View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4049_low_1 (Length: 812)

Name: NF4049_low_1
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4049_low_1
NF4049_low_1
[»] chr3 (14 HSPs)
chr3 (18-711)||(8717003-8717698)
chr3 (18-711)||(9068890-9069585)
chr3 (38-703)||(8723350-8724019)
chr3 (38-703)||(9075237-9075906)
chr3 (715-804)||(26847736-26847825)
chr3 (715-803)||(2043735-2043823)
chr3 (321-396)||(8683147-8683222)
chr3 (716-804)||(40034732-40034820)
chr3 (57-139)||(8682421-8682503)
chr3 (325-408)||(8763426-8763509)
chr3 (325-392)||(8768601-8768668)
chr3 (261-377)||(20371595-20371710)
chr3 (105-140)||(8763690-8763725)
chr3 (105-140)||(8768845-8768880)
[»] chr5 (5 HSPs)
chr5 (715-804)||(15434416-15434505)
chr5 (715-804)||(900889-900978)
chr5 (715-804)||(2250330-2250419)
chr5 (763-804)||(30839962-30840003)
chr5 (715-770)||(30839723-30839778)
[»] chr7 (4 HSPs)
chr7 (715-804)||(38174624-38174713)
chr7 (715-801)||(6494747-6494833)
chr7 (715-804)||(45849487-45849577)
chr7 (726-769)||(44732493-44732536)
[»] chr6 (8 HSPs)
chr6 (715-804)||(29396448-29396537)
chr6 (716-804)||(22956984-22957072)
chr6 (716-804)||(23831320-23831408)
chr6 (715-804)||(18141386-18141475)
chr6 (718-804)||(22995981-22996065)
chr6 (718-804)||(23792335-23792419)
chr6 (716-795)||(21203302-21203381)
chr6 (737-793)||(9961216-9961272)
[»] chr1 (2 HSPs)
chr1 (715-804)||(9388564-9388653)
chr1 (715-804)||(10366569-10366658)
[»] chr2 (1 HSPs)
chr2 (715-804)||(33538179-33538268)
[»] chr4 (3 HSPs)
chr4 (741-804)||(33152512-33152575)
chr4 (715-804)||(3684735-3684824)
chr4 (715-770)||(2728259-2728314)
[»] chr8 (2 HSPs)
chr8 (716-795)||(37819877-37819956)
chr8 (715-758)||(24511979-24512022)


Alignment Details
Target: chr3 (Bit Score: 556; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 18 - 711
Target Start/End: Complemental strand, 8717698 - 8717003
Alignment:
Q  18 tgaaaagttttaattttttaggtgaataggtttgaaaaattgaccatattaattactttgaccatattaatatttttt-aatagaactttgaccatatta 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8717698 tgaaaagttttaattttttaggtgaataggtttgaaaaattgaccatattaattactttgaccatattaatatttttttaatagaactttgaccatatta 8717599  T
Q  117 attgttagtttctcattactaataataatattaggagaaaatacttttttcattatcatgtttgtatataaataatctaccaggcattacacttgttgtg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8717598 attgttagtttctcattactaataataatattaggagaaaatacttttttcattatcatgtttgtatataaataatctaccaggcatgacacttgttgtg 8717499  T
Q  217 aaataatggttgtgatatatgttcatccaacaccaagcaacatgatgcaaatacaaccttttacagtgata-ttttcttatcatcatatcaaatcggcga 315  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  8717498 aaataatgtttgtgatatatgttcatccaacaccaagcaacatgatgcaaatacaaccttttacagtgatattttttttatcatcatatcaaatcggcga 8717399  T
Q  316 aataccaaaatgatcattatcaatttacaaagtaagtgttttcttaaatttcatatgtataaatatataaatttgatcactattattgtgcaaactatac 415  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8717398 aatacc-aaatgatcattatcaatttacaaagtaagtgttttcttaaacttcatatgtataaatatataaattttatcactattattgtgcaaactatac 8717300  T
Q  416 ttgtatctaaattttgtattatgttgatttgaaccaaataattatgttaaatgctttcatatattc---nnnnnnnnnngtttcacttaattcttgtttt 512  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||             ||||| || ||||||||||||    
T  8717299 ttgtatctaaattttttattatgttgatttgaaccaaacaattatgttaaatgttttcatatattctttttttttttttgtttctctaaattcttgtttt 8717200  T
Q  513 cgttttgttgtttagaacaataatttatttaaatacttgccatggttgaattctaaatcccaaaagtaaaatatttgtacgtttcaccaaatttttgttc 612  Q
    |   ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8717199 c--cttgttgtttagaacaataatttatttaaatacttgtcatggttgaattttaaatcccaaaagtaaaatatttgtacgtttcaccaaatttttgttc 8717102  T
