    ||  ||||| ||||||  ||||||||||||||| ||||||  || ||||||||||||    
T  28907993 atgtttgattaaatgatgcaaattttaattttagaaataaaata-tctttcttctct 28908048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 299 - 427
Target Start/End: Complemental strand, 51829511 - 51829382
Alignment:
Q  299 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaat 397  Q
    |||||||||||| |||||||| | | |||||||||||| ||||||  ||||  |||||||||||||||||| |||||||  ||||| |||||| ||||||    
T  51829511 aattaaatttgaaatcaaatccttaccattaatccaacattaatccgacgttgctcatcaattcattaaatgctcacatgcttgatgaaatgatccaaat 51829412  T
Q  398 tttaattttaaaaataatttattctttctt 427  Q
    |||||||||| |||||||||||||||||||    
T  51829411 tttaattttagaaataatttattctttctt 51829382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 274 - 427
Target Start/End: Original strand, 53948662 - 53948818
Alignment:
Q  274 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| | |||||  |||||||||||||| |||||||||| ||||||| |||||||||||  ||||||||||||||||||||||||     
T  53948662 gataggatcaaatgacaccatggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattaaatg 53948761  T
Q  371 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
    |||| ||  | ||||||| | | || ||||||||||| ||| |||||||||||||||    
T  53948762 ctcaaatgcttatcaaattatctaatttttaattttagaaacaatttattctttctt 53948818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 274 - 427
Target Start/End: Complemental strand, 53949367 - 53949211
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||||||| ||||||| |||||||||||  |||||||||||||||||||| |||     
T  53949367 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattgaatg 53949268  T
Q  371 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
    |||||||  | | ||||| | | || ||||||||||| ||| |||||||||||||||    
T  53949267 ctcacatgcttaacaaattatctaatttttaattttagaaacaatttattctttctt 53949211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 274 - 427
Target Start/End: Complemental strand, 30834485 - 30834328
Alignment:
Q  274 gatatgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| |||||||||||| |||||| |  ||||||||||||||| ||||| ||| ||||||| |||| |||| |  | || |||||||||||||||||||     
T  30834485 gataggatcaaatgacatcaaggtatcaaattaaatttgacattaaatcctaaccattaattcaacattaacccgatgtttctcatcaattcattaaata 30834386  T
Q  371 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
    |||||||  |||||||||| | |||||||||||||||| |||||||||||||||||||    
T  30834385 ctcacatgcttgatcaaattatccaaattttaattttagaaataatttattctttctt 30834328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 268 - 427
Target Start/End: Complemental strand, 28908710 - 28908547
Alignment:
Q  268 atatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcat 364  Q
    ||||| |||| |||||||| |||| |||||||  ||||||||||||||  ||||  ||| |||||||||||| |||||   |||| ||||||||||| ||    
T  28908710 atatgggataggatcaaataacactaaggtgtcaaattaaatttgacacaaaattctaaccattaatccaacattaattcgacgtttctcatcaattgat 28908611  T
Q  365 taaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
    ||||| |||||||  |||||||||| | |||||||||||||||| |||||||||||||||||||    
T  28908610 taaatgctcacatgcttgatcaaattatccaaattttaattttagaaataatttattctttctt 28908547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 299 - 377
Target Start/End: Complemental strand, 43400794 - 43400716
Alignment:
Q  299 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat 377  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||||||    
T  43400794 aattaaatttgacaccaaatcataaccattaattcaactttaatccaacgtctctcatcaattcattaaatactcacat 43400716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 271 - 390
Target Start/End: Complemental strand, 53948629 - 53948506
Alignment:
Q  271 tgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaa 367  Q
    ||||||||||||||||||||| || |||   |||||||||||||| |||||| ||| |||||||||||||||||||| |||||||||  |||||||||||    
T  53948629 tgagatatgatcaaatgacaccaatgtgccaaattaaatttgacaccaaatcctaaccattaatccaactttaatctgacgtctctctacaattcattaa 53948530  T
Q  368 attctcacat-attgatcaaatga 390  Q
    || |||||||  ||||||||||||    
T  53948529 atgctcacatgcttgatcaaatga 53948506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 274 - 427
Target Start/End: Original strand, 38798254 - 38798410
Alignment:
Q  274 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| | |||||  |||||||||||||| ||||| |||| ||||||| |||||||||||  |||| || |||||||||||| |||     
T  38798254 gataggatcaaatgacactatggtgtcaaattaaatttgacaccaaattataaccattaattcaactttaatccgacgtttcacatcaattcattgaatg 38798353  T
Q  371 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
    ||| |||  | | ||||| | | |||||||||||||| ||| |||||||||||||||    
T  38798354 ctcgcatgcttaacaaattatctaaattttaattttagaaacaatttattctttctt 38798410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 302 - 429
Target Start/End: Original strand, 53949371 - 53949499
Alignment:
Q  302 taaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaatttt 400  Q
    ||||||||||| ||||||||| |||||||| |   |||||||||||| ||| |||||||||||||| | |||||||  |||||||| ||| |||  ||||    
T  53949371 taaatttgacaccaaatcatagtcattaatacggttttaatctaacggctcccatcaattcattaagtgctcacatgcttgatcaagtgatccatctttt 53949470  T
Q  401 aattttaaaaataatttattctttcttct 429  Q
    | ||||| |||||||||||||||| ||||    
T  53949471 atttttagaaataatttattcttttttct 53949499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 266 - 431
Target Start/End: Original strand, 11238510 - 11238677
Alignment:
Q  266 atatatgagatatgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 362  Q
