View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4049_high_13 (Length: 343)

Name: NF4049_high_13
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4049_high_13
NF4049_high_13
[»] chr6 (21 HSPs)
chr6 (70-216)||(18235037-18235183)
chr6 (216-301)||(18235209-18235294)
chr6 (124-216)||(2399189-2399281)
chr6 (124-217)||(2045045-2045138)
chr6 (220-299)||(2045163-2045240)
chr6 (4-47)||(2399359-2399402)
chr6 (1-48)||(18234971-18235018)
chr6 (1-48)||(2044928-2044975)
chr6 (4-43)||(12698556-12698595)
chr6 (6-44)||(2660782-2660820)
chr6 (6-44)||(7021994-7022032)
chr6 (6-44)||(11450448-11450486)
chr6 (1-43)||(13405421-13405463)
chr6 (6-44)||(15469266-15469304)
chr6 (6-44)||(26468625-26468663)
chr6 (6-44)||(34023486-34023524)
chr6 (6-43)||(12996575-12996612)
chr6 (6-43)||(13405307-13405344)
chr6 (122-166)||(13405297-13405341)
chr6 (6-46)||(23258896-23258936)
chr6 (6-46)||(23259010-23259050)
[»] chr1 (26 HSPs)
chr1 (216-300)||(45807312-45807395)
chr1 (122-207)||(1243510-1243594)
chr1 (122-216)||(45807195-45807289)
chr1 (230-298)||(1243446-1243514)
chr1 (132-216)||(17879740-17879824)
chr1 (1-48)||(45807070-45807117)
chr1 (1-48)||(1243668-1243715)
chr1 (12-43)||(27324616-27324647)
chr1 (6-44)||(919653-919691)
chr1 (6-44)||(8086406-8086444)
chr1 (6-44)||(24790611-24790649)
chr1 (6-44)||(25299031-25299069)
chr1 (6-44)||(29981650-29981688)
chr1 (1-43)||(32540651-32540693)
chr1 (6-44)||(37125869-37125907)
chr1 (6-44)||(40567142-40567180)
chr1 (6-44)||(42372146-42372184)
chr1 (6-44)||(48708360-48708398)
chr1 (6-43)||(919540-919577)
chr1 (216-297)||(17879637-17879717)
chr1 (2-47)||(17879914-17879959)
chr1 (12-45)||(18113565-18113598)
chr1 (7-44)||(45837021-45837058)
chr1 (6-46)||(17285235-17285275)
chr1 (140-208)||(43532247-43532315)
chr1 (7-43)||(44317744-44317780)
[»] chr8 (22 HSPs)
chr8 (216-299)||(26149217-26149300)
chr8 (122-216)||(26149323-26149416)
chr8 (6-44)||(4231396-4231434)
chr8 (6-43)||(8996524-8996561)
chr8 (4-43)||(43117410-43117449)
chr8 (6-44)||(3886725-3886763)
chr8 (6-44)||(5590118-5590156)
chr8 (6-44)||(7012514-7012552)
chr8 (1-43)||(17033001-17033043)
chr8 (1-43)||(17563437-17563479)
chr8 (6-44)||(22658291-22658329)
chr8 (1-43)||(32018034-32018076)
chr8 (6-44)||(36060534-36060572)
chr8 (6-44)||(42556038-42556076)
chr8 (6-44)||(43117526-43117564)
chr8 (6-43)||(7413322-7413359)
chr8 (4-41)||(26149491-26149528)
chr8 (6-43)||(41837786-41837823)
chr8 (8-44)||(197268-197304)
chr8 (8-44)||(312105-312141)
chr8 (216-248)||(36257438-36257470)
chr8 (8-44)||(38567308-38567344)
[»] chr3 (17 HSPs)
chr3 (125-216)||(32994010-32994101)
chr3 (216-297)||(3650611-3650691)
chr3 (7-43)||(25807136-25807172)
chr3 (140-211)||(7249129-7249200)
chr3 (10-45)||(25894697-25894732)
chr3 (10-45)||(25911664-25911699)
chr3 (6-44)||(11232099-11232137)
chr3 (6-44)||(13594818-13594856)
chr3 (6-44)||(22729396-22729434)
chr3 (6-44)||(32270864-32270902)
chr3 (6-44)||(35083969-35084007)
chr3 (6-44)||(44254545-44254583)
chr3 (6-44)||(50527578-50527616)
chr3 (6-44)||(52202158-52202196)
chr3 (7-44)||(45045387-45045424)
chr3 (6-46)||(1092820-1092860)
chr3 (152-216)||(3650524-3650588)
[»] chr7 (22 HSPs)
chr7 (124-216)||(25303776-25303868)
chr7 (221-298)||(25303671-25303748)
chr7 (1-47)||(25303945-25303991)
chr7 (6-44)||(17167043-17167081)
chr7 (6-44)||(22723720-22723758)
chr7 (6-44)||(23469340-23469378)
chr7 (6-44)||(29075129-29075167)
chr7 (6-44)||(31065567-31065605)
chr7 (6-44)||(36675431-36675469)
chr7 (6-44)||(40055767-40055805)
chr7 (6-44)||(42241873-42241911)
chr7 (6-44)||(44142937-44142975)
chr7 (6-44)||(44467965-44468003)
chr7 (6-44)||(44724007-44724045)
chr7 (6-44)||(45350227-45350265)
chr7 (7-44)||(9624173-9624210)
chr7 (6-43)||(23469227-23469264)
chr7 (6-43)||(25174324-25174361)
chr7 (6-43)||(31931855-31931892)
chr7 (7-44)||(46027857-46027894)
chr7 (122-178)||(5908275-5908331)
chr7 (6-46)||(43859267-43859307)
[»] chr2 (24 HSPs)
chr2 (122-210)||(9467726-9467813)
chr2 (122-208)||(40897561-40897646)
chr2 (216-301)||(9467842-9467926)
chr2 (1-48)||(1538190-1538237)
chr2 (1-48)||(44788472-44788519)
chr2 (6-43)||(2077667-2077704)
chr2 (216-264)||(45043271-45043319)
chr2 (216-275)||(40897471-40897530)
chr2 (1-43)||(11482856-11482898)
chr2 (6-44)||(11764970-11765008)
chr2 (6-44)||(16194428-16194466)
chr2 (6-44)||(26860606-26860644)
chr2 (1-43)||(27640773-27640815)
chr2 (6-44)||(31392722-31392760)
chr2 (6-44)||(34983452-34983490)
chr2 (6-44)||(36436126-36436164)
chr2 (6-44)||(38763890-38763928)
chr2 (6-44)||(42016679-42016717)
chr2 (6-44)||(44545673-44545711)
chr2 (7-44)||(1114982-1115019)
chr2 (124-212)||(1538033-1538119)
chr2 (7-44)||(13615907-13615944)
chr2 (6-43)||(29141875-29141912)
chr2 (6-43)||(31643555-31643592)
[»] chr4 (26 HSPs)
chr4 (222-300)||(11975491-11975569)
chr4 (216-297)||(32151356-32151437)
chr4 (124-212)||(32151242-32151329)
chr4 (2-48)||(15632191-15632237)
chr4 (1-48)||(11975777-11975824)
chr4 (6-46)||(2654852-2654892)
chr4 (6-44)||(10096400-10096438)
chr4 (122-216)||(11975598-11975699)
chr4 (6-44)||(13233406-13233444)
chr4 (6-44)||(22647287-22647325)
chr4 (6-44)||(31581694-31581732)
chr4 (6-44)||(36584599-36584637)
chr4 (6-44)||(36954954-36954992)
chr4 (6-44)||(41832553-41832591)
chr4 (6-44)||(44134669-44134707)
chr4 (6-43)||(7776946-7776983)
chr4 (6-43)||(11650797-11650834)
chr4 (7-44)||(12700512-12700549)
chr4 (7-44)||(13613036-13613073)
chr4 (6-43)||(13857789-13857826)
chr4 (6-43)||(13869319-13869356)
chr4 (6-43)||(45670175-45670212)
chr4 (6-43)||(50767324-50767361)
chr4 (1-41)||(18735238-18735278)
chr4 (221-297)||(50376067-50376142)
chr4 (8-44)||(50767099-50767135)
[»] scaffold0028 (2 HSPs)
scaffold0028 (7-43)||(33723-33759)
scaffold0028 (140-207)||(33672-33739)
[»] scaffold0014 (1 HSPs)
scaffold0014 (6-44)||(65224-65262)
[»] chr5 (10 HSPs)
chr5 (6-44)||(3631435-3631473)
chr5 (1-43)||(25397288-25397330)
chr5 (6-44)||(26525173-26525211)
chr5 (216-294)||(26682879-26682956)
chr5 (1-43)||(26683145-26683187)
chr5 (1-43)||(30050149-30050191)
chr5 (6-44)||(32304596-32304634)
chr5 (6-43)||(15374517-15374554)
chr5 (6-42)||(25701366-25701402)
chr5 (1-41)||(26683033-26683073)
[»] scaffold0050 (1 HSPs)
scaffold0050 (6-43)||(19336-19373)


Alignment Details
Target: chr6 (Bit Score: 96; Significance: 5e-47; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 70 - 216
Target Start/End: Original strand, 18235037 - 18235183
