View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4048_low_13 (Length: 243)
Name: NF4048_low_13
Description: NF4048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4048_low_13 |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0038 (2 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 107 - 224
Target Start/End: Original strand, 54932 - 55049
Alignment:
| Q |
107 |
ttaattttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttccacctt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54932 |
ttaattttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttccacctt |
55031 |
T |
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| Q |
207 |
cggatgttcacatgtaac |
224 |
Q |
| |
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|||||||||||||||||| |
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| T |
55032 |
cggatgttcacatgtaac |
55049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 107 - 224
Target Start/End: Complemental strand, 28191875 - 28191758
Alignment:
| Q |
107 |
ttaattttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttccacctt |
206 |
Q |
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||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28191875 |
ttaattttatccttttataaggatcggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttccactct |
28191776 |
T |
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| Q |
207 |
cggatgttcacatgtaac |
224 |
Q |
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|||||||||| ||||||| |
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| T |
28191775 |
cggatgttcatatgtaac |
28191758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 110 - 219
Target Start/End: Complemental strand, 28525691 - 28525582
Alignment:
| Q |
110 |
attttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttccaccttcgg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | | |
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| T |
28525691 |
attttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttattggttccactaactg |
28525592 |
T |
|
| Q |
210 |
atgttcacat |
219 |
Q |
| |
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|||||||||| |
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| T |
28525591 |
atgttcacat |
28525582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 107 - 219
Target Start/End: Complemental strand, 28246839 - 28246727
Alignment:
| Q |
107 |
ttaattttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttccacctt |
206 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||| ||||||||||| |
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| T |
28246839 |
ttaattttatcttttcataaggattggtgaattgaatatcatccatgttattttgctctttgtaaaaatggattccaatttctgttattggttccacctc |
28246740 |
T |
|
| Q |
207 |
cggatgttcacat |
219 |
Q |
| |
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| T |
28246739 |
ctgatgttcacat |
28246727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 107 - 216
Target Start/End: Complemental strand, 28239849 - 28239740
Alignment:
| Q |
107 |
ttaattttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttccacctt |
206 |
Q |
| |
|
||||||||| | |||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28239849 |
ttaattttaacctttcttaaggattggtgaattgaatgtcatccatgttattttcgtgtttgaaaaaatggattccaatttctgttagtggttccacatt |
28239750 |
T |
|
| Q |
207 |
cggatgttca |
216 |
Q |
| |
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| ||||||| |
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| T |
28239749 |
tgaatgttca |
28239740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 107 - 200
Target Start/End: Complemental strand, 28329075 - 28328982
Alignment:
| Q |
107 |
ttaattttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttc |
200 |
Q |
| |
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|||| ||||||||||||||||||| |||||||| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28329075 |
ttaactttatcttttcataaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttc |
28328982 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 107 - 200
Target Start/End: Complemental strand, 28506711 - 28506618
Alignment:
| Q |
107 |
ttaattttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttc |
200 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28506711 |
ttaactttatcttttcataaggatcggtgaatttaatgtcctccatgttatttttctgtttgaaaaaatggattccaaattctgttagtggttc |
28506618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 28155006 - 28154930
Alignment:
| Q |
108 |
taattttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaa |
184 |
Q |
| |
|
||||||| |||||| | |||||| ||||||||||||||| ||||| || ||||||| || || | ||||||||||| |
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| T |
28155006 |
taattttctctttttacaaggatcggtgaattgaatatccgccatgctacttttctgctttaatacatggattccaa |
28154930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 107 - 219
Target Start/End: Complemental strand, 47001 - 46889
Alignment:
| Q |
107 |
ttaattttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttccacctt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||| ||||||||||| |
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| T |
47001 |
ttaattttatcttttcataaggattggtgaattgaatatcatccatgttattttgctctttgtaaaaatggattccaatttctgttattggttccacctc |
46902 |
T |
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| Q |
207 |
cggatgttcacat |
219 |
Q |
| |
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| ||||||||||| |
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|
| T |
46901 |
ctgatgttcacat |
46889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 107 - 216
Target Start/End: Complemental strand, 40011 - 39902
Alignment:
| Q |
107 |
ttaattttatcttttcataaggattggtgaattgaatatcatccatgttatttttctgtttgaaaaaatggattccaatttctgttagtggttccacctt |
206 |
Q |
| |
|
||||||||| | |||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40011 |
ttaattttaacctttcttaaggattggtgaattgaatgtcatccatgttattttcgtgtttgaaaaaatggattccaatttctgttagtggttccacatt |
39912 |
T |
|
| Q |
207 |
cggatgttca |
216 |
Q |
| |
|
| ||||||| |
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|
| T |
39911 |
tgaatgttca |
39902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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