View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4049_high_34 (Length: 241)
Name: NF4049_high_34
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4049_high_34 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 2700991 - 2701203
Alignment:
| Q |
18 |
ctgccacttatcaccttctccttccattgatagtttcaagaaagatagaggcagagttttgttgtttgctacttcttagtttaccaagactatggacaat |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2700991 |
ctgccacttatcaccttcaccttccattgatagtttcaagaaagatagaggtagagttttgttgtttgctacttcttagtttaccaagactatggacaat |
2701090 |
T |
|
| Q |
118 |
gcttatctcttattcagaaataataataataatctttagtgcacttcgtttttctttttatagattgactcttttgatgagataagttagtttatgttgg |
217 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2701091 |
gtttatctcttattcagaaataataataataatctttagtgcacttcgtttttctttttatagattggctcttttgatgagataagttagtttatgttgg |
2701190 |
T |
|
| Q |
218 |
atagatataagta |
230 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
2701191 |
ataggtataagta |
2701203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 10843552 - 10843596
Alignment:
| Q |
18 |
ctgccacttatcaccttctccttccattgatagtttcaagaaaga |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
10843552 |
ctgccacttatcaccttctccttccattgatattttcaaggaaga |
10843596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University