View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4048_low_11 (Length: 299)
Name: NF4048_low_11
Description: NF4048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4048_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 23547933 - 23547829
Alignment:
| Q |
20 |
ccaggctacaaagatttttctctnnnnnnntaattgctaacatttgtctacaaaaaagtgtaaaagagtttcacacgctcgtgcttcgaatatcttaata |
119 |
Q |
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| T |
23547933 |
ccaggctacaaagatttttctctaaaaaaataattgctaacatttgtctacaaaaaagtgtaaaagagtttcacacgctcgtgcttcgaatatcttgata |
23547834 |
T |
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| Q |
120 |
taaag |
124 |
Q |
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||||| |
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| T |
23547833 |
taaag |
23547829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 23547816 - 23547774
Alignment:
| Q |
140 |
aatcgacaaatatattaagcaaggctagcgcaagatgcactta |
182 |
Q |
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| T |
23547816 |
aatcgataaatatattaagcaaggctagcgtaagatgcactta |
23547774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 283
Target Start/End: Complemental strand, 48157853 - 48157722
Alignment:
| Q |
152 |
tattaagcaaggctagcgcaagatgcacttaacccgtatagaagggaaaatagtacaacataaaagagccttataaacacggcacctctccacgaaatac |
251 |
Q |
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| T |
48157853 |
tattaagcaaggcaagcgcaagccgtactttacccgcataggagaaaaaagagtacaacataagagagccttaaaatgccggcatctctccaccaaagaa |
48157754 |
T |
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| Q |
252 |
aaactcaataaaagaaaacccctttgttccta |
283 |
Q |
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| T |
48157753 |
aaactcaataaaaaaaaacccctatgttccta |
48157722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 283
Target Start/End: Original strand, 31736787 - 31736918
Alignment:
| Q |
152 |
tattaagcaaggctagcgcaagatgcacttaacccgtatagaagggaaaatagtacaac--ataaaagagccttataaacacggcacctctccacgaaat |
249 |
Q |
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||||||||||||| ||||||||| |||||| ||||| |||| ||| |||| |||||||| |||| ||||||||| || ||||| |||||||| ||| |
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| T |
31736787 |
tattaagcaaggcaagcgcaagacgcactttacccgcataggaggaaaaagagtacaacatataagagagccttaaaatgccggcatctctccaccaaag |
31736886 |
T |
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| Q |
250 |
acaaactcaataaaagaaaacccctttgttccta |
283 |
Q |
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| T |
31736887 |
aaaaactcaataaa--aaaacccctatgttccta |
31736918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 50646981 - 50647022
Alignment:
| Q |
148 |
aatatattaagcaaggctagcgcaagatgcacttaacccgta |
189 |
Q |
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| T |
50646981 |
aatatattaagcaaggttagcgcaatatgtacttaacccgta |
50647022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 4295325 - 4295371
Alignment:
| Q |
140 |
aatcgacaaatat-attaagcaaggctagcgcaagatgcacttaacc |
185 |
Q |
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||||| ||||||| |||||||||||||||| |||||||||||||||| |
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| T |
4295325 |
aatcggcaaatattattaagcaaggctagcccaagatgcacttaacc |
4295371 |
T |
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