View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4049_high_26 (Length: 250)
Name: NF4049_high_26
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4049_high_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 36995727 - 36995495
Alignment:
| Q |
1 |
caagcaaaaggttccgcagcgtttttcttattcacgatgagttgatgatcacagctaaacttttccctcgagtggttgttagccacctatcattaactaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36995727 |
caagcaaaaggttccgcagcgtttttcttattcacgatgagttgatgatcacagctaaacttttccctcgagtggttgttagccacctatcattaactaa |
36995628 |
T |
|
| Q |
101 |
ttagtgagtatattacccgtcgttaaatcattcaatgctaaggctaagtgnnnnnnncctttcaaaagaaggtcatatttttacattacactgtgttaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36995627 |
ttagtgagtatattacccgtcgttaaatcattcaatgctaaggctaagtgtttttttcctttcaaaagaaggtcatatttttacattacactgtgttaaa |
36995528 |
T |
|
| Q |
201 |
aataaaatttagaatgaattttacatttagagt |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
36995527 |
aataaaatttagaatgaattttacatttagagt |
36995495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University