Alignment:
Q  70 cattctaatctacgtaaaatagtgtagtgaccaacccagnnnnnnnnnnnnntcatagatcaattttgtaagattttaaacaatttttcaacagtttcag 169  Q
    ||||||||||||||||||| ||||||||| |||||||||             |||||||||||||||||||||||||||||||||||||||| |||||||    
T  18235037 cattctaatctacgtaaaacagtgtagtggccaacccagaaaaataaaaaaatcatagatcaattttgtaagattttaaacaatttttcaacggtttcag 18235136  T
Q  170 atttcggcagttccacaagtagtatacatgatttttgtcgtgtctat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  18235137 atttcggcagttccacaagtagtatacatgatttttgtcgtgtctat 18235183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 18235209 - 18235294
Alignment:
Q  216 tacaaaccttctaatttgtggagggtttcaaacctctcttacattgtctctcaactaaaacttatttcaattaaaatttgtactat 301  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18235209 tacaaaccttctaatttgtggggggtttcaaacctctcttacattgtctctcaactaaaacttatttcaattaaaatttgtactat 18235294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 2399281 - 2399189
Alignment:
Q  124 atagatcaattttgtaagattttaaacaatttttcaacagtttcagatttcggcagttccacaagtagtatacatgatttttgtcgtgtctat 216  Q
    |||| ||||||||||||||||||||||||||||||||  |||| |||||||||| ||||||||| |||||||||||||||||||||| |||||    
T  2399281 ataggtcaattttgtaagattttaaacaatttttcaattgttttagatttcggccgttccacaaatagtatacatgatttttgtcgtttctat 2399189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 124 - 217
Target Start/End: Original strand, 2045045 - 2045138
Alignment:
Q  124 atagatcaattttgtaagattttaaacaatttttcaacagtttcagatttcggcagttccacaagtagtatacatgatttttgtcgtgtctata 217  Q
    ||||||||||||||| |||||||||| ||||||||||| |||| |||||||||  ||||||||| || ||||||||||||||||||||||||||    
T  2045045 atagatcaattttgtgagattttaaagaatttttcaacggttttagatttcggtggttccacaaatattatacatgatttttgtcgtgtctata 2045138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 299
Target Start/End: Original strand, 2045163 - 2045240
Alignment:
Q  220 aaccttctaatttgtggagggtttcaaacctctcttacattgtctctcaactaaaacttatttcaattaaaatttgtact 299  Q
    ||||||||||||||||||||||||||||| || |||  ||| ||| | |||||||||||||||||||||| |||| ||||    
T  2045163 aaccttctaatttgtggagggtttcaaacatccctt--attatctttgaactaaaacttatttcaattaacatttatact 2045240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 2399402 - 2399359
Alignment:
Q  4 aacaattataggtctattttacgagattttaaacaattttacga 47  Q
    |||||||||||||||||| | |||||||||||||||||||||||    
T  2399402 aacaattataggtctattctgcgagattttaaacaattttacga 2399359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 18234971 - 18235018
Alignment:
Q  1 attaacaattataggtctattttacgagattttaaacaattttacgac 48  Q
    ||||| |||||||||| |||||| ||||||||||||||||||||||||    
T  18234971 attaataattataggtatattttgcgagattttaaacaattttacgac 18235018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2044928 - 2044975
Alignment:
Q  1 attaacaattataggtctattttacgagattttaaacaattttacgac 48  Q
    ||||||||||||| || |||| | ||||||||||||||||||||||||    
T  2044928 attaacaattatatgtatattatgcgagattttaaacaattttacgac 2044975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 12698556 - 12698595
Alignment:
Q  4 aacaattataggtctattttacgagattttaaacaatttt 43  Q
    |||||||||||||||||||| |||||||||| ||||||||    
T  12698556 aacaattataggtctattttgcgagattttatacaatttt 12698595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 2660820 - 2660782
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  2660820 caattataggtctattttgcgagattttatacaatttta 2660782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 7021994 - 7022032
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  7021994 caattataggtctattttgcgagattttatacaatttta 7022032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 11450486 - 11450448
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  11450486 caattattggtctattttacgagattttatacaatttta 11450448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 13405463 - 13405421
Alignment:
Q  1 attaacaattataggtctattttacgagattttaaacaatttt 43  Q
    |||||| |||||||||||||||| |||||||||| ||||||||    
T  13405463 attaacgattataggtctattttgcgagattttatacaatttt 13405421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 15469266 - 15469304
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  15469266 caattataggtctattttgcgagattttatacaatttta 15469304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 26468625 - 26468663
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  26468625 caattataggtctattttgcgagattttatacaatttta 26468663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 34023524 - 34023486
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    ||||||||| ||||||||||||||||||| |||||||||    
T  34023524 caattatagatctattttacgagattttatacaatttta 34023486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 12996575 - 12996612
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttt 43  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  12996575 caattataggtctattttgcgagactttaaacaatttt 12996612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 13405344 - 13405307
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttt 43  Q
    |||| ||||||||||||| |||||||||||||||||||    
T  13405344 caatcataggtctattttgcgagattttaaacaatttt 13405307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 166
Target Start/End: Complemental strand, 13405341 - 13405297
Alignment:
Q  122 tcatagatcaattttgtaagattttaaacaatttttcaacagttt 166  Q
    |||||| || ||||||  |||||||||||||||||||||||||||    
T  13405341 tcataggtctattttgcgagattttaaacaatttttcaacagttt 13405297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 23258936 - 23258896
Alignment:
Q  6 caattataggtctattttacgagattttaaacaattttacg 46  Q
    ||||||||||||||||||  ||||||||| |||||||||||    
T  23258936 caattataggtctattttgtgagattttatacaattttacg 23258896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 23259050 - 23259010
Alignment:
Q  6 caattataggtctattttacgagattttaaacaattttacg 46  Q
    ||||||||||||||||||  ||||||||| |||||||||||    
T  23259050 caattataggtctattttgtgagattttatacaattttacg 23259010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 216 - 300
Target Start/End: Original strand, 45807312 - 45807395
Alignment:
Q  216 tacaaaccttctaatttgtggagggtttcaaacctctcttacattgtctctcaactaaaacttatttcaattaaaatttgtacta 300  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||    
T  45807312 tacaaaccttctaatttgtgg-gggtttcaaacctctcttacattgtctctcaactaaaacttgtttcaattaacatttttacta 45807395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 122 - 207
