View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4049_low_12 (Length: 390)
Name: NF4049_low_12
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4049_low_12 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 15 - 371
Target Start/End: Complemental strand, 45067489 - 45067133
Alignment:
| Q |
15 |
cacagaatcagctgttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttgaacacaatgaaatatgtt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45067489 |
cacagaatcagctgttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttgaacacaatgaaatatgtt |
45067390 |
T |
|
| Q |
115 |
ttttggatgacaggggcttataagtcacacgctgaaaatggatttgatccaaaagcattgcctaaaattagtggaataaactatagagatataattgcta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45067389 |
ttttggatgacaggggcttataagtcacacgctgaaaatggatttgatccaaaagcattgcctaaaattagtggaataaactatagagatattattgcta |
45067290 |
T |
|
| Q |
215 |
agaatgtgacaattgcaggacaacttgacggaatttctaatgaccctttcacagggatatgcatttctaatgtgactattgaaatgagtgcacagaagaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45067289 |
agaatgtgacaattgcaggacaacttgacggaatttctaatgaccctttcacagggatatgcatttctaatgtgactattgaaatgagtgcacagaagaa |
45067190 |
T |
|
| Q |
315 |
taatcttccatggaattgcactgatgtttctggagttgcaagtaatgtggttcctaa |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
45067189 |
taatcttccatggaattgcactgatgtttctggagttgcaagtaatgcggttcctaa |
45067133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 363
Target Start/End: Complemental strand, 45075048 - 45074701
Alignment:
| Q |
16 |
acagaatcagctgttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttgaacacaatgaaatatgttt |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| || || |||||||||||||||||| |||||||||||||||||| |
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|
| T |
45075048 |
acagaatcggctgttagaatcaaaacagccatcggtagaggcgcatatgtgaaggacatttttgtcaaaggaatgaatttggacacaatgaaatatgttt |
45074949 |
T |
|
| Q |
116 |
tttggatgacaggggcttataagtcacacgctgaaaatggatttgatccaaaagcattgcctaaaattagtggaataaactatagagatataattgctaa |
215 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||| |||||| ||||||||| | | ||| || |
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|
| T |
45074948 |
tttggatgacagggtcttataagtcacaccctgataatggatttgatccaaacgcattgcctaaaattagtgaaataaattatagagatgttactgccaa |
45074849 |
T |
|
| Q |
216 |
gaatgtgacaattgcaggacaacttgacggaatttctaatgaccctttcacagggatatgcatttctaatgtgactattgaaatgagtgcacagaagaat |
315 |
Q |
| |
|
||||||||| |||||||| ||||||| |||||||||||||||||||| || || || || ||||||||| ||||||||||||||||||||| ||||| |
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|
| T |
45074848 |
gaatgtgactattgcaggcaaacttgatggaatttctaatgacccttttactggaatttgtgtttctaatgcgactattgaaatgagtgcacataagaag |
45074749 |
T |
|
| Q |
316 |
aatcttccatggaattgcactgatgtttctggagttgcaagtaatgtg |
363 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45074748 |
aaacttccatggaattgcactgatgtttctggagttacaagtaatgtg |
45074701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 15 - 371
Target Start/End: Complemental strand, 45078279 - 45077923
Alignment:
| Q |
15 |
cacagaatcagctgttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttgaacacaatgaaatatgtt |
114 |
Q |
| |
|
||||||||| ||| ||||||| ||| | || || |||||||| || | ||||||||| || ||||||||||||||| ||||||| |||||||||||||| |
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|
| T |
45078279 |
cacagaatccgctattagaataaaatctgctgtcggtagaggtgcttttgtgaaggacattttcgtcaaaggaatggatttgaatacaatgaaatatgtg |
45078180 |
T |
|
| Q |
115 |
ttttggatgacaggggcttataagtcacacgctgaaaatggatttgatccaaaagcattgcctaaaattagtggaataaactatagagatataattgcta |
214 |
Q |
| |
|
|||||||||||||| ||||| || |||| || |||||||||||||| |||||||||||||||||||||||||| ||||||||| | | |||| |
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|
| T |
45078179 |
ttttggatgacaggttcttatggagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgcta |
45