View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4048_low_2 (Length: 619)
Name: NF4048_low_2
Description: NF4048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4048_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-153; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 20 - 366
Target Start/End: Original strand, 3682059 - 3682409
Alignment:
| Q |
20 |
ggcgttaacattgatattagataatttgagtttattcaatgctaatattagtaaacctattcttttattgacaaaatttaattaacctattctaaaaaat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3682059 |
ggcgttaacattgatattagataatttgagtttattcaatgctaatattagtaaacctattcttttattgacaaaatttaattaacctattctaaaaaat |
3682158 |
T |
|
| Q |
120 |
caaatacaatatatcactttttattattttatataaagatcaattctatagtgtccagttatgacaaagacaagtcttatatcatacataaactaatttt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3682159 |
caaatacaatatatcactttttattattttatataaaggtcaattctatagtgtccagttatgacaaagacaagtcttatatcatacataaactaatttt |
3682258 |
T |
|
| Q |
220 |
accattgaattaataaattttctcgttaaattaaaataatatgaagagccgctagttcctgataactnnnnnnnngt-aaaacataacaaacata--ata |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| |
|
|
| T |
3682259 |
accattgaattaataaattttctcgttaaattaaaataatatgaagagccgctagttcctgataactaaaaaaaagtaaaaacataacaaacataatata |
3682358 |
T |
|
| Q |
317 |
acttaaatcagttaactta-nnnnnnnacttcatgaaaatggtcatacctg |
366 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3682359 |
acttaaatcagttaacttattttttttacttcatgaaaatggtcatacctg |
3682409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 514 - 607
Target Start/End: Original strand, 3682557 - 3682650
Alignment:
| Q |
514 |
gaaagtaataaaaagaatatttccataaaagattnnnnnnnnnttgtgaaaaacttttttacaactattatttccccccacaggccacaggttc |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3682557 |
gaaagtaataaaaagaatatttccataaaagattaaaaaaaaattgtgaaaaacttttttacaactattatttccccccacaggccacaggttc |
3682650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 419
Target Start/End: Original strand, 3682433 - 3682462
Alignment:
| Q |
390 |
cacgattgcatcatgaaaatcaattatatg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
3682433 |
cacgattgcatcatgaaaatcaattatatg |
3682462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University