Target Start/End: Complemental strand, 1243594 - 1243510
Alignment:
Q  122 tcatagatcaattttgtaagattttaaacaatttttcaacagtttcagatttcggcagttccacaagtagtatacatgatttttgt 207  Q
    |||||||||||||| || |||||||||||||||||||||| |||| | ||||||||||||| ||||||||||||||||||||||||    
T  1243594 tcatagatcaattt-gtgagattttaaacaatttttcaacggttttatatttcggcagttctacaagtagtatacatgatttttgt 1243510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 122 - 216
Target Start/End: Original strand, 45807195 - 45807289
Alignment:
Q  122 tcatagatcaattttgtaagattttaaacaatttttcaacagtttcagatttcggcagttccacaagtagtatacatgatttttgtcgtgtctat 216  Q
    ||||||||| |||||||||||||||||||||||||||||| |||| | |||||||| ||| ||| |||||||||  ||||||||||||| |||||    
T  45807195 tcatagatctattttgtaagattttaaacaatttttcaacggttttaaatttcggcggtttcacgagtagtatatgtgatttttgtcgtatctat 45807289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 230 - 298
Target Start/End: Complemental strand, 1243514 - 1243446
Alignment:
Q  230 tttgtggagggtttcaaacctctcttacattgtctctcaactaaaacttatttcaattaaaatttgtac 298  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||| || |||||    
T  1243514 tttgtggtgggtttcaaacctcccttacattgtctctcaactaaaacttgtttcaattaacatctgtac 1243446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 17879824 - 17879740
Alignment:
Q  132 attttgtaagattttaaacaatttttcaacagtttcagatttcggcagttccacaagtagtatacatgatttttgtcgtgtctat 216  Q
    |||||||||||||||||||| |||||||| ||||| | ||||| || ||||||||||| | ||||||||||||| || |||||||    
T  17879824 attttgtaagattttaaacattttttcaatagttttaaatttcagcggttccacaagtggcatacatgatttttttcatgtctat 17879740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 45807070 - 45807117
Alignment:
Q  1 attaacaattataggtctattttacgagattttaaacaattttacgac 48  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45807070 attaacaattataggtctattttgcgagattttaaacaattttacgac 45807117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 1243715 - 1243668
Alignment:
Q  1 attaacaattataggtctattttacgagattttaaacaattttacgac 48  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  1243715 attaacaattataggtctattttgcgagattttaaacaattgtacgac 1243668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 43
Target Start/End: Original strand, 27324616 - 27324647
Alignment:
Q  12 taggtctattttacgagattttaaacaatttt 43  Q
    ||||||||||||||||||||||||||||||||    
T  27324616 taggtctattttacgagattttaaacaatttt 27324647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 919691 - 919653
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  919691 caattataggtctattttgcgagattttatacaatttta 919653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 8086406 - 8086444
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  8086406 caattataggtctattttgcgagattttatacaatttta 8086444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 24790611 - 24790649
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  24790611 caattataggtctattttgcgagattttatacaatttta 24790649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 25299069 - 25299031
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  25299069 caattataggtctattttgcgagattttatacaatttta 25299031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 29981688 - 29981650
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  29981688 caattataggtctattttgcgagattttatacaatttta 29981650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 32540693 - 32540651
Alignment:
Q  1 attaacaattataggtctattttacgagattttaaacaatttt 43  Q
    |||||| | ||||||||||||||||||||||||| ||||||||    
T  32540693 attaacgactataggtctattttacgagattttatacaatttt 32540651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 37125869 - 37125907
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  37125869 caattataggtctattttgcgagattttatacaatttta 37125907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 40567142 - 40567180
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  40567142 caattataggtctattttgcgagattttatacaatttta 40567180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 42372146 - 42372184
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  42372146 caattataggtctattttgcgagattttatacaatttta 42372184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 48708398 - 48708360
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  48708398 caattataggtctattttgcgagattttatacaatttta 48708360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 919577 - 919540
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttt 43  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  919577 caattataggtctaatttacgagactttaaacaatttt 919540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 297
Target Start/End: Complemental strand, 17879717 - 17879637
Alignment:
Q  216 tacaaaccttctaatttgtggagggtttcaaacctctcttacattgtctctcaactaaaacttatttcaattaaaatttgta 297  Q
    ||||||||||||||||||| | | |||||||||||| |||| ||||| | |||||  ||| ||||| ||||||| |||||||    
T  17879717 tacaaaccttctaatttgtag-gagtttcaaacctcccttatattgtttgtcaaccgaaaattattccaattaacatttgta 17879637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 17879959 - 17879914
Alignment:
Q  2 ttaacaattataggtctattttacgagattttaaacaattttacga 47  Q
    |||| ||||||| || |||||| |||||||||||||||||||||||    
T  17879959 ttaataattatatgtttattttgcgagattttaaacaattttacga 17879914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 18113565 - 18113598
Alignment:
Q  12 taggtctattttacgagattttaaacaattttac 45  Q
    |||||||| |||||||||||||||||||||||||    
T  18113565 taggtctaatttacgagattttaaacaattttac 18113598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 45837021 - 45837058
Alignment:
Q  7 aattataggtctattttacgagattttaaacaatttta 44  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  45837021 aattataggtctattttgcgagattttatacaatttta 45837058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 17285275 - 17285235
Alignment:
Q  6 caattataggtctattttacgagattttaaacaattttacg 46  Q
    ||||||||||||||||||  ||||||||| |||||||||||    
T  17285275 caattataggtctattttgtgagattttatacaattttacg 17285235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 43532315 - 43532247
Alignment:
Q  140 agattttaaacaatttttcaacagtttcagatttcggcagttccacaagtagtatacatgatttttgtc 208  Q
    |||||||||| |||||||||||| ||| || ||| | |||||||| |||| | ||||||| ||||||||    