Q  613 aatttctcttatgggtgtctacttattaatgtacaaggttatgcgaatcccaatgttgatagtgaggttttttaccatgcaaactctatatcattttac 711  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  8717101 aatttctcttatgggtgtctacttatttatgtacaaggttatgcgaatcccaatgttgatagtgaggttgtttaccatgcaaaatctatatcattttac 8717003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 18 - 711
Target Start/End: Complemental strand, 9069585 - 9068890
Alignment:
Q  18 tgaaaagttttaattttttaggtgaataggtttgaaaaattgaccatattaattactttgaccatattaatatttttt-aatagaactttgaccatatta 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  9069585 tgaaaagttttaattttttaggtgaataggtttgaaaaattgaccatattaattactttgaccatattaatatttttttaatagaactttgaccatatta 9069486  T
Q  117 attgttagtttctcattactaataataatattaggagaaaatacttttttcattatcatgtttgtatataaataatctaccaggcattacacttgttgtg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9069485 attgttagtttctcattactaataataatattaggagaaaatacttttttcattatcatgtttgtatataaataatctaccaggcatgacacttgttgtg 9069386  T
Q  217 aaataatggttgtgatatatgttcatccaacaccaagcaacatgatgcaaatacaaccttttacagtgata-ttttcttatcatcatatcaaatcggcga 315  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  9069385 aaataatgtttgtgatatatgttcatccaacaccaagcaacatgatgcaaatacaaccttttacagtgatattttttttatcatcatatcaaatcggcga 9069286  T
Q  316 aataccaaaatgatcattatcaatttacaaagtaagtgttttcttaaatttcatatgtataaatatataaatttgatcactattattgtgcaaactatac 415  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9069285 aatacc-aaatgatcattatcaatttacaaagtaagtgttttcttaaacttcatatgtataaatatataaattttatcactattattgtgcaaactatac 9069187  T
Q  416 ttgtatctaaattttgtattatgttgatttgaaccaaataattatgttaaatgctttcatatattc---nnnnnnnnnngtttcacttaattcttgtttt 512  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||             ||||| || ||||||||||||    
T  9069186 ttgtatctaaattttttattatgttgatttgaaccaaacaattatgttaaatgttttcatatattctttttttttttttgtttctctaaattcttgtttt 9069087  T
Q  513 cgttttgttgtttagaacaataatttatttaaatacttgccatggttgaattctaaatcccaaaagtaaaatatttgtacgtttcaccaaatttttgttc 612  Q
    |   ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9069086 c--cttgttgtttagaacaataatttatttaaatacttgtcatggttgaattttaaatcccaaaagtaaaatatttgtacgtttcaccaaatttttgttc 9068989  T
Q  613 aatttctcttatgggtgtctacttattaatgtacaaggttatgcgaatcccaatgttgatagtgaggttttttaccatgcaaactctatatcattttac 711  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  9068988 aatttctcttatgggtgtctacttatttatgtacaaggttatgcgaatcccaatgttgatagtgaggttgtttaccatgcaaaatctatatcattttac 9068890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 38 - 703
Target Start/End: Complemental strand, 8724019 - 8723350
Alignment:
Q  38 ggtgaataggtttgaaaaattgaccatattaattactttgaccatattaatattttttaatagaactttgaccatattaattgttagtttctcattacta 137  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| | |  ||||||| || |||||||| ||||||||||||| |||||||||||||    
T  8724019 ggtgaataggtttgaacaattgaccatattaattactttgaccatataact--tttttaa-aggactttgactatattaattgttactttctcattacta 8723923  T
Q  138 ataataatattaggagaaaatacttttttcattatcatgtttgtatataaataatctaccaggcattacacttgttgtgaaataatggttgtgatatatg 237  Q
    |||||||||||| |||||||||| ||||| |||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||    
T  8723922 ataataatattatgagaaaatacattttttattatcttgtttgtatataaataatctatcaggcattacatttgttgtgaaataatgtttgtgatatatg 8723823  T
Q  238 ttcatccaacaccaagcaacatgatgcaaatacaaccttttacagtgatattttcttatcatcatatcaaatcggcgaaataccaaaatgatcattatca 337  Q
    ||||||||||||||| ||||   ||| ||||||||||||| | || ||||||||||||||||||||||||||||  ||||||||||||| | | ||||||    
