View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4048_low_8 (Length: 400)
Name: NF4048_low_8
Description: NF4048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4048_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 385
Target Start/End: Original strand, 31202222 - 31202569
Alignment:
| Q |
11 |
cataggctctagaatctgttctccgaagccctggcaaaggcgtaaaattgttcatgtttcggcttatcgtttcaccttcctcctcaattgttcatgcatg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
31202222 |
cataggctctagaatctgttctccgaagccctggcaaaggcgtaaaattgttcatgtttcggctcatcgtttcaccttcctcctcaattgttcatgcatg |
31202321 |
T |
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| Q |
111 |
catatattcttttcttatttagagggtgtaaatattgcttcacctgtgaacttaaggaataaatggctctgttcattttagttgtcagattagaatatat |
210 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31202322 |
catatattcttttcttatttagagggtgtaaata--------------------aggaataaatggctctgttcattttagttgtcagattagaatatat |
31202401 |
T |
|
| Q |
211 |
gcttaataatgtaatgttgtcacttgtcacttctatcaactattacttttgaagctcttgtgtcttctattctgattcaaagcctgatgcttactccatg |
310 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31202402 |
gcttaataatgtaatgttgt-------cacttctatcaactattacttttgaagctcttgtgtcttctattctgattcaaagcctgatgcttactccatg |
31202494 |
T |
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| Q |
311 |
ttgaaacaaaataaatcaagaaagaatcatgttcttcaagtgtgaatggaagctttatttattgaatgttatttt |
385 |
Q |
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| T |
31202495 |
ttgaaacaaaataaatcaagaaagaatcatgttcttcaagtgtgaatggaagctttatttattgaatgttatttt |
31202569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 31215504 - 31215690
Alignment:
| Q |
11 |
cataggctctagaatctgttctccgaagccctggcaaaggcgtaaaattgttcatgtttcggcttatcgtttcaccttcctcctcaattgttcatgcatg |
110 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||| |
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| T |
31215504 |
cataggctctagaatctgttctccggagccgcggcaaaggcgtaaaattgttcatgtttcggctcatcgtttcagcttcctcctcaattgatcatgcatg |
31215603 |
T |
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| Q |
111 |
catatattcttttcttatttagagggtgtaaatattgcttcacctgtgaacttaaggaataaatggctctgttcattttagttgtca |
197 |
Q |
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| T |
31215604 |
catatattcttttcttatttagagggtgtgaatattgcttcacttgtggacttaaggaataaatggctctgttcatttgagttgtca |
31215690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 226 - 374
Target Start/End: Original strand, 31215684 - 31215836
Alignment:
| Q |
226 |
gttgtcacttgtcacttctatcaactattacttttgaagctcttgtgtcttctattctgattcaaagcctgatgcttactccatgttgaaacaaaataaa |
325 |
Q |
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|||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| ||| |
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| T |
31215684 |
gttgtcacttatcacttctatcaactcttacttttgaagctcttgtgttttctattctgattcaaagcctgatgtttactgcatgttgaaacaaaagaaa |
31215783 |
T |
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| Q |
326 |
tcaagaaagaatcatg----ttcttcaagtgtgaatggaagctttatttattg |
374 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
31215784 |
tcaagaaagaatcatgttctttcttcaagtgtgaatggatgctttatttattg |
31215836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 13605994 - 13606136
Alignment:
| Q |
11 |
cataggctctagaatctgttctccgaagccctggcaaaggcgtaaaattgttcatgtttcggcttatcgtttcaccttcctcctcaattgttcatgcatg |
110 |
Q |
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|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
13605994 |
cataggctctagaatctgttctccgaagccctggctaaggcgtaaaattgttcatgtttcggctcatcgtttcaccttcctcctcaattgaacatgcatg |
13606093 |
T |
|
| Q |
111 |
catatattcttttcttatttagagggtgtaaatattgcttcac |
153 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13606094 |
catatattcttttcttatttagagggtgtaaatattgcttcac |
13606136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 274 - 386
Target Start/End: Original strand, 13606136 - 13606248
Alignment:
| Q |
274 |
cttctattctgattcaaagcctgatgcttactccatgttgaaacaaaataaatcaagaaagaatcatgttcttcaagtgtgaatggaagctttatttatt |
373 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13606136 |
cttctattctgattcaaagcctgctgcttactccatgttgaaacaaaataaatcaagaaagaatcatgttcttcaagtgtgaatggatgctttatttatt |
13606235 |
T |
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| Q |
374 |
gaatgttattttt |
386 |
Q |
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||| ||| ||||| |
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| T |
13606236 |
gaaagtttttttt |
13606248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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