T  43532315 agattttaaataatttttcaacaattttagtttttgccagttccagaagtggcatacatggtttttgtc 43532247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 44317744 - 44317780
Alignment:
Q  7 aattataggtctattttacgagattttaaacaatttt 43  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  44317744 aattataggtctattttgcgagattttatacaatttt 44317780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 216 - 299
Target Start/End: Complemental strand, 26149300 - 26149217
Alignment:
Q  216 tacaaaccttctaatttgtggagggtttcaaacctctcttacattgtctctcaactaaaacttatttcaattaaaatttgtact 299  Q
    |||| |||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||| |||||||||| |||||||||    
T  26149300 tacacaccttctaatttgtggggggtttcaaacctcccttgcattgtctctcaactaaaacttgtttcaattaacatttgtact 26149217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 122 - 216
Target Start/End: Complemental strand, 26149416 - 26149323
Alignment:
Q  122 tcatagatcaattttgtaagattttaaacaatttttcaacagtttcagatttcggcagttccacaagtagtatacatgatttttgtcgtgtctat 216  Q
    ||||||||||||||||| ||| ||||||||||||| |||| |||| ||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  26149416 tcatagatcaattttgtgagactttaaacaatttt-caacggttttagatttcggcgattccgcaagtagtatacatgatttttgtcgtgtctat 26149323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 4231396 - 4231434
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  4231396 caattataggtctattttacgagattttatacaatttta 4231434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 8996524 - 8996561
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttt 43  Q
    |||||||||||||||||| |||||||||||||||||||    
T  8996524 caattataggtctattttgcgagattttaaacaatttt 8996561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 43117410 - 43117449
Alignment:
Q  4 aacaattataggtctattttacgagattttaaacaatttt 43  Q
    |||||||||||||||||||| |||||||||| ||||||||    
T  43117410 aacaattataggtctattttgcgagattttatacaatttt 43117449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 3886763 - 3886725
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  3886763 caattataggtctattttgcgagattttatacaatttta 3886725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 5590156 - 5590118
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  5590156 caattataggtctattttgcgagattttatacaatttta 5590118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 7012514 - 7012552
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  7012514 caattataggtctattttgcgagattttatacaatttta 7012552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 17033043 - 17033001
Alignment:
Q  1 attaacaattataggtctattttacgagattttaaacaatttt 43  Q
    ||||||||  |||||||||||||| ||||||||||||||||||    
T  17033043 attaacaaccataggtctattttatgagattttaaacaatttt 17033001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 17563479 - 17563437
Alignment:
Q  1 attaacaattataggtctattttacgagattttaaacaatttt 43  Q
    ||||||||  |||||||||||||| ||||||||||||||||||    
T  17563479 attaacaaccataggtctattttatgagattttaaacaatttt 17563437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 22658329 - 22658291
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  22658329 caattataggtctattttgcgagattttatacaatttta 22658291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 32018076 - 32018034
Alignment:
Q  1 attaacaattataggtctattttacgagattttaaacaatttt 43  Q
    |||||| ||||||||||||||||| ||||||||| ||||||||    
T  32018076 attaacgattataggtctattttaagagattttatacaatttt 32018034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 36060534 - 36060572
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  36060534 caattataggtctattttgcgagattttatacaatttta 36060572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 42556076 - 42556038
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  42556076 caattataggtctattttgcgagattttatacaatttta 42556038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 43117526 - 43117564
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  43117526 caattataggtctattttgcgagattttatacaatttta 43117564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 7413322 - 7413359
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttt 43  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  7413322 caattataggtctattttgcgagactttaaacaatttt 7413359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 26149528 - 26149491
Alignment:
Q  4 aacaattataggtctattttacgagattttaaacaatt 41  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  26149528 aacaattataggtttattttgcgagattttaaacaatt 26149491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 41837823 - 41837786
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttt 43  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  41837823 caattataggtctaatttacgagactttaaacaatttt 41837786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 197268 - 197304
Alignment:
Q  8 attataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||| |||||||||| |||||||||    
T  197268 attataggtctattttgcgagattttatacaatttta 197304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 312105 - 312141
Alignment:
Q  8 attataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||| |||||||||| |||||||||    
T  312105 attataggtctattttgcgagattttatacaatttta 312141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 36257470 - 36257438
Alignment:
Q  216 tacaaaccttctaatttgtggagggtttcaaac 248  Q
    ||||||||||||||||||||| |||||||||||    
T  36257470 tacaaaccttctaatttgtggggggtttcaaac 36257438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 38567308 - 38567344
Alignment:
Q  8 attataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||| |||||||||| |||||||||    
T  38567308 attataggtctattttgcgagattttatacaatttta 38567344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 125 - 216
Target Start/End: Complemental strand, 32994101 - 32994010
Alignment:
Q  125 tagatcaattttgtaagattttaaacaatttttcaacagtttcagatttcggcagttccacaagtagtatacatgatttttgtcgtgtctat 216  Q
    |||||||| ||||| |||||||||||||||||||||  |||  |||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  32994101 tagatcaactttgtgagattttaaacaatttttcaatggttctagatttcggcggttccacaagtagtatacatgatttttgtggtgtctat 32994010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 297
Target Start/End: Original strand, 3650611 - 3650691
Alignment:
Q  216 tacaaaccttctaatttgtggagggtttcaaacctctcttacattgtctctcaactaaaacttatttcaattaaaatttgta 297  Q
    ||||||||||||||||| ||| |||||||||||||| || | ||||| | |||||||||| || || ||||||| |||||||    