T  8723822 ttcatccaacaccaaacaactgtatggaaatacaacctttgatagcgatattttcttatcatcatatcaaatcgatgaaataccaaaat-accgttatca 8723724  T
Q  338 atttacaaagtaagtgttttcttaaatttcatatgtataaatatataaatttgatcactattattgtgcaaactatacttgtatctaaattttgtattat 437  Q
    |||||||||||||||||| ||||||| |||| |||||||| | |||| ||||||||||||| ||||||||||||||||| |||  |||||||||||||||    
T  8723723 atttacaaagtaagtgttctcttaaagttcaaatgtataagtctatagatttgatcactatcattgtgcaaactatactcgtagttaaattttgtattat 8723624  T
Q  438 gttgatttgaaccaaataattatgttaaatgctttcatatattcnnnnnnnnnngtttcacttaattcttgttttcgttttgttgtttagaacaataatt 537  Q
     ||||||||||| ||| |||||||| ||||| |||  | | ||             ||| | |||||||||||||||||||| |||||| |||||||||     
T  8723623 attgatttgaactaaacaattatgtcaaatgatttttttttttttttc--------ttctcataattcttgttttcgttttgctgtttataacaataata 8723532  T
Q  538 tatttaaatacttgccatggttgaattctaaatcccaaaagtaaaa------tatttgtacgtttcaccaaatttttgttcaatttctcttatgggtgtc 631  Q
    ||||||||| |||| |||||||||||| ||||||||||||||||||      || || ||||||||||||||||||||||||| | ||||||||||||||    
T  8723531 tatttaaatgcttgtcatggttgaattttaaatcccaaaagtaaaacgtttgtacttctacgtttcaccaaatttttgttcaactgctcttatgggtgtc 8723432  T
Q  632 tacttattaatgtac----------aaggttatgcgaatcccaatgttgatagtgaggttttttaccatgcaaactctatat 703  Q
    | |||||| ||| ||          ||||||||| |||||||||||||||| ||||| || |||||||||||||||||||||    
T  8723431 tgcttatttatgaacaaggttgaataaggttatgtgaatcccaatgttgatcgtgagattctttaccatgcaaactctatat 8723350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 38 - 703
Target Start/End: Complemental strand, 9075906 - 9075237
Alignment:
Q  38 ggtgaataggtttgaaaaattgaccatattaattactttgaccatattaatattttttaatagaactttgaccatattaattgttagtttctcattacta 137  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| | |  ||||||| || |||||||| ||||||||||||| |||||||||||||    
T  9075906 ggtgaataggtttgaacaattgaccatattaattactttgaccatataact--tttttaa-aggactttgactatattaattgttactttctcattacta 9075810  T
Q  138 ataataatattaggagaaaatacttttttcattatcatgtttgtatataaataatctaccaggcattacacttgttgtgaaataatggttgtgatatatg 237  Q
    |||||||||||| |||||||||| ||||| |||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||    
T  9075809 ataataatattatgagaaaatacattttttattatcttgtttgtatataaataatctatcaggcattacatttgttgtgaaataatgtttgtgatatatg 9075710  T
Q  238 ttcatccaacaccaagcaacatgatgcaaatacaaccttttacagtgatattttcttatcatcatatcaaatcggcgaaataccaaaatgatcattatca 337  Q
    ||||||||||||||| ||||   ||| ||||||||||||| | || ||||||||||||||||||||||||||||  ||||||||||||| | | ||||||    
T  9075709 ttcatccaacaccaaacaactgtatggaaatacaacctttgatagcgatattttcttatcatcatatcaaatcgatgaaataccaaaat-accgttatca 9075611  T
Q  338 atttacaaagtaagtgttttcttaaatttcatatgtataaatatataaatttgatcactattattgtgcaaactatacttgtatctaaattttgtattat 437  Q
    |||||||||||||||||| ||||||| |||| |||||||| | |||| ||||||||||||| ||||||||||||||||| |||  |||||||||||||||    
T  9075610 atttacaaagtaagtgttctcttaaagttcaaatgtataagtctatagatttgatcactatcattgtgcaaactatactcgtagttaaattttgtattat 9075511  T
Q  438 gttgatttgaaccaaataattatgttaaatgctttcatatattcnnnnnnnnnngtttcacttaattcttgttttcgttttgttgtttagaacaataatt 537  Q
     ||||||||||| ||| |||||||| ||||| |||  | | ||             ||| | |||||||||||||||||||| |||||| |||||||||     
T  9075510 attgatttgaactaaacaattatgtcaaatgatttttttttttttttc--------ttctcataattcttgttttcgttttgctgtttataacaataata 9075419  T
Q  538 tatttaaatacttgccatggttgaattctaaatcccaaaagtaaaa------tatttgtacgtttcaccaaatttttgttcaatttctcttatgggtgtc 631  Q
    ||||||||| |||| |||||||||||| ||||||||||||||||||      || || ||||||||||||||||||||||||| | ||||||||||||||    
