View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4048_low_3 (Length: 576)
Name: NF4048_low_3
Description: NF4048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4048_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 19 - 567
Target Start/End: Original strand, 40516900 - 40517442
Alignment:
| Q |
19 |
aagatatgatgatgttaaatagacgaagcatccatcatcctggatgcctttaaatcaataaaaccttttagtaataggcaagggaccatgtgcgtgagga |
118 |
Q |
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| T |
40516900 |
aagatatgatgatgttaaatagacgaagcatccatcatcgtggatgcctttaaatcaataaaaccttttagtaataggcaagggaccatgtgcgtgggga |
40516999 |
T |
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| Q |
119 |
ggtgttatgagaacacaaaaagaagagcaaacaagattaaataagacattcatgacccgaacttgaannnnnnnngg-tcgaatccgaacttgaaccttg |
217 |
Q |
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| T |
40517000 |
ggtgtt--gagaacacaaaaagaagagcaaacaaaattaaataagacattcatgacccgaacttgaatttttttttgatcgaatccaaacttgaaccttg |
40517097 |
T |
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| Q |
218 |
atcactatattatgccgccgccaaaagtttaatactccatcccggaacagattcaactctggcctaaccgcgctatatcaaacacatataccaccgtcac |
317 |
Q |
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| T |
40517098 |
attacgatattatgccgccgccaaaagtttaatactccaccccggaacagattaaactctggcctaaccgcgctatatcaaacacatataccaccgtcac |
40517197 |
T |
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| Q |
318 |
cttgtgatcggcagtttgatcatgagaaaaggtacaagatttgatttaagtaaccatctgaaaaattcatggaagatttatatatatacatacacagtgt |
417 |
Q |
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| T |
40517198 |
cttgtgatcggcagtttgatcatgagaaaaggtacaagatttgatttaagtaaccatctgaaaaattcatggaagatt----tatatacatacacagtgt |
40517293 |
T |
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| Q |
418 |
catgcccccatacagaagcactacacaatataattgttatttaaaatgataaacactgtccataaaagcatggctatatacacacaaaatgaaagattga |
517 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40517294 |
catg-ccccatacagaagcactacacaatataattgttatttaaaatgataaacactatccataaaaacatggctatatacacacaaaatgaaagattga |
40517392 |
T |
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| Q |
518 |
ttaatttacaacctcgtaatattgaaggctaggttgaagctagtgatgat |
567 |
Q |
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| T |
40517393 |
ttaatttacaacctcgtaatattgaaggctaggttgaagctagtgatgat |
40517442 |
T |
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