T  3650611 tacaaaccttctaatttctgg-gggtttcaaacctccctcatattgtttgtcaactaaaaattgttccaattaacatttgta 3650691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 25807136 - 25807172
Alignment:
Q  7 aattataggtctattttacgagattttaaacaatttt 43  Q
    |||||||||||||||||||||| ||||||||||||||    
T  25807136 aattataggtctattttacgagtttttaaacaatttt 25807172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 211
Target Start/End: Original strand, 7249129 - 7249200
Alignment:
Q  140 agattttaaacaatttttcaacagtttcagatttcggcagttccacaagtagtatacatgatttttgtcgtg 211  Q
    ||||||||||||||||||||||| ||| |  ||| ||||||| || |||||| |||| ||| ||||||||||    
T  7249129 agattttaaacaatttttcaacaattttaatttttggcagtttcaaaagtagcatacgtgagttttgtcgtg 7249200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 25894732 - 25894697
Alignment:
Q  10 tataggtctattttacgagattttaaacaattttac 45  Q
    |||||||||||||| |||||||||||||||||||||    
T  25894732 tataggtctattttgcgagattttaaacaattttac 25894697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 25911699 - 25911664
Alignment:
Q  10 tataggtctattttacgagattttaaacaattttac 45  Q
    |||||||||||||| |||||||||||||||||||||    
T  25911699 tataggtctattttgcgagattttaaacaattttac 25911664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 11232137 - 11232099
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  11232137 caattataggtctattttgcgagattttatacaatttta 11232099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 13594856 - 13594818
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  13594856 caattataggtctattttgcgagattttatacaatttta 13594818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 22729396 - 22729434
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  22729396 caattataggtctattttgcgagattttatacaatttta 22729434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 32270902 - 32270864
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  32270902 caattataggtctattttgcgagattttatacaatttta 32270864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 35083969 - 35084007
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  35083969 caattataggtctattttgcgagattttatacaatttta 35084007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 44254583 - 44254545
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  44254583 caattataggtctattttgcgagattttatacaatttta 44254545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 50527616 - 50527578
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  50527616 caattataggtctattttgcgagattttatacaatttta 50527578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 52202158 - 52202196
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    ||||||||| ||||||||||||||||||| |||||||||    
T  52202158 caattatagatctattttacgagattttatacaatttta 52202196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 45045387 - 45045424
Alignment:
Q  7 aattataggtctattttacgagattttaaacaatttta 44  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  45045387 aattataggtctattttgcgagattttatacaatttta 45045424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 1092860 - 1092820
Alignment:
Q  6 caattataggtctattttacgagattttaaacaattttacg 46  Q
    ||||||||| |||||||| |||||||||| |||||||||||    
T  1092860 caattatagatctattttgcgagattttatacaattttacg 1092820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 3650524 - 3650588
Alignment:
Q  152 atttttcaacagtttcagatttcggcagttccacaagtagtatacatgatttttgtcgtgtctat 216  Q
    ||||||||||||||| |||||||||| |||||| |||| || ||  ||||| ||||| |||||||    
T  3650524 atttttcaacagttttagatttcggcggttccaaaagtggtttatgtgattgttgtcatgtctat 3650588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 25303868 - 25303776
Alignment:
Q  124 atagatcaattttgtaagattttaaacaatttttcaacagtttcagatttcggcagttccacaagtagtatacatgatttttgtcgtgtctat 216  Q
    ||||||||||||||| |||||||| ||||||||||||| |||| |||||||  |  || ||||||||||||||||||||||||||||||||||    
T  25303868 atagatcaattttgtgagattttagacaatttttcaacggttttagatttcaacgatttcacaagtagtatacatgatttttgtcgtgtctat 25303776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 25303748 - 25303671
Alignment:
Q  221 accttctaatttgtggagggtttcaaacctctcttacattgtctctcaactaaaacttatttcaattaaaatttgtac 298  Q
    |||||||||||| | ||||||| ||||||||||||||||||||||| || ||||||||||||||||||| ||||||||    
T  25303748 accttctaatttatagagggttccaaacctctcttacattgtctcttaagtaaaacttatttcaattaacatttgtac 25303671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 25303991 - 25303945
Alignment:
Q  1 attaacaattataggtctattttacgagattttaaacaattttacga 47  Q
    ||||||||||||||||||||| |  ||||||||||||||||||||||    
T  25303991 attaacaattataggtctattatgtgagattttaaacaattttacga 25303945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 17167043 - 17167081
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  17167043 caattataggtctattttgcgagattttatacaatttta 17167081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 22723758 - 22723720
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  22723758 caattataggtctattttgcgagattttatacaatttta 22723720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 23469378 - 23469340
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  23469378 caattataggtctattttgcgagattttatacaatttta 23469340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 29075167 - 29075129
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  29075167 caattataggtctattttgcgagattttatacaatttta 29075129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 31065605 - 31065567
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  31065605 caattataggtctattttgcgagattttatacaatttta 31065567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 36675469 - 36675431
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  36675469 caattataggtctattttgcgagattttatacaatttta 36675431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 40055767 - 40055805
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  40055767 caattataggtctattttgcgagattttatacaatttta 40055805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 42241911 - 42241873
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    ||||||||| ||||||||||||||||||| |||||||||    
T  42241911 caattatagatctattttacgagattttatacaatttta 42241873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 44142937 - 44142975
