View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4049_high_41 (Length: 237)
Name: NF4049_high_41
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4049_high_41 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 18235333 - 18235556
Alignment:
| Q |
1 |
ttttctgactccgccacttatcaactctatcaaaaacttaaa-ataagggtaataagtaaatctgatatcatgcatccataaagtatggtcagatgcaca |
99 |
Q |
| |
|
|||||| ||||||||||||||||| |||| |||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18235333 |
ttttctaactccgccacttatcaaatctaacaaaaacttaaagataaaggtaataagtaaatctaatatcatgcatccataaagtatggtcagatgtaca |
18235432 |
T |
|
| Q |
100 |
ttagggctatgccttgaagcataaaataccaataaaactaaaactacttaaaataatgttgtcagattaagtccctgccatcatttcttgacccttgtac |
199 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18235433 |
ttagtgctatgccttgaaacataaaataccaataaaactaaaactacttaaaataatgttgtcagattaagtccctggcatcatttcttgacccttgtac |
18235532 |
T |
|
| Q |
200 |
ttctcacaatctatcgtggaaagt |
223 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
18235533 |
ttctcacaatctatcgtggaaagt |
18235556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University