View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4049_low_11 (Length: 396)
Name: NF4049_low_11
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4049_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 384
Target Start/End: Complemental strand, 9938626 - 9938259
Alignment:
| Q |
17 |
gaacagattgcagatattatgacttggcctttgaagctggaaaccttttgcaaattgagggagaaactaggcatctgtgaaatgtcttaattctttgtga |
116 |
Q |
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| T |
9938626 |
gaacagattgcagatattatgacttggcttttgaagctggaaaccttttgcaaattgagggagaaactaggcatctgtgaaatgtcttaattctttgtga |
9938527 |
T |
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| Q |
117 |
tatatgtttgtaaactaaatttgtttgtcataaggttcagtttaggagagtgattgttaggatatgcttgttacaagttagttagaagttagttgtggaa |
216 |
Q |
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| T |
9938526 |
tatatgtctgtaaactaaatttgtttgtcataaggttcagtttaggagagtaattgttaggatatgcttgttacaagttagttagaagttagttgtggaa |
9938427 |
T |
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| Q |
217 |
gttacttagctctcaagtaactcagtttgttgtgtatctcagtttgctatatataggacctttgtatcaaaccatgattcaataatgagaatacactttt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
9938426 |
gttacttagctctcaagtaactcagtttgttgtgta-ctcagtttgctatatataggagctttgtatcaaaccataattcaataatgagaatacactttt |
9938328 |
T |
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| Q |
317 |
acataacacaacactcgctccagcagatatcg-aacccatgaggtctatatctgattcagtttgagtat |
384 |
Q |
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| T |
9938327 |
acataacacaacactcgctccagcagatatcgaaacctatgaggtccatatctgattcagtctgagtat |
9938259 |
T |
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Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 202 - 324
Target Start/End: Original strand, 30288244 - 30288366
Alignment:
| Q |
202 |
aagttagttgtggaagttacttagctctcaagtaactcag-tttgttgtgtatctcagtttgctatatataggacctttgtatcaaaccatgattcaata |
300 |
Q |
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||||||||| | |||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||| | ||||| |||||||| |||||||| |
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| T |
30288244 |
aagttagttttagaagttacttagcttgcaagtaactcagttttgtagtgtatctcagtttgctatatatagcagtcttgtaccaaaccat-attcaata |
30288342 |
T |
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| Q |
301 |
atgagaatacacttttacataaca |
324 |
Q |
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||||||||| | |||||| ||||| |
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| T |
30288343 |
atgagaataaatttttacctaaca |
30288366 |
T |
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