View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4049_high_5 (Length: 531)

Name: NF4049_high_5
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4049_high_5
NF4049_high_5
[»] chr8 (4 HSPs)
chr8 (1-517)||(9378590-9379124)
chr8 (430-505)||(24692379-24692454)
chr8 (53-122)||(8185709-8185779)
chr8 (443-488)||(37519798-37519843)
[»] chr3 (1 HSPs)
chr3 (414-511)||(42087487-42087584)
[»] chr5 (2 HSPs)
chr5 (443-489)||(16763009-16763055)
chr5 (453-514)||(17181898-17181959)
[»] chr7 (2 HSPs)
chr7 (464-517)||(42401435-42401488)
chr7 (453-517)||(2342772-2342836)
[»] chr4 (1 HSPs)
chr4 (436-488)||(44593604-44593656)


Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Original strand, 9378590 - 9379124
Alignment:
Q  1 aaggaaaaataggtaatattcacaatgcacaggtggaagaaaattgtgtagcaggaccaataagttttggatataaagctagcaattgatgagtttaatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9378590 aaggaaaaataggtaatattcacaatgcacaggtggaagaaaattgtgtagcaggaccaataagttttggatataaagctagcaattgatgagtttaatc 9378689  T
Q  101 ttcccctcatgataagaactcaaataacttaaagccaatatatatagatacatgcatatcatcacaaggcaaagacac------------------aaac 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  ||||    
T  9378690 ttcccctcatgataagaactcaaataacttaaagccaatatatatagatacatgcatatcatcacaaggcaaagacacaaacacaaacacaaacacaaac 9378789  T
Q  183 acaaacacactctctacctcaaaaaacattcctctccttcacatgatgtttgaattagaaaacatggaatatagccaatatagtagttattcagcagaag 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9378790 acaaacacactctctacctcaaaaaacattcctctccttcacatgatgtttgaattagaaaacatggaatatagccaatatagtagttattcagcagaag 9378889  T
Q  283 caggagaagaagaaacatacacaactagttgcatatcttccatgagaaagaagaaaaacaagaatacaaagaggtttagtgatgaacaaatcaaatcatt 382  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9378890 caggagaagaagaaacatacacaactagtagcatatcttccatgagaaagaagaaaaacaagaatacaaagaggtttactgatgaacaaatcaaatcatt 9378989  T
Q  383 ggaaactatgtttgaggctgagacaagacttgaaccaagaaagaagttgcagttagctagagagcttggattgcagccaagacaagttgctatatggttt 482  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9378990 ggaaactatgtttgaaactgagacaagacttgaaccaagaaagaagttgcagttagctagagagcttggattgcagccaagacaagttgctatatggttt 9379089  T
Q  483 caaaacaaaagagctagatggaaatcaaagcaact 517  Q
    |||||||||||||||||||||||||||||||||||    
T  9379090 caaaacaaaagagctagatggaaatcaaagcaact 9379124  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 430 - 505
Target Start/End: Complemental strand, 24692454 - 24692379
Alignment:
Q  430 tgcagttagctagagagcttggattgcagccaagacaagttgctatatggtttcaaaacaaaagagctagatggaa 505  Q
    ||||| |||| ||||  ||||||||||||||||||||| ||||||||||||||||||||| ||| ||||| |||||    
T  24692454 tgcagctagcaagagctcttggattgcagccaagacaaattgctatatggtttcaaaacagaagggctaggtggaa 24692379  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 8185709 - 8185779
Alignment:
Q  53 aggaccaataagttttggatataaagctagcaattga-tgagtttaatcttcccctcatgataagaactca 122  Q
    ||||||||| |||||||||||||||||||||||||||  | ||| |||||   ||||||||||||||||||    
T  8185709 aggaccaatgagttttggatataaagctagcaattgagggggttaaatctgatcctcatgataagaactca 8185779  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 488
Target Start/End: Original strand, 37519798 - 37519843
Alignment:
Q  443 agagcttggattgcagccaagacaagttgctatatggtttcaaaac 488  Q
    ||||||||| ||||| ||||||||||||||| | ||||||||||||    
T  37519798 agagcttggtttgcaaccaagacaagttgctgtttggtttcaaaac 37519843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 414 - 511
Target Start/End: Complemental strand, 42087584 - 42087487
Alignment:
Q  414 gaaccaagaaagaagttgcagttagctagagagcttggattgcagccaagacaagttgctatatggtttcaaaacaaaagagctagatggaaatcaaa 511  Q
    |||||||| |||||| ||||  | || ||||| ||||| |||||||| ||||||||||||||||||||||| |||| |||||| ||||||||||||||    
T  42087584 gaaccaaggaagaagatgcaacttgcaagagatcttggtttgcagcctagacaagttgctatatggtttcagaacagaagagcaagatggaaatcaaa 42087487  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 443 - 489
Target Start/End: Complemental strand, 16763055 - 16763009
Alignment:
Q  443 agagcttggattgcagccaagacaagttgctatatggtttcaaaaca 489  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||    
T  16763055 agagcttggtttgcaaccaagacaagttgctatatggtttcaaaaca 16763009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 514
Target Start/End: Complemental strand, 17181959 - 17181898
Alignment:
Q  453 ttgcagccaagacaagttgctatatggtttcaaaacaaaagagctagatggaaatcaaagca 514  Q
    ||||| || |||||||||||||||||||||||||| | ||| || ||||||||  |||||||    
T  17181959 ttgcaacctagacaagttgctatatggtttcaaaatagaagggcaagatggaagacaaagca 17181898  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 464 - 517
Target Start/End: Original strand, 42401435 - 42401488
Alignment:
Q  464 acaagttgctatatggtttcaaaacaaaagagctagatggaaatcaaagcaact 517  Q
    ||||||||||||||| ||||||||||| | ||||||| ||||| ||||||||||    
T  42401435 acaagttgctatatgttttcaaaacaagaaagctagaaggaaaccaaagcaact 42401488  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 453 - 517
Target Start/End: Complemental strand, 2342836 - 2342772
Alignment:
Q  453 ttgcagccaagacaagttgctatatggtttcaaaacaaaagagctagatggaaatcaaagcaact 517  Q
    |||||||| |||||| |||||||||||||||| || | |||||| ||||| ||| ||||||||||    
T  2342836 ttgcagcctagacaaattgctatatggtttcagaatagaagagcaagatgcaaaacaaagcaact 2342772  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 488
Target Start/End: Complemental strand, 44593656 - 44593604
Alignment:
Q  436 tagctagagagcttggattgcagccaagacaagttgctatatggtttcaaaac 488  Q
    |||||| ||| ||||| ||||||||| | ||||||||||| ||||||||||||    
T  44593656 tagctaaagaccttggtttgcagccacggcaagttgctatttggtttcaaaac 44593604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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