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  44142937 caattataggtctattttgcgagattttatacaatttta 44142975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 44468003 - 44467965
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  44468003 caattataggtctattttgcgagattttatacaatttta 44467965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 44724045 - 44724007
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  44724045 caattataggtctattttgcgagattttatacaatttta 44724007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 45350227 - 45350265
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  45350227 caattataggtctattttgcgagattttatacaatttta 45350265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 9624173 - 9624210
Alignment:
Q  7 aattataggtctattttacgagattttaaacaatttta 44  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  9624173 aattataggtctattttccgagattttatacaatttta 9624210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 23469264 - 23469227
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttt 43  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  23469264 caattataggtctaatttgcgagattttaaacaatttt 23469227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 25174324 - 25174361
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttt 43  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  25174324 caattataggtctattttgcgagactttaaacaatttt 25174361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 31931892 - 31931855
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttt 43  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  31931892 caattatagatctaatttacgagattttaaacaatttt 31931855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 46027857 - 46027894
Alignment:
Q  7 aattataggtctattttacgagattttaaacaatttta 44  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  46027857 aattataggtctattttgcgagattttatacaatttta 46027894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 5908275 - 5908331
Alignment:
Q  122 tcatagatcaattttgtaagattttaaacaatttttcaacagtttcagatttcggca 178  Q
    |||||||||| ||||| ||||||||||||||||||  || ||||| || ||||||||    
T  5908275 tcatagatcatttttgcaagattttaaacaattttgtaatagttttagttttcggca 5908331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 43859267 - 43859307
Alignment:
Q  6 caattataggtctattttacgagattttaaacaattttacg 46  Q
    ||||||||||||||||||  ||||||||| |||||||||||    
T  43859267 caattataggtctattttgtgagattttatacaattttacg 43859307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 9467726 - 9467813
Alignment:
Q  122 tcatagatcaattttgtaagattttaaacaatttttcaacagtttcagatttcggcagttccacaagtagtatacatgatttttgtcgt 210  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| |||| |||||||| ||||||||||||| ||||    
T  9467726 tcatagatcaattttgtgagattttaaacaatttttcaacagttttaaatttcggcggttctacaagtag-atacatgatttttatcgt 9467813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 40897646 - 40897561
Alignment:
Q  122 tcatagatcaattttgtaagattttaaacaatttttcaacagtttcagatttcggcagttccacaagtagtatacatgatttttgtc 208  Q
    ||||||||| ||||||| |||||||||||||||||||||| |||| ||||||||||  ||||| |||||| ||||||||||||||||    
T  40897646 tcatagatctattttgtgagattttaaacaatttttcaacggttt-agatttcggcgattccataagtagcatacatgatttttgtc 40897561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 9467842 - 9467926
Alignment:
Q  216 tacaaaccttctaatttgtggagggtttcaaacctctcttacattgtctctcaactaaaacttatttcaattaaaatttgtactat 301  Q
    |||| ||| ||||||||| || |||||||||||||| ||||||  |||||||||||||||||| |||||||||| |||||||||||    
T  9467842 tacataccatctaatttgagg-gggtttcaaacctcccttacacggtctctcaactaaaacttgtttcaattaatatttgtactat 9467926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 1538237 - 1538190
Alignment:
Q  1 attaacaattataggtctattttacgagattttaaacaattttacgac 48  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||    
T  1538237 attaacaattataggtctattatgcgagattttaaacaattttacgac 1538190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 44788519 - 44788472
Alignment:
Q  1 attaacaattataggtctattttacgagattttaaacaattttacgac 48  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  44788519 attaacaattataggtctatttttcgagattttaaacaattttgcgac 44788472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 2077667 - 2077704
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttt 43  Q
    |||||||||||||||||||||||| |||||||||||||    
T  2077667 caattataggtctattttacgagactttaaacaatttt 2077704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 45043271 - 45043319
Alignment:
Q  216 tacaaaccttctaatttgtggagggtttcaaacctctcttacattgtct 264  Q
    |||||| |||||||||| ||| ||||||||||||||||||| |||||||    
T  45043271 tacaaatcttctaatttttggggggtttcaaacctctcttatattgtct 45043319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 40897530 - 40897471
Alignment:
Q  216 tacaaaccttctaatttgtggagggtttcaaacctctcttacattgtctctcaactaaaa 275  Q
    |||| |||||||||||||||| ||||||||||||||  ||| ||||| | ||||||||||    
T  40897530 tacataccttctaatttgtggggggtttcaaacctcctttatattgtatgtcaactaaaa 40897471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 11482898 - 11482856
Alignment:
Q  1 attaacaattataggtctattttacgagattttaaacaatttt 43  Q
    ||||| |||||||||| ||||||||||| ||||||||||||||    
T  11482898 attaaaaattataggtttattttacgagtttttaaacaatttt 11482856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 11764970 - 11765008
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  11764970 caattataggtctattttgcgagattttatacaatttta 11765008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 16194428 - 16194466
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  16194428 caattataggtctattttgcgagattttatacaatttta 16194466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 26860644 - 26860606
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  26860644 caattataggtctattttgcgagattttatacaatttta 26860606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 27640773 - 27640815
Alignment:
Q  1 attaacaattataggtctattttacgagattttaaacaatttt 43  Q
    ||||| ||| |||||||||||||||||| ||||||||||||||    
T  27640773 attaaaaatcataggtctattttacgagtttttaaacaatttt 27640815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 31392722 - 31392760
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  31392722 caattataggtctattttgcgagattttatacaatttta 31392760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 34983452 - 34983490
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  34983452 caattataggtctattttgcgagattttatacaatttta 34983490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 36436164 - 36436126
