View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4048_low_15 (Length: 238)
Name: NF4048_low_15
Description: NF4048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4048_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31642095 - 31641874
Alignment:
| Q |
1 |
tttgtattacatccttcatttgagtcttatacttgcatattcaacgttgttgttgcaggaattttagttctatgctctctcagaatgtcttccttgttta |
100 |
Q |
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| T |
31642095 |
tttgtattagatccttcatttgagtcttatacttgcatatacaacgttgttgttgcaggaattttagttctatgctctctcagaatgccttccttgttta |
31641996 |
T |
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| Q |
101 |
ttatcctccattttcttcaattcataatcctcttgaaactgattcagatacctttatatttaagcacaaatgagggttgtgagaatctgtttaattgtgg |
200 |
Q |
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| T |
31641995 |
ttatcctccattttcttcagttcataatccttttgaaactgattcagatacctttatgtttgagcacaaatgaaggttgtgagaatctgtttaattgtgg |
31641896 |
T |
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| Q |
201 |
aactataaaaccaattggtttt |
222 |
Q |
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| T |
31641895 |
aaatataaaacaaattggtttt |
31641874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 102 - 222
Target Start/End: Complemental strand, 31583388 - 31583268
Alignment:
| Q |
102 |
tatcctccattttcttcaattcataatcctcttgaaactgattcagatacctttatatttaagcacaaatgagggttgtgagaatctgtttaattgtgga |
201 |
Q |
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| T |
31583388 |
tatcctccattttcttcagttcataatccttttgaaactgattcagatacctttatgtttgagcacaaatgaaggttgtgagaatctgtttaattgtgga |
31583289 |
T |
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| Q |
202 |
actataaaaccaattggtttt |
222 |
Q |
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| T |
31583288 |
aatataaaacaaattggtttt |
31583268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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