View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4048_low_10 (Length: 396)
Name: NF4048_low_10
Description: NF4048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4048_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 40517501 - 40517893
Alignment:
| Q |
1 |
gataaagatgaccacaatctggaagtaacctcaacatgtcactttctttataatctcctaagcaaatagagcaactaattgaagttgaagaaccattctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40517501 |
gataaagatgaccacaatctggaagtaacctcaacatgtcactttctttataatctcctaagcaaatagagcaactaattgaagttgaagaaccattctt |
40517600 |
T |
|
| Q |
101 |
ctgaatttgagagtataacagtttcgggtatccttcaaaacttgtgtcggtgtgatgacgaagtccttgttccatgattgagtcttcatgacgatgtggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40517601 |
ctgaatttgagagtataacagtttcgggtatccttcaaaacttgtgtcggtgtgatgacgaagtccttgttccatgattgagtcttcatgacgatgtggt |
40517700 |
T |
|
| Q |
201 |
ggaaaaccagacaaaatattgagaatgtttcgacttcgtgaactacgaagtcgaacacatgcaataactattgaaagaaccaagaatacgagaccaaata |
300 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40517701 |
ggaaaaccggacaaaatattgagaatgtttcgacttcgtgaactacgaagtcgaacacatgcaataactattgaaagaaccaagaatacgagaccaaata |
40517800 |
T |
|
| Q |
301 |
caagtattaagatatatgtgaacccatttgcgtcaaaaccgttgttgttgttgtgtggaggttccgaggtgccgttgttgatgatgtccatct |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
40517801 |
caagtattaagatatatgtgaacccatttgcgtcaaaaccgttgttgttgttgtgtggaggttccgaggtgccgttgttgtcgatgttcatct |
40517893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University