    ||||||| |||| |||||||||||| ||||||||  |||||||||||||| |||||| ||| ||||||| ||| ||| ||||||||  || |||||||||    
T  11238510 atatatgggataggatcaaatgacatcaaggtgtcaaattaaatttgacaccaaatcctaaccattaatacaattttcatctaacggttcccatcaattc 11238609  T
Q  363 attaaattctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 431  Q
    ||||| | |||||||  |  | ||||||   |  ||||||||||| |||||||||||||||||| ||||    
T  11238610 attaagtgctcacatgct-tttaaatgacatactttttaattttagaaataatttattctttctcctct 11238677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 429
Target Start/End: Complemental strand, 47169211 - 47169052
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||| ||| || ||||||| |     
T  47169211 gataagatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctcccataaactcattaagtg 47169112  T
Q  371 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  47169111 ctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattctttcttct 47169052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 429
Target Start/End: Original strand, 47167889 - 47168048
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   ||||||||||||  |||| | || ||||||| |     
T  47167889 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggttctcgtaaactcattaagtg 47167988  T
Q  371 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  47167989 ctcacatgcttgatcaagtgatccaccttttatttttagaaataatttattctttcttct 47168048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 429
Target Start/End: Complemental strand, 53950131 - 53949972
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |    ||||||||||| ||  |||||||||||||| |     
T  53950131 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacgggcttaatctaacggcttccatcaattcattaagtg 53950032  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||| ||| ||||    
T  53950031 ctcacatgtttgatcaagtgatccatcttttatttttagaaataatttattttttattct 53949972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 431
Target Start/End: Original strand, 30833747 - 30833832
Alignment:
Q  346 acgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 431  Q
    |||||||||| ||||||||||||| |||||||  ||| ||||||||  ||||||||||||||| ||||||  || ||||||||||||    
T  30833747 acgtctctcaacaattcattaaatgctcacatgcttgttcaaatgatgcaaattttaattttagaaataaaata-tctttcttctct 30833832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 266 - 424
Target Start/End: Complemental strand, 24486007 - 24485855
Alignment:
Q  266 atatatgagatatgatcaaatgacacaaggtgtaattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcatt 365  Q
    |||||||||||| |||||||||||||||       ||||||||||||  |||||||| ||||||||  || ||||||||||||  |  ||||||||||||    
T  24486007 atatatgagataagatcaaatgacacaa-------ttaaatttgacactaaatcatagtcattaatataattttaatctaacggtttccatcaattcatt 24485915  T
Q  366 aaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattcttt 424  Q
    || |  | ||||  ||||||||||||   |  |||||||||||| | |||||||||||||    
T  24485914 aagtggttacatgtttgatcaaatgatttaccttttaattttaatagtaatttattcttt 24485855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 20200662 - 20200570
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattca 363  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||| ||||||||||    
T  20200662 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctcccatcaattca 20200570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 20202846 - 20202754
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattca 363  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||| ||||||||||    
T  20202846 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctcccatcaattca 20202754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 30833686 - 30833745
Alignment:
Q  277 atgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatcc 333  Q
    ||||||||||||||| |||||||  |||||||||||||| |||||| ||| |||||||||    
T  30833686 atgatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctaaccattaatcc 30833745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 6e-41; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 274 - 425
Target Start/End: Complemental strand, 26774724 - 26774573
Alignment:
Q  274 gatatgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    ||||||||||||||||| || |||||  ||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||     
T  26774724 gatatgatcaaatgacatcatggtgtcaaatcaaatttgacatcaaatcataaccattaatccaactttaatctgacgtctctcatcaattcattaaatg 26774625  T
Q  371 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttc 425  Q
    |||||   |||||||||| | | |||||||||||||| |||||||||||||||||    
T  26774624 ctcac---ttgatcaaattatctaaattttaattttagaaataatttattctttc 26774573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 266 - 431
Target Start/End: Complemental strand, 43334788 - 43334620
Alignment:
Q  266 atatatgagatatgatcaaatgacacaagg-tgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 362  Q
    ||||||| |||| ||||||||||||| | | |||  |||||||||||||| |||||||||| ||||||| ||||||||||||||||||| ||||||||||    
T  43334788 atatatgggataggatcaaatgacaccatgatgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatctaacgtctatcatcaattc 43334689  T
Q  363 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 431  Q
    ||||||| |||||||  |||||||||||| |||||||||||||||| ||| ||||| |||||||||||||    
T  43334688 attaaatgctcacatgcttgatcaaatgatccaaattttaattttagaaacaattt-ttctttcttctct 43334620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 299 - 427
Target Start/End: Original strand, 3474932 - 3475061