T  9075418 tatttaaatgcttgtcatggttgaattttaaatcccaaaagtaaaacgtttgtacttctacgtttcaccaaatttttgttcaactgctcttatgggtgtc 9075319  T
Q  632 tacttattaatgtac----------aaggttatgcgaatcccaatgttgatagtgaggttttttaccatgcaaactctatat 703  Q
    | |||||| ||| ||          ||||||||| |||||||||||||||| ||||| || |||||||||||||||||||||    
T  9075318 tgcttatttatgaacaaggttgaataaggttatgtgaatcccaatgttgatcgtgagattctttaccatgcaaactctatat 9075237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 715 - 804
Target Start/End: Complemental strand, 26847825 - 26847736
Alignment:
Q  715 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 804  Q
    |||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||| | |||| |||||||||    
T  26847825 gaatgatatgtgaacaatcaaattgtacaaccaacaacttatttgctatttttaatgatattttgcatgattttgttttccgtgctcctc 26847736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 715 - 803
Target Start/End: Original strand, 2043735 - 2043823
Alignment:
Q  715 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcct 803  Q
    ||||||||||  || ||| ||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||| |||||||||    
T  2043735 gaatgatatgtaaataactaaattgtacaaccaacaacttatttgctatctttaatgatattttgattgatttcgatttatgtgctcct 2043823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 321 - 396
Target Start/End: Original strand, 8683147 - 8683222
Alignment:
Q  321 caaaatgatcattatcaatttacaaagtaagtgttttcttaaatttcatatgtataaatatataaatttgatcact 396  Q
    |||||||| |||||||||||||||||||||| ||| |||||||||||| ||| |||||||||||| ||||||||||    
T  8683147 caaaatgaccattatcaatttacaaagtaagcgttctcttaaatttcaaatgcataaatatataattttgatcact 8683222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 716 - 804
Target Start/End: Original strand, 40034732 - 40034820
Alignment:
Q  716 aatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 804  Q
    ||||||||| |||||  |||||||||||||||| |||||||||  |||||||||| ||||||| | ||||||  ||||| |||||||||    
T  40034732 aatgatatgtgaacattcaaattgtacaaccaacaacttatttattatttttaataatattttacatgattttaatttccgtgctcctc 40034820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 139
Target Start/End: Original strand, 8682421 - 8682503
Alignment:
Q  57 ttgaccatattaattacttt-gaccatattaatattttttaatagaactttgaccatattaattgttagtttctcattactaat 139  Q
    ||||| ||||||||| |||| |||||||||||| |||||| |  ||| ||||||||||||||||||||||| ||||||||||||    
T  8682421 ttgactatattaatttcttttgaccatattaattttttttgag-gaaatttgaccatattaattgttagttgctcattactaat 8682503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 325 - 408
Target Start/End: Complemental strand, 8763509 - 8763426
Alignment:
Q  325 atgatcattatcaatttacaaagtaagtgttttcttaaatttcatatgtataaatatataaatttgatcactattattgtgcaa 408  Q
    |||| ||||||||||||  |||||||||||| |||||||||||| ||  |||||||||||| ||| || ||| || ||||||||    
T  8763509 atgaccattatcaatttgaaaagtaagtgttctcttaaatttcaaattcataaatatataatttttataactctttttgtgcaa 8763426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 325 - 392
Target Start/End: Complemental strand, 8768668 - 8768601
Alignment:
Q  325 atgatcattatcaatttacaaagtaagtgttttcttaaatttcatatgtataaatatataaatttgat 392  Q
    |||| ||||||||||||  |||||||||||| |||||||||||| ||  |||||||||||| ||||||    
T  8768668 atgaccattatcaatttgaaaagtaagtgttctcttaaatttcaaattcataaatatataattttgat 8768601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 261 - 377
Target Start/End: Complemental strand, 20371710 - 20371595
Alignment:
Q  261 atgcaaatacaaccttttacagtgatattttcttatcatcatatcaaatcggcgaaataccaaaatgatcattatcaatttacaaagtaagtgttttctt 360  Q
    ||||||||| | ||||| | | ||||||||  |||||| |||||||||||| ||||||||||||   ||| |||  |||||  || ||||||||| ||||    
T  20371710 atgcaaataaagcctttgaaaatgatatttgtttatcaccatatcaaatcgacgaaataccaaaca-atctttaataattttaaaggtaagtgttctctt 20371612  T
Q  361 aaatttcatatgtataa 377  Q
    ||||| |||||||||||    
T  20371611 aaattgcatatgtataa 20371595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 8763725 - 8763690
Alignment:
Q  105 ttgaccatattaattgttagtttctcattactaata 140  Q
    |||||||||||||||||||||||||||||| |||||    
T  8763725 ttgaccatattaattgttagtttctcattaataata 8763690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 8768880 - 8768845
Alignment:
Q  105 ttgaccatattaattgttagtttctcattactaata 140  Q
    |||||||||||||||||||||||||||||| |||||    
T  8768880 ttgaccatattaattgttagtttctcattaataata 8768845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 2e-33; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 715 - 804
Target Start/End: Original strand, 15434416 - 15434505
Alignment:
Q  715 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 804  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  15434416 gaatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctacttttaatgatattttgcttgattttgatttctgtgctcctc 15434505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 715 - 804
Target Start/End: Original strand, 900889 - 900978
Alignment:
Q  715 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 804  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| | ||||  ||||||||    
T  900889 gaatgatatgtgaacaaccaaattgtacaaccaacaacttatttgctatttttaatgatattttgcatgattttgttttccatgctcctc 900978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 715 - 804
Target Start/End: Original strand, 2250330 - 2250419
Alignment:
Q  715 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 804  Q
    |||||||||| ||| || |||||||||||| ||| || ||||||  |||||||||||||||||||| |||||| |||||| || ||||||    
T  2250330 gaatgatatgtgaagaatcaaattgtacaatcaacaatttatttattatttttaatgatattttgcatgattttgatttccgtactcctc 2250419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 763 - 804
Target Start/End: Original strand, 30839962 - 30840003
Alignment:
Q  763 tttttaatgatattttgcttgatttcgatttctgtgctcctc 804  Q
    |||||||| |||||||||||||||||||||||||| ||||||    
T  30839962 tttttaataatattttgcttgatttcgatttctgtactcctc 30840003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 715 - 770
Target Start/End: Original strand, 30839723 - 30839778
Alignment:
Q  715 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaat 770  Q
    |||||||||| ||||||| ||||||||| ||||| || ||| ||||||||||||||    
T  30839723 gaatgatatgtgaacaactaaattgtacgaccaacaatttacttgctatttttaat 30839778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 4e-31; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 715 - 804
Target Start/End: Original strand, 38174624 - 38174713
Alignment:
Q  715 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 804  Q
    |||||||| | |||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||    
T  38174624 gaatgatacgtgaacaaccaaattgtacaaccaataacttacttgatatttttaataatattttgcttgatttcgatttctgtgctcctc 38174713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 715 - 801
Target Start/End: Original strand, 6494747 - 6494833
Alignment:
Q  715 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctc 801  Q
    |||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| | |||| ||||||    
T  6494747 gaatgatatgtgaacaacaaaattgtacaatcaataacttatttgctatttttaatgatattttgcatgattttgttttccgtgctc 6494833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 715 - 804
Target Start/End: Complemental strand, 45849577 - 45849487