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  36436164 caattataggtctattttgcgagattttatacaatttta 36436126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 38763890 - 38763928
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  38763890 caattataggtctattttgcgagattttatacaatttta 38763928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 42016679 - 42016717
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  42016679 caattataggtctattttgcgagattttatacaatttta 42016717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 44545711 - 44545673
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  44545711 caattataggtctattttgcgagattttatacaatttta 44545673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 1115019 - 1114982
Alignment:
Q  7 aattataggtctattttacgagattttaaacaatttta 44  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  1115019 aattataggtctattttgcgagattttatacaatttta 1114982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 212
Target Start/End: Complemental strand, 1538119 - 1538033
Alignment:
Q  124 atagatcaattttgtaagattttaaacaatttttcaacagtttcagatttcggcagttccacaagtagtatacatgatttttgtcgtgt 212  Q
    |||||| |||||||  ||||||||||||  ||||||||  ||| ||||||||||  || |  || ||||||||||||||||||||||||    
T  1538119 atagataaattttg--agattttaaacagcttttcaacgattttagatttcggcgatttctgaaatagtatacatgatttttgtcgtgt 1538033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 13615944 - 13615907
Alignment:
Q  7 aattataggtctattttacgagattttaaacaatttta 44  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  13615944 aattataggtctattttgcgagattttatacaatttta 13615907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 29141912 - 29141875
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttt 43  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  29141912 caattataggtctattttgcgagactttaaacaatttt 29141875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 31643592 - 31643555
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttt 43  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  31643592 caattataggtctattttgcgagactttaaacaatttt 31643555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 222 - 300
Target Start/End: Complemental strand, 11975569 - 11975491
Alignment:
Q  222 ccttctaatttgtggagggtttcaaacctctcttacattgtctctcaactaaaacttatttcaattaaaatttgtacta 300  Q
    ||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||  |||||||||| |||| |||||    
T  11975569 ccttctaatttgtggggggtttcaaacctcctttacattgtctctcaactaaaactggtttcaattaacatttatacta 11975491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 216 - 297
Target Start/End: Original strand, 32151356 - 32151437
Alignment:
Q  216 tacaaaccttctaatttgtggagggtttcaaacctctcttacattgtctctcaactaaaacttatttcaattaaaatttgta 297  Q
    |||| |||||||||||||| | |||||||||||||| ||||| |||||||| ||||||||||| |||||||||| |||||||    
T  32151356 tacataccttctaatttgtagggggtttcaaacctcccttacgttgtctcttaactaaaacttgtttcaattaatatttgta 32151437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 212
Target Start/End: Original strand, 32151242 - 32151329
Alignment:
Q  124 atagatcaattttgtaagattttaaacaatttttcaacagtttcagatttcggcagttccacaagtagtatacatgatttttgtcgtgt 212  Q
    ||||||||||||||| |||||| ||||| ||||||||| |||| ||||||| || |||||   ||||||||||||||||||||| ||||    
T  32151242 atagatcaattttgtgagatttaaaacattttttcaacggttttagatttcagcggttcc-ggagtagtatacatgatttttgttgtgt 32151329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 15632191 - 15632237
Alignment:
Q  2 ttaacaattataggtctattttacgagattttaaacaattttacgac 48  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||    
T  15632191 ttaacaattgtaggtctattttacgagattttaaacaattttgcgac 15632237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 11975824 - 11975777
Alignment:
Q  1 attaacaattataggtctattttacgagattttaaacaattttacgac 48  Q
    ||||||||||||||||||||| | ||||||||||||||||||| ||||    
T  11975824 attaacaattataggtctattctgcgagattttaaacaatttttcgac 11975777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 2654892 - 2654852
Alignment:
Q  6 caattataggtctattttacgagattttaaacaattttacg 46  Q
    ||||||||||||||||||| ||||||||| |||||||||||    
T  2654892 caattataggtctattttatgagattttatacaattttacg 2654852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 10096438 - 10096400
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  10096438 caattataggtctattttgcgagattttatacaatttta 10096400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 216
Target Start/End: Complemental strand, 11975699 - 11975598
Alignment:
Q  122 tcatagatcaattttgtaagattttaaacaatttttcaacagtttcagatttc---ggcagttccacaagtagtata----catgatttttgtcgtgtct 214  Q
    ||||| ||||||| ||  |||||||||| ||||||||||  |||| |||||||   ||| |||||||||||||||||    ||||||||||||| |||||    
T  11975699 tcataaatcaattatgagagattttaaataatttttcaatggttttagatttcatcggcggttccacaagtagtatatatacatgatttttgtcatgtct 11975600  T
Q  215 at 216  Q
    ||    
T  11975599 at 11975598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 13233406 - 13233444
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  13233406 caattataggtctattttgcgagattttatacaatttta 13233444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 22647287 - 22647325
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  22647287 caattataggtctattttgcgagattttatacaatttta 22647325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 31581732 - 31581694
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  31581732 caattataggtctattttgcgagattttatacaatttta 31581694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 36584599 - 36584637
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  36584599 caattataggtctattttgcgagattttatacaatttta 36584637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 36954992 - 36954954
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  36954992 caattataggtctattttgcgagattttatacaatttta 36954954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 41832553 - 41832591
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  41832553 caattataggtctattttgcgagattttatacaatttta 41832591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 44134669 - 44134707
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  44134669 caattataggtctattttgcgagattttatacaatttta 44134707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 7776946 - 7776983