Alignment:
Q  299 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaat 397  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |||||||  |||||||||||| | ||||    
T  3474932 aattaaatttgacaccaaatcataaccattaattcaactttaatccaacgtctctcatcaattcattaaatgctcacatgcttgatcaaatgatctaaat 3475031  T
Q  398 tttaattttaaaaataatttattctttctt 427  Q
    |||||||||| ||| |||||||||||||||    
T  3475032 tttaattttagaaacaatttattctttctt 3475061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 266 - 431
Target Start/End: Complemental strand, 3163559 - 3163391
Alignment:
Q  266 atatatgagatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 362  Q
    ||||||| |||| ||||||||||||| | |||||  |||||||||||||| |||||||||| ||||||| ||||||||||| ||||||| ||||||||||    
T  3163559 atatatgggataggatcaaatgacaccatggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccaacgtctatcatcaattc 3163460  T
Q  363 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 431  Q
    ||||||| |||||||  ||||| |||||| |||||||||||||||| ||| ||||| |||||||||||||    
T  3163459 attaaatgctcacatgcttgattaaatgatccaaattttaattttagaaacaattt-ttctttcttctct 3163391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 274 - 427
Target Start/End: Original strand, 26773996 - 26774153
Alignment:
Q  274 gatatgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| |||||||||||| || |||||  ||||||||||||||  ||||||||| ||||||| ||||||||||| |||||||||| ||||||||||||||     
T  26773996 gataggatcaaatgacatcatggtgtcaaattaaatttgacactaaatcataaccattaattcaactttaatccaacgtctctcgtcaattcattaaatg 26774095  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
    |||||||  |||||||||||| | |||||||||||||| |||||||||||||||||||    
T  26774096 ctcacatgcttgatcaaatgatctaaattttaattttagaaataatttattctttctt 26774153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 299 - 431
Target Start/End: Complemental strand, 30470126 - 30469994
Alignment:
Q  299 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaat 397  Q
    |||||||||||||| |||||||||| ||||||| ||||||||||| ||||||| ||||||||||||||||| |||||||  |||||||||||| ||||||    
T  30470126 aattaaatttgacaccaaatcataaccattaattcaactttaatcaaacgtctatcatcaattcattaaatgctcacatgcttgatcaaatgatccaaat 30470027  T
Q  398 tttaattttaaaaataatttattctttcttctct 431  Q
    |||||||||| ||| ||||| |||||||||||||    
T  30470026 tttaattttagaaacaattt-ttctttcttctct 30469994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 274 - 425
Target Start/End: Complemental strand, 3475624 - 3475469
Alignment:
Q  274 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| | |||||  ||| |||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||     
T  3475624 gataggatcaaatgacaccatggtgtcaaatcaaatttgacaccaaatcataaccattaatccaactttaatctgacgtctctcatcaattcattaaata 3475525  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttc 425  Q
    |||||||  |||||||||| | | |||||||||||| | ||| |||||||||||||    
T  3475524 ctcacatgcttgatcaaattatctaaattttaatttaagaaacaatttattctttc 3475469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 299 - 427
Target Start/End: Original strand, 37422589 - 37422717
Alignment:
Q  299 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatattgatcaaatgagccaaatt 398  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||  |||||||||||||||||||||||| |||||||  | ||||||| | | || ||    
T  37422589 aattaaatttgacatcaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattaaatgctcacatgcttatcaaattatctaattt 37422688  T
Q  399 ttaattttaaaaataatttattctttctt 427  Q
    ||||||||| ||| |||||||||||||||    
T  37422689 ttaattttagaaacaatttattctttctt 37422717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 274 - 427
Target Start/End: Original strand, 3162871 - 3163027
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||| |||||||||| ||||||||| |||||||||||||| |||||||||     
T  3162871 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctaaccattaatcca-ctttaatctgacgtctctcatcaaatcattaaatg 3162969  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
    |||||||  |||| ||||| | |||||||||||||||| ||||||||||||| |||||    
T  3162970 ctcacatgcttgaacaaataatccaaattttaattttagaaataatttattccttctt 3163027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 274 - 427
Target Start/End: Original strand, 43334132 - 43334288
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| |||||||  |||||| |||||||||||||||||| |||||||||| ||||||||| |||||||||||||| |||||||||     
T  43334132 gataggatcaaatgacaccaaggtgtcaaattaagtttgacatcaaatcataaccattaatcca-ctttaatctgacgtctctcatcaaatcattaaatg 43334230  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
    |||||||   ||| ||||| | |||||||||||||||| ||||||||||||| |||||    
T  43334231 ctcacatgcctgaacaaataatccaaattttaattttagaaataatttattccttctt 43334288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 274 - 431
Target Start/End: Complemental strand, 46428172 - 46428012
Alignment:
Q  274 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| | |||||  |||||||||||||| ||||| |||| ||||||| ||||||||||| ||||||| |||||||||||||||||     
T  46428172 gataggatcaaatgacaccatggtgtcaaattaaatttgacaccaaattataaccattaattcaactttaatccaacgtctatcatcaattcattaaatg 46428073  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 431  Q
    |||||||  |||||||||||| | |||||||||||||| ||| ||||| |||||||||||||    
T  46428072 ctcacatgcttgatcaaatgatctaaattttaattttagaaacaattt-ttctttcttctct 46428012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 266 - 420
Target Start/End: Original strand, 30469506 - 30469663
Alignment:
