View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4049_high_43 (Length: 236)
Name: NF4049_high_43
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4049_high_43 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 5451174 - 5451394
Alignment:
| Q |
1 |
tccttgtacctaatgtcttaatgnnnnnnngcggagatgaatgttcctcttgtggtaccgaatcattaatccctcattgttccatgctatctctttgatt |
100 |
Q |
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| T |
5451174 |
tccttgtacctaatgtcttaatgtttttttgcggagataaatgttcctcttgtggtaccgaatcattaatccctcattgttccatgctatctctttgatt |
5451273 |
T |
|
| Q |
101 |
cccggacaaatcagtgagtaaggtaccaatttctttggagatgttgcaactccattaaccaatcaatgtatttgttactccagagatcaaatgttatacg |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5451274 |
cccggacaaatcagtgagtaagttaccaatttctttggagatgttgcaactccattaaccaa-caatgtatttgttactccagagatcaaatgttatacg |
5451372 |
T |
|
| Q |
201 |
agaccacaatcatgtaatttat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
5451373 |
agaccacaatcatgtaatttat |
5451394 |
T |
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