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttt 43  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  7776946 caattataggtctattttgcgagactttaaacaatttt 7776983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 11650834 - 11650797
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttt 43  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  11650834 caattataggtctaatttacgagactttaaacaatttt 11650797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 12700549 - 12700512
Alignment:
Q  7 aattataggtctattttacgagattttaaacaatttta 44  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  12700549 aattataggtctattttgcgagattttatacaatttta 12700512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 13613073 - 13613036
Alignment:
Q  7 aattataggtctattttacgagattttaaacaatttta 44  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  13613073 aattataggtctattttccgagattttatacaatttta 13613036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 13857789 - 13857826
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttt 43  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  13857789 caattataggtctattttgcgagattttaaacattttt 13857826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 13869319 - 13869356
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttt 43  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  13869319 caattataggtctattttgcgagattttaaacattttt 13869356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 45670175 - 45670212
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttt 43  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  45670175 caattataggtctaatttacgagactttaaacaatttt 45670212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 50767324 - 50767361
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttt 43  Q
    |||||||||||||||||||||||  |||||||||||||    
T  50767324 caattataggtctattttacgaggctttaaacaatttt 50767361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18735238 - 18735278
Alignment:
Q  1 attaacaattataggtctattttacgagattttaaacaatt 41  Q
    |||||| |||||||||||||||| |||||||||| ||||||    
T  18735238 attaacgattataggtctattttgcgagattttatacaatt 18735278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 50376142 - 50376067
Alignment:
Q  221 accttctaatttgtggagggtttcaaacctctcttacattgtctctcaactaaaacttatttcaattaaaatttgta 297  Q
    |||||||||||||||| | |||||||||||| |||| ||||| | |||||| ||| || || ||||||| |||||||    
T  50376142 accttctaatttgtgg-gagtttcaaacctcccttatattgtttgtcaactgaaaattgttccaattaacatttgta 50376067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 50767099 - 50767135
Alignment:
Q  8 attataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||| |||||||||| |||||||||    
T  50767099 attataggtctattttgcgagattttatacaatttta 50767135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 33759 - 33723
Alignment:
Q  7 aattataggtctattttacgagattttaaacaatttt 43  Q
    ||||||||||| |||||||||||||||||||||||||    
T  33759 aattataggtccattttacgagattttaaacaatttt 33723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 33739 - 33672
Alignment:
Q  140 agattttaaacaatttttcaacagtttcagatttcggcagttccacaagtagtatacatgatttttgt 207  Q
    |||||||||||||||||||||| |||| || ||||| |||||| | |||| | |||| ||||||||||    
T  33739 agattttaaacaatttttcaacggttttagttttcgccagttctaaaagtggcatacgtgatttttgt 33672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 65224 - 65262
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  65224 caattataggtctattttgcgagattttatacaatttta 65262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 3631435 - 3631473
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  3631435 caattataggtctattttgcgagattttatacaatttta 3631473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 25397330 - 25397288
Alignment:
Q  1 attaacaattataggtctattttacgagattttaaacaatttt 43  Q
    ||||| |||||||| ||||||||||||||||||||| ||||||    
T  25397330 attaataattatagatctattttacgagattttaaataatttt 25397288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 26525211 - 26525173
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  26525211 caattataggtctattttgcgagattttatacaatttta 26525173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 294
Target Start/End: Complemental strand, 26682956 - 26682879
Alignment:
Q  216 tacaaaccttctaatttgtggagggtttcaaacctctcttacattgtctctcaactaaaacttatttcaattaaaattt 294  Q
    |||| |||||||||||||||| ||||||||||||||  ||| ||||| | | |||||||| || |||||||||| ||||    
T  26682956 tacataccttctaatttgtgg-gggtttcaaacctcctttatattgtatgttaactaaaaattgtttcaattaacattt 26682879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 26683187 - 26683145
Alignment:
Q  1 attaacaattataggtctattttacgagattttaaacaatttt 43  Q
    |||||||||||||||| ||||||  ||||||||||||||||||    
T  26683187 attaacaattataggtttattttgtgagattttaaacaatttt 26683145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 30050191 - 30050149
Alignment:
Q  1 attaacaattataggtctattttacgagattttaaacaatttt 43  Q
    |||||| |||||||||||||||||||| |||||| ||||||||    
T  30050191 attaacgattataggtctattttacgatattttatacaatttt 30050149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 32304634 - 32304596
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttta 44  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  32304634 caattataggtctattttgcgagattttatacaatttta 32304596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 15374517 - 15374554
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttt 43  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  15374517 caattataggtctaatttacgagactttaaacaatttt 15374554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 25701402 - 25701366
Alignment:
Q  6 caattataggtctattttacgagattttaaacaattt 42  Q
    |||||||||||||||||| |||||||||| |||||||    
T  25701402 caattataggtctattttgcgagattttatacaattt 25701366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 26683073 - 26683033
Alignment:
Q  1 attaacaattataggtctattttacgagattttaaacaatt 41  Q
    ||||| |||||||||||||||||  ||||||||||||||||    
T  26683073 attaaaaattataggtctattttgtgagattttaaacaatt 26683033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 19336 - 19373
Alignment:
Q  6 caattataggtctattttacgagattttaaacaatttt 43  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  19336 caattataggtctaatttacgagactttaaacaatttt 19373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University