Q  266 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 362  Q
    ||||||| |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||| |||||||||| ||||||| | |||||||||||||| ||    
T  30469506 atatatgggataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctaaccattaatcca-ctttaatttgacgtctctcatcaaatc 30469604  T
Q  363 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttatt 420  Q
    ||||||| |||||||  |||| ||||| | |||||||||||||||| ||||||||||||    
T  30469605 attaaatgctcacatgcttgaacaaataatccaaattttaattttagaaataatttatt 30469663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 274 - 427
Target Start/End: Original strand, 30659857 - 30660013
Alignment:
Q  274 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| | |||||  |||||||||||||| |||||||||| ||||||| |||||||||||  ||||||||||||||||||||||||     
T  30659857 gataggatcaaatgacaccatggtgtcaaattaaatttgacaccaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattaaatg 30659956  T
Q  371 ctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
    ||| |||  | ||||||| | | || ||||||||||| ||| |||||||||||||||    
T  30659957 ctcgcatgcttatcaaattatctaatttttaattttagaaacaatttattctttctt 30660013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 274 - 429
Target Start/End: Complemental strand, 8487862 - 8487703
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| ||  |||||||||||| |||||||||||||||||| |     
T  8487862 gataggatcaaatgacacgaaggtgtcaaattaaatttgacaccaaatcctagccattaatacagttttaatctaacggctctcatcaattcattaagtg 8487763  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  8487762 ctcacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttcttct 8487703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 299 - 429
Target Start/End: Complemental strand, 21866409 - 21866278
Alignment:
Q  299 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatatt-gatcaaatgagccaaat 397  Q
    ||||||| ||||||  ||||| ||| ||||||| ||  |||||||||| || ||||||||||||||||| | ||||||| || |||||||||| |||  |    
T  21866409 aattaaagttgacacaaaatcctaaccattaatacagttttaatctaatgtttctcatcaattcattaagtgctcacatgtttgatcaaatgacccacct 21866310  T
Q  398 tttaattttaaaaataatttattctttcttct 429  Q
    ||||||||||||||||||||||||||||||||    
T  21866309 tttaattttaaaaataatttattctttcttct 21866278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 299 - 427
Target Start/End: Complemental strand, 30660534 - 30660406
Alignment:
Q  299 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatattgatcaaatgagccaaatt 398  Q
    |||||||||||| | |||||||||| ||||||| |||||||||||  |||||||||||||||||||| ||| ||| |||  | | ||||| | | |||||    
T  30660534 aattaaatttgagaccaaatcataaccattaattcaactttaatccgacgtctctcatcaattcattgaatgctcccatgcttaacaaattatctaaatt 30660435  T
Q  399 ttaattttaaaaataatttattctttctt 427  Q
    ||||||||| ||| |||||||||||||||    
T  30660434 ttaattttagaaacaatttattctttctt 30660406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 266 - 429
Target Start/End: Original strand, 8487023 - 8487190
Alignment:
Q  266 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 362  Q
    ||||||| |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |    ||||||||||| |||||||||||||    
T  8487023 atatatgggataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacgggcttaatctaacggctctcatcaattc 8487122  T
Q  363 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    ||||| | |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||| ||||    
T  8487123 attaagtgctcacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttgttct 8487190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 266 - 429
Target Start/End: Original strand, 8512698 - 8512865
Alignment:
Q  266 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 362  Q
    ||||||| |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |    ||||||||||| |||||||||||||    
T  8512698 atatatgggataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacgggcttaatctaacggctctcatcaattc 8512797  T
Q  363 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    ||||| | |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||| ||||    
T  8512798 attaagtgctcacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttattct 8512865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 274 - 429
Target Start/End: Complemental strand, 8513517 - 8513358
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  || |||| ||  |||||||||||| ||| |||||||||||||| |     
T  8513517 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccaataatacagttttaatctaacggctcccatcaattcattaagtg 8513418  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  8513417 ctcacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttcttct 8513358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 303 - 417
Target Start/End: Original strand, 38816720 - 38816835
Alignment:
Q  303 aaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaatttta 401  Q
    |||||||||| ||||||||||  ||||||| ||||||||||| | ||||||||||||||||| |||| |||||||  |||||||||| | | ||||||||    
T  38816720 aaatttgacaccaaatcataactattaatctaactttaatctgatgtctctcatcaattcatcaaatgctcacatgcttgatcaaattatctaaatttta 38816819  T
Q  402 attttaaaaataattt 417  Q
    |||||| ||| |||||    
T  38816820 attttagaaacaattt 38816835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 266 - 429
Target Start/End: Complemental strand, 25245724 - 25245556
Alignment:
Q  266 atatatgagatatgatcaaa-tgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaatt 361  Q
    ||||||| |||||||||||| |||||| || ||||  ||||||||| |||| |||||| ||  ||||||| |   |||||||||| | ||||||| ||||    
