View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4048_low_1 (Length: 748)
Name: NF4048_low_1
Description: NF4048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4048_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 104; Significance: 2e-51; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 316 - 464
Target Start/End: Complemental strand, 24395381 - 24395233
Alignment:
| Q |
316 |
cctagatagacaatttaattgaattatttcataataaaattgtgcttattttttctacctcctgagacttgtgatataagatcagatgaatgcaatttta |
415 |
Q |
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| T |
24395381 |
cctagatagacaatttaattgaattattttataataaaattgtgcttatttttgctacctcccgagacttgtgatataagatcagatgaatgcaatttta |
24395282 |
T |
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| Q |
416 |
acgtatcgtaactgaaatgnnnnnnncgttcacctctaatgatgagatc |
464 |
Q |
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| T |
24395281 |
acgtatcgtacctgaaatgtttttttccttcacctctaattatgagatc |
24395233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 24395681 - 24395607
Alignment:
| Q |
18 |
gcttgtactacgcaaattttaaatcccaaggcaatcactatcatataaaatacaacaatatatagaccatctttc |
92 |
Q |
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| T |
24395681 |
gcttgcactaggcaaattttaaatcccaaggcaatcactatcatataaaatacaacaatatatacaccatctttc |
24395607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 345 - 420
Target Start/End: Complemental strand, 24395830 - 24395755
Alignment:
| Q |
345 |
cataataaaattgtgcttattttttctacctcctgagacttgtgatataagatcagatgaatgcaattttaacgta |
420 |
Q |
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| T |
24395830 |
cataataaaattgtgcttatttttgttaccttctcaaacttgtgatataagatcagattaatgcgatttgaacgta |
24395755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 24395192 - 24395129
Alignment:
| Q |
29 |
gcaaattttaaatcccaaggcaatcactatcatataaaatacaacaatatatagaccatctttc |
92 |
Q |
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| T |
24395192 |
gcaaattttaaattccaagatagtcagtatcatataaaatacgacaatatatagaccatctttc |
24395129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 506 - 738
Target Start/End: Complemental strand, 3946570 - 3946341
Alignment:
| Q |
506 |
tctgagcagaattggtagtacattgggggtacccctttttgctgatgagtgcacctctaaccaatccaggatatcctatgctaggcttttggtcgagata |
605 |
Q |
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| T |
3946570 |
tctgagccgaattggtagtaccttgggaaatcctttgtttgctgatgaatgtacttcaaagcaatcgaggatttcttatgctaggcttttggttgaaatt |
3946471 |
T |
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| Q |
606 |
gatattgtaacaaggccattgctacacaagattatggttgaaaatcctgatgggaaatgttttgaacaacaaattgtgtatgattgggaaccatcttttt |
705 |
Q |
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| T |
3946470 |
gat---gtaacaagacctctcttatacaaagtgatggtagaaagtcctgatggaaaatgttttgaacaaaggattgtgtatgattgggagccatcctttt |
3946374 |
T |
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| Q |
706 |
gtaagaagtgtcaacaagttgggcatgtctgtg |
738 |
Q |
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| T |
3946373 |
gtaagaagtgtcagcaagttggtcatgtgtgtg |
3946341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 504 - 726
Target Start/End: Complemental strand, 33635049 - 33634830
Alignment:
| Q |
504 |
tctctgagcagaattggtagtacattgggggtacccctttttgctgatgagtgcacctctaaccaatccaggatatcctatgctaggcttttggtcgaga |
603 |
Q |
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| T |
33635049 |
tctctgagccgaattggtagtaccttgggaaatcctttgtttgctgatgaatgtacttcaaagcaatcgaggatttcttatgctaggcttttggttgaaa |
33634950 |
T |
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| Q |
604 |
tagatattgtaacaaggccattgctacacaagattatggttgaaaatcctgatgggaaatgttttgaacaacaaattgtgtatgattgggaaccatcttt |
703 |
Q |
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| T |
33634949 |
ttgat---gtaacaagacctctcttatacaaagtgatggtagaaagtcctgatggaaaatgttttgaacaaaggattgtgtatgattgggagccatcctt |
33634853 |
T |
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| Q |
704 |
ttgtaagaagtgtcaacaagttg |
726 |
Q |
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| T |
33634852 |
ttgtaagaagtgtcagcaagttg |
33634830 |
T |
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