Alignment:
Q  715 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttga-tttcgatttctgtgctcctc 804  Q
    |||||||| | |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||| |||| ||||||||||    
T  45849577 gaatgatacgtgaacaaccaaattgtacaaccaataatttatttgctatttttaataatattttgcttgattttcaatttatgtgctcctc 45849487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 726 - 769
Target Start/End: Complemental strand, 44732536 - 44732493
Alignment:
Q  726 gaacaaccaaattgtacaaccaataacttatttgctatttttaa 769  Q
    |||||| ||| ||||||||||||||||||||||| |||||||||    
T  44732536 gaacaatcaatttgtacaaccaataacttatttgttatttttaa 44732493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 4e-31; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 715 - 804
Target Start/End: Original strand, 29396448 - 29396537
Alignment:
Q  715 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 804  Q
    |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  29396448 gaatgatatgtgaacagccaaattgtacaaccaacaacttatttgctatttttaatgatattttgattgatttcgatttttgtgctcctc 29396537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 716 - 804
Target Start/End: Original strand, 22956984 - 22957072
Alignment:
Q  716 aatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 804  Q
    |||||||||  || ||||||||||||||||||| |||||| |||||||||||||| ||||||| |||||||||||||| ||||||||||    
T  22956984 aatgatatgtaaataaccaaattgtacaaccaacaacttacttgctatttttaataatattttacttgatttcgatttatgtgctcctc 22957072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 716 - 804
Target Start/End: Complemental strand, 23831408 - 23831320
Alignment:
Q  716 aatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 804  Q
    |||||||||  || ||||||||||||||||||| |||||| |||||||||||||| ||||||| |||||||||||||| ||||||||||    
T  23831408 aatgatatgtaaataaccaaattgtacaaccaacaacttacttgctatttttaataatattttacttgatttcgatttatgtgctcctc 23831320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 715 - 804
Target Start/End: Original strand, 18141386 - 18141475
Alignment:
Q  715 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 804  Q
    |||||||||| |||||||||||| |||||||||  ||||||||| ||||||||||| ||||||| |||||||||||||| ||| ||||||    
T  18141386 gaatgatatgtgaacaaccaaatcgtacaaccagcaacttattttctatttttaataatattttacttgatttcgatttatgtactcctc 18141475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 718 - 804
Target Start/End: Original strand, 22995981 - 22996065
Alignment:
Q  718 tgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 804  Q
    ||||||| |||||||||||||||| |||||| |||||  |||||||||||||| ||||||||| |||||||||||| ||||||||||    
T  22995981 tgatatgtgaacaaccaaattgtataaccaacaactt--ttgctatttttaataatattttgcctgatttcgatttatgtgctcctc 22996065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 718 - 804
Target Start/End: Complemental strand, 23792419 - 23792335
Alignment:
Q  718 tgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 804  Q
    ||||||| |||||||||||||||| |||||| |||||  |||||||||||||| ||||||||| |||||||||||| ||||||||||    
T  23792419 tgatatgtgaacaaccaaattgtataaccaacaactt--ttgctatttttaataatattttgcctgatttcgatttatgtgctcctc 23792335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 716 - 795
Target Start/End: Complemental strand, 21203381 - 21203302
Alignment:
Q  716 aatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttct 795  Q
    ||||||||| ||||||||||||||||||| ||| |||||| ||| |||||||||| || ||||||||||||| |||||||    
T  21203381 aatgatatgtgaacaaccaaattgtacaatcaacaacttacttgatatttttaataatgttttgcttgattttgatttct 21203302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 737 - 793
Target Start/End: Complemental strand, 9961272 - 9961216
Alignment:
Q  737 ttgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgattt 793  Q
    |||||||||||| |||||||||||||||||| |  || ||||| |||||||||||||    
T  9961272 ttgtacaaccaacaacttatttgctattttttaatattttttgattgatttcgattt 9961216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 6e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 715 - 804
Target Start/End: Original strand, 9388564 - 9388653
Alignment:
Q  715 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 804  Q
    |||||||||| ||||||  ||||||||||||||| ||||||||| ||||||||||||||||||||  |||||||||||| ||||||||||    
T  9388564 gaatgatatgtgaacaattaaattgtacaaccaacaacttatttactatttttaatgatattttgtctgatttcgatttatgtgctcctc 9388653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 715 - 804
Target Start/End: Original strand, 10366569 - 10366658
Alignment:
Q  715 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 804  Q
    |||||||| | |||||| |||||||||||||||| |||||||||| ||||||||||||||||||  ||||||||||||| ||||||||||    
T  10366569 gaatgatacgtgaacaatcaaattgtacaaccaacaacttatttgttatttttaatgatattttatttgatttcgatttatgtgctcctc 10366658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 715 - 804
Target Start/End: Original strand, 33538179 - 33538268
Alignment:
Q  715 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 804  Q
    |||||||||| ||| || |||||||||||||||| ||||||||| ||||||||||||||||||||| |||||| |||||| || ||||||    
T  33538179 gaatgatatgtgaaaaatcaaattgtacaaccaacaacttatttactatttttaatgatattttgcatgattttgatttccgtactcctc 33538268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 741 - 804
Target Start/End: Complemental strand, 33152575 - 33152512
Alignment:
Q  741 acaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 804  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||| |||||| |||||||||    
T  33152575 acaaccaacaacttatttgctatttttaatgatattttgcatgattttgatttccgtgctcctc 33152512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 715 - 804
Target Start/End: Original strand, 3684735 - 3684824
Alignment:
Q  715 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttctgtgctcctc 804  Q
    |||| ||||| ||||||| |||||||| |||||| ||  ||||||||||||||||| ||||||||  |||||||||||| ||||||||||    
T  3684735 gaataatatgtgaacaactaaattgtaaaaccaacaatatatttgctatttttaataatattttgtctgatttcgatttttgtgctcctc 3684824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 715 - 770
Target Start/End: Original strand, 2728259 - 2728314
Alignment:
Q  715 gaatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaat 770  Q
    |||||||||| ||||||| ||||| ||||||||| |||||| ||||||||||||||    
T  2728259 gaatgatatgtgaacaactaaattatacaaccaacaacttacttgctatttttaat 2728314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 716 - 795
Target Start/End: Complemental strand, 37819956 - 37819877
Alignment:
Q  716 aatgatatgcgaacaaccaaattgtacaaccaataacttatttgctatttttaatgatattttgcttgatttcgatttct 795  Q
    ||||||||  ||||||| ||||||||||||||| || ||||||||||| |||||| |||||||   ||||||||||||||    
T  37819956 aatgatatttgaacaactaaattgtacaaccaacaatttatttgctatgtttaataatattttatctgatttcgatttct 37819877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 715 - 758
Target Start/End: Original strand, 24511979 - 24512022
Alignment:
Q  715 gaatgatatgcgaacaaccaaattgtacaaccaataacttattt 758  Q
    |||||||||  ||||||||||||||||||||||| |||||||||    
T  24511979 gaatgatatctgaacaaccaaattgtacaaccaacaacttattt 24512022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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