T  25245724 atatatgggatatgatcaaaatgacaccaatgtgtcaaattaaattagacaccaaatcttagccattaatactgttttaatctaatgactctcattaatt 25245625  T
Q  362 cattaaattctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||| | ||||||| || |||||| ||| |||  ||||||||||| |||||||||||||||||||||    
T  25245624 cattaagtgctcacatgtttgatcaagtgatccaccttttaattttagaaataatttattctttcttct 25245556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 429
Target Start/End: Original strand, 31178642 - 31178800
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||||||||||||||||| ||| |||  |||||||||||||| |||||| ||  ||||||| ||  |||||||||||| ||| ||| || |||||||||     
T  31178642 gatatgatcaaatgacaccaagatgtcaaattaaatttgacaccaaatcctagccattaatacagttttaatctaacggctcccataaactcattaaata 31178741  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||| ||||||||||||||    
T  31178742 ctcacatgcttgatcaagtgacccaccttttatttttagaaataa-ttattctttcttct 31178800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 429
Target Start/End: Original strand, 38059849 - 38060008
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||| ||| || ||||||| |     
T  38059849 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctcccataaactcattaagtg 38059948  T
Q  371 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  38059949 ctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattctttcttct 38060008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 337 - 429
Target Start/End: Original strand, 28451192 - 28451285
Alignment:
Q  337 tttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||||||||| |||||||||||||||||| | |||||||| |||||||| ||| | |  ||||| ||||| |||||||| ||||||||||||    
T  28451192 tttaatctaacggctctcatcaattcattaagtactcacatacttgatcaagtgaccaatcttttatttttagaaataattcattctttcttct 28451285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 354 - 429
Target Start/End: Original strand, 21865651 - 21865727
Alignment:
Q  354 catcaattcattaaattctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||||||||||| | ||||||| || |||||| ||| |||  |||||||||||||||||||||||||||||||||    
T  21865651 catcaattcattaagtgctcacatttttgatcaagtgacccaccttttaattttaaaaataatttattctttcttct 21865727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 326 - 420
Target Start/End: Original strand, 46427550 - 46427644
Alignment:
Q  326 attaatccaactttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttatt 420  Q
    ||||||||| ||||||| | | |||||||||||| ||||||||| |||||||  |||| ||||| | |||||||||||||||| ||||||||||||    
T  46427550 attaatcca-ctttaatatgatgtctctcatcaaatcattaaatgctcacatgcttgaacaaataatccaaattttaattttagaaataatttatt 46427644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 279 - 431
Target Start/End: Original strand, 42519647 - 42519803
Alignment:
Q  279 gatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcac 375  Q
    ||||||||||||| |||||||  |||||||||||||| |||||||||| |||||||| ||||||||||  |||||||||||||||||||||||| ||||     
T  42519647 gatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcataaccattaatcaaactttaatccgacgtctctcatcaattcattaaatactcaa 42519746  T
Q  376 ata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 431  Q
    ||| ||||||||||||  ||||||||||||||| ||||||  |||||||||||||||    
T  42519747 atacttgatcaaatgatgcaaattttaattttagaaataaaatattctttcttctct 42519803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 274 - 427
Target Start/End: Complemental strand, 42520485 - 42520328
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| |||||||| |||| |||||||  |||||||||||||| |||||  ||| ||||||| |||| |||||| |||||||||||||||||||||||||     
T  42520485 gataggatcaaataacaccaaggtgtcaaattaaatttgacaccaaattctaaccattaattcaacattaatccaacgtctctcatcaattcattaaatg 42520386  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
    |||||||  ||||| |||||| ||||| |||||||||| ||||||| |||||||||||    
T  42520385 ctcacatgcttgatgaaatgatccaaactttaattttagaaataatgtattctttctt 42520328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 266 - 429
Target Start/End: Complemental strand, 42521753 - 42521586
Alignment:
Q  266 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 362  Q
    ||||||| |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||||||| || ||    
T  42521753 atatatgggataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctctcataaactc 42521654  T
Q  363 attaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    ||||| | |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  42521653 attaagtgctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattctttcttct 42521586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 266 - 429
Target Start/End: Complemental strand, 21148159 - 21147992
Alignment:
Q  266 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 362  Q
    |||||||||||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||| ||| || ||    
T  21148159 atatatgagataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctcccataaactc 21148060  T
Q  363 attaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    ||||| |  ||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  21148059 attaagtgttcacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttcttct 21147992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 274 - 429
Target Start/End: Complemental strand, 23206248 - 23206089
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||||||| || ||||||| |     
T  23206248 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctctcataaactcattaagtg 23206149  T
Q  371 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  23206148 ctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattctttcttct 23206089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 429
Target Start/End: Original strand, 42520619 - 42520778
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgtaat--taaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| ||||||| ||  ||||||| ||| |||||| ||  ||||||| |   |||||||||||| ||||||| || ||||||| |     
T  42520619 gataggatcaaatgacaccaaggtgtcatattaaattttacaccaaatcctagccattaatacggttttaatctaacgactctcataaactcattaagtg 42520718  T
Q  371 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  42520719 ctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattctttcttct 42520778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 429
Target Start/End: Original strand, 21145938 - 21146097
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||  ||||||| |   |||||||||||| ||| ||| || ||||||| |     
T  21145938 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctagccattaatacggttttaatctaacggctcccataaactcattaagtg 21146037  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||||  |||||||| ||| |||  ||||| ||||| ||||||||||  |||||||||    
T  21146038 ctcacatgcttgatcaagtgacccaccttttatttttagaaataatttaaactttcttct 21146097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 424
Target Start/End: Original strand, 31218780 - 31218851
Alignment:
Q  354 catcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattcttt 424  Q
    ||||||||||| |||| ||||||   |||||||||||| |||  ||||||||||| ||||||||||||||||    
T  31218780 catcaattcatcaaatgctcacaaggttgatcaaatgacccaccttttaattttagaaataatttattcttt 31218851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 429
Target Start/End: Complemental strand, 31219934 - 31219884
Alignment:
Q  379 ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||||||||| | |  |||||||||||||| ||||||||||||||||||    
T  31219934 ttgatcaaatgacctaccttttaattttaaaattaatttattctttcttct 31219884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 266 - 427
Target Start/End: Original strand, 21824551 - 21824715
Alignment:
Q  266 atatatgagatatgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 362  Q
    ||||||| ||||||||||||||||| ||||||||  |||||||||||||| |||||  ||| |||||||||| ||||||||| |||||||||||||| ||    
T  21824551 atatatgggatatgatcaaatgacatcaaggtgtcaaattaaatttgacaccaaattctaaccattaatcca-ctttaatctgacgtctctcatcaaatc 21824649  T
Q  363 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
    ||||||| |||||||  |||| ||||| | |||||||||||||||| ||||||||||||| |||||    
T  21824650 attaaatgctcacatgcttgaacaaataatccaaattttaattttagaaataatttattccttctt 21824715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 274 - 431
Target Start/End: Complemental strand, 21825201 - 21825041
Alignment:
Q  274 gatatgatcaaatgacacaa-ggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| | |||||  |||||||||||||| ||||| |||| ||||||| ||||||||||| ||||||| |||||||||||||||||     
T  21825201 gataggatcaaatgacaccatggtgtcaaattaaatttgacaccaaattataaccattaattcaactttaatccaacgtctatcatcaattcattaaatg 21825102  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 431  Q
    |||||||  |||||||||||| |||||||||||||||| ||| ||||| |||||||||||||    
T  21825101 ctcacatgcttgatcaaatgatccaaattttaattttagaaacaattt-ttctttcttctct 21825041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 274 - 429
Target Start/End: Original strand, 42882750 - 42882909
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||||||||||||||||| || ||||  |||||||||||||| |||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||     
T  42882750 gatatgatcaaatgacaccaatgtgttaaattaaatttgacaccaaatcataaccattaatccaattttaatctaacgtccctcatcaattcattaaatg 42882849  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
     || |||   ||||||||||| | ||| |||||||||| |||||||||||| ||||||||    
T  42882850 ttcccatgcctgatcaaatgatcaaaaatttaattttagaaataatttattttttcttct 42882909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 325 - 431
Target Start/End: Complemental strand, 42883468 - 42883361
Alignment:
Q  325 cattaatccaactttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctt 423  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||  ||||||  ||||||||||||  ||||||||||||||| |||||||||||||||    
T  42883468 cattaatccaactttaatctgacgtccctcatcaattcattaaatgttcacatgcttgatcaaatgattcaaattttaattttataaataatttattctt 42883369  T
Q  424 tcttctct 431  Q
    ||||||||    
T  42883368 tcttctct 42883361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 274 - 429
Target Start/End: Original strand, 45919513 - 45919672
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| |||||||  ||||||||||||||||||||| || |||||||| |   |||||||||||| |||||||||||||||||| |     
T  45919513 gataggatcaaatgacaccaaggtgtcaaattaaatttgacatcaaatcctagtcattaatacggttttaatctaacggctctcatcaattcattaagtg 45919612  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  45919613 ctcacatgcttgatcaagtgacccatcttttatttttagaaataatttattctttcttct 45919672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 429
Target Start/End: Complemental strand, 45920310 - 45920182
Alignment:
Q  302 taaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacat-attgatcaaatgagccaaatttt 400  Q
    ||||||||||| |||||  ||  ||||||| ||  |||||||||||| ||| |||||||||||||| | |||||||  |||||||| ||| |||  ||||    
T  45920310 taaatttgacaccaaattctagccattaatacagttttaatctaacggctcccatcaattcattaagtgctcacatgcttgatcaagtgacccatctttt 45920211  T
Q  401 aattttaaaaataatttattctttcttct 429  Q
    | ||||| |||||||||||||||||||||    
T  45920210 atttttagaaataatttattctttcttct 45920182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 429
Target Start/End: Complemental strand, 46619681 - 46619522
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||||||||||||||||| |||||||  |||||||||||||| |||||||||   |||||| |   |||||||||||| ||| ||| || ||||||| |     
T  46619681 gatatgatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcatagcaattaatacggttttaatctaacggctcccataaactcattaagtg 46619582  T
Q  371 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||| ||||||||    
T  46619581 ctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattttttcttct 46619522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 299 - 429
Target Start/End: Original strand, 46618380 - 46618511
Alignment:
Q  299 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatatt-gatcaaatgagccaaat 397  Q
    |||| |||||||||||||||| ||  ||||||| |   ||||||||||||  |||||| || ||||||| | ||||||| || |||||| ||| ||| ||    
T  46618380 aatttaatttgacatcaaatcctagccattaatacggttttaatctaacggttctcataaactcattaagtgctcacatgtttgatcaagtgatccacat 46618479  T
Q  398 tttaattttaaaaataatttattctttcttct 429  Q
    |||| ||||| |||||||||||||||||||||    
T  46618480 tttatttttagaaataatttattctttcttct 46618511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 299 - 429
Target Start/End: Original strand, 42058516 - 42058645
Alignment:
Q  299 aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacatattgatcaaatgagccaaatt 398  Q
    |||||||||||||| |||||| |||  ||||||  || ||||||||||||  |||||| ||||||||||||  ||||||  |  ||||||||   |  ||    
T  42058516 aattaaatttgacaccaaatcctaactattaatataattttaatctaacggttctcataaattcattaaatgttcacatgctt-tcaaatgatatacctt 42058614  T
Q  399 ttaattttaaaaataatttattctttcttct 429  Q
    |||||||||||||||||||||||||||||||    
T  42058615 ttaattttaaaaataatttattctttcttct 42058645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 429
Target Start/End: Original strand, 41695386 - 41695545
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| |||||||  |||||||||||||| |||||| |||| |||||| |   |||||||||||| ||  |||||||||||||| |     
T  41695386 gataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctaattattaatacggttttaatctaacggcttccatcaattcattaagtg 41695485  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
     ||||||  |||||||| ||  |||  ||||| ||||| |||||||||||||||| ||||    
T  41695486 ttcacatgtttgatcaagtggcccattttttatttttagaaataatttattcttttttct 41695545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 274 - 429
Target Start/End: Complemental strand, 41696174 - 41696015
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| |||||||||| || |||||||  |||||||||||||| |||||| ||   |||||| |   |||||||||||| ||| |||||||||||||| |     
T  41696174 gataggatcaaatgataccaaggtgtcaaattaaatttgacaccaaatcttagctattaatacggttttaatctaacggctcccatcaattcattaagtg 41696075  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||||  |||||||| ||| |||   |||| |||| ||||||||||||||||||||||    
T  41696074 ctcacatgcttgatcaagtgacccatcctttattttttaaaataatttattctttcttct 41696015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 274 - 431
Target Start/End: Complemental strand, 4158665 - 4158504
Alignment:
Q  274 gatatgatcaaatgacaca-aggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| |||||||||||||  ||||||  |||||||||||||| |||||| ||  ||||||| ||| ||||||||||||  |  ||| |||| ||||| |     
T  4158665 gataggatcaaatgacacttaggtgtcaaattaaatttgacaccaaatcctagccattaatacaattttaatctaacggtttccattaatttattaagtg 4158566  T
Q  371 ctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctttcttctct 431  Q
    ||||||| || ||||||||||   |  ||||||||||| ||||||||||||||||| |||||    
T  4158565 ctcacatgtttgatcaaatgacatatcttttaattttagaaataatttattctttcatctct 4158504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 378
Target Start/End: Original strand, 31915171 - 31915272
Alignment:
Q  279 gatcaaatgacacaaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcaca 376  Q
    ||||||||||||||||||||  |||||||||||||| |||||  || |||||||| |   ||||||||||||  |||||| |||| ||||| | ||||||    
T  31915171 gatcaaatgacacaaggtgtcaaattaaatttgacaccaaattctagtcattaatacggttttaatctaacggttctcattaatttattaagtgctcaca 31915270  T
Q  377 ta 378  Q
    ||    
T  31915271 ta 31915272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 429
Target Start/End: Original strand, 29212062 - 29212155
Alignment:
Q  337 tttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||||||||  ||| |||||||||||||| | |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||| ||||||||    
T  29212062 tttaatctaacagctcccatcaattcattaagtgctcacatgcttgatcaagtgacccatcttttatttttagaaataatttattatttcttct 29212155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 431
Target Start/End: Original strand, 4157900 - 4157934
Alignment:
Q  397 ttttaattttaaaaataatttattctttcttctct 431  Q
    ||||||||||| |||||||||||||||||||||||    
T  4157900 ttttaattttagaaataatttattctttcttctct 4157934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 431
Target Start/End: Complemental strand, 24377971 - 24377843
Alignment:
Q  303 aaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaatttta 401  Q
    |||||| |||||||||| || ||||||||  |  |||||||||||  |||| |||||||| |||| |  ||||||  ||||| |||||| |||  |||||    
T  24377971 aaatttaacatcaaatcttattcattaatatagttttaatctaacagctctaatcaattcgttaagtgatcacatgcttgat-aaatgaaccacctttta 24377873  T
Q  402 attttaaaaataatttattctttcttctct 431  Q
    |||||| ||| ||| |||||||||||||||    
T  24377872 attttagaaacaatctattctttcttctct 24377843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 52362743 - 52362802
Alignment:
Q  277 atgatcaaatgaca-caaggtgt--aattaaatttgacatcaaatcataatcattaatcc 333  Q
    |||||||||||||| ||||||||  ||||||||||||||||||||  ||| |||||||||    
T  52362743 atgatcaaatgacatcaaggtgttaaattaaatttgacatcaaattttaaccattaatcc 52362802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 308 - 431
Target Start/End: Complemental strand, 1798 - 1674
Alignment:
Q  308 tgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaatttt 406  Q
    ||||| |||||||||| |||||||| ||||||||||  |||||||||||||||||||||||| |||| ||| ||||||||||||  ||||||||||||||    
T  1798 tgacaccaaatcataaccattaatcaaactttaatccgacgtctctcatcaattcattaaatactcaaatacttgatcaaatgatgcaaattttaatttt 1699  T
Q  407 aaaaataatttattctttcttctct 431  Q
    | ||||||  |||||||||||||||    
T  1698 agaaataaaatattctttcttctct 1674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 266 - 427
Target Start/End: Original strand, 992 - 1154
Alignment:
Q  266 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 362  Q
    ||||||| |||| ||||||||||||| || ||||  |||||||||||||| |||||| ||| ||||||| |||| |||||| |||||||||||||||||     
T  992 atatatgggataggatcaaatgacaccaaagtgtcaaattaaatttgacaccaaatcctaaccattaattcaacattaatccaacgtctctcatcaattt 1091  T
Q  363 attaaattctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttctt 427  Q
    ||||||| |||||||  |  | |||||| ||||| |||||||||| |||||||||||||||||||    
T  1092 attaaatgctcacatgct--tgaaatgatccaaactttaattttagaaataatttattctttctt 1154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 266 - 429
Target Start/End: Original strand, 105504 - 105671
Alignment:
Q  266 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 362  Q
    ||||||| |||| ||||||||||||| |||||||  |||||||||||||| |||||| ||| ||||||| |   |||||||||||| ||| |||||||||    
T  105504 atatatgggataggatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcttaaccattaatacggttttaatctaacggctcccatcaattc 105603  T
Q  363 attaaattctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    ||||  |  ||||||  |||||||| |||  ||  ||||| ||||| |||||||||||||||||||||    
T  105604 attatgtgttcacatgcttgatcaagtgacgcatcttttatttttagaaataatttattctttcttct 105671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 274 - 429
Target Start/End: Complemental strand, 106343 - 106184
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||||||||||||||||| |||||||  |||||||||||||| |||||| ||| ||||||| |    ||||||||||| | | |||||||||||||| |     
T  106343 gatatgatcaaatgacaccaaggtgtcaaattaaatttgacaccaaatcctaaccattaatacgggcttaatctaacggcgcccatcaattcattaagtg 106244  T
Q  371 ctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||| ||||    
T  106243 ctcacatgcttgatcaagtgatccatcttttatttttagaaataatttattctttattct 106184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 266 - 429
Target Start/End: Original strand, 20724 - 20889
Alignment:
Q  266 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 362  Q
    |||||||||||| ||||||||||||| |||||||  ||||||||||||||  ||||| ||  ||||||| | | |||||||||| | |||  || |||||    
T  20724 atatatgagataggatcaaatgacaccaaggtgtcaaattaaatttgacactaaatcctagccattaatactattttaatctaatggctc--attaattc 20821  T
Q  363 attaaattctcacatatt-gatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    ||||| |  |||||| || |||||| ||| |||  ||||||||||| |||||||||||||||||||||    
T  20822 attaagtgatcacatgtttgatcaagtgatccaccttttaattttagaaataatttattctttcttct 20889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 274 - 429
Target Start/End: Original strand, 25616 - 25775
Alignment:
Q  274 gatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattcattaaatt 370  Q
    |||| ||||||||||||| || ||||  |||||||||||||| ||||||  |  ||||||| ||  ||||||||||||||||||||||||||||||| |     
T  25616 gataggatcaaatgacaccaatgtgtcaaattaaatttgacaccaaatcccagccattaatacagttttaatctaacgtctctcatcaattcattaagtg 25715  T
Q  371 ctcacat-attgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
     ||||||  |||||||| |||   |  ||||| ||||| |||||||||||||||||||||    
T  25716 ttcacatgcttgatcaagtgacaaatgttttatttttagaaataatttattctttcttct 25775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0853
Description:

Target: scaffold0853; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 429
Target Start/End: Original strand, 609 - 771
Alignment:
Q  266 atatatgagatatgatcaaatgacac-aaggtgt--aattaaatttgacatcaaatcataatcattaatccaactttaatctaacgtctctcatcaattc 362  Q
    ||||||| |||| ||||||||||||| || ||||  |||||||||||||| || ||| ||  ||||||| |   |||||||||||| ||| ||| || ||    
T  609 atatatgggataggatcaaatgacaccaatgtgtcaaattaaatttgacaccagatcctagccattaatacggttttaatctaacggctcccataaactc 708  T
Q  363 attaaattctcacatattgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    ||||| | ||||||    |||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  709 attaagtgctcaca----gatcaagtgatccaccttttatttttagaaataatttattctttcttct 771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0853; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 429
Target Start/End: Complemental strand, 2312 - 2219
Alignment:
Q  337 tttaatctaacgtctctcatcaattcattaaattctcacata-ttgatcaaatgagccaaattttaattttaaaaataatttattctttcttct 429  Q
    |||||||||||| ||  ||| || ||||||| | |||||||  |||||||| ||| |||  ||||| ||||| |||||||||||||||||||||    
T  2312 tttaatctaacggcttccataaactcattaagtgctcacatgcttgatcaagtgacccaccttttatttttagaaataatttattctttcttct 2219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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