View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4049_low_10 (Length: 397)
Name: NF4049_low_10
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4049_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 271 - 372
Target Start/End: Complemental strand, 18268872 - 18268770
Alignment:
| Q |
271 |
aagaatattcaaatttatcaagagcaagacaatcaaaattcaaaatgaaatt-gggtgtagtgaacagtaatattccacctcattccaagttcgaaccag |
369 |
Q |
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| T |
18268872 |
aagaatattcaaatttatcaagagcaagacaatcaaaattcaaaatgaaattggggtgtagtgaatagtaatattccacctcattccaagttcgaaccag |
18268773 |
T |
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| Q |
370 |
ggt |
372 |
Q |
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||| |
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| T |
18268772 |
ggt |
18268770 |
T |
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Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 126 - 211
Target Start/End: Complemental strand, 18294223 - 18294138
Alignment:
| Q |
126 |
tgtgacaataagtggatacaatttgttggctaactaaacaataagttgtgataagattatgcttctctttcttatatttataatta |
211 |
Q |
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| T |
18294223 |
tgtgacaataagtgaatacaatttgttggctaactaaacaataagttgtgataagattatgattctctttcttatattaataatta |
18294138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 9051974 - 9051922
Alignment:
| Q |
188 |
ttctctttcttatatttataattatttcttaaaatatgtgaaatgaacaaaaa |
240 |
Q |
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| T |
9051974 |
ttctctttcttatatttatatatttttcttaatacatgtgaaatgaacaaaaa |
9051922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 35094345 - 35094294
Alignment:
| Q |
188 |
ttctctttcttatatttataattatttcttaaaatatgtgaaatgaacaaaa |
239 |
Q |
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||||||||||| ||||||| ||||||||||| || |||||||||||||||| |
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| T |
35094345 |
ttctctttcttttatttatttttatttcttaatatgtgtgaaatgaacaaaa |
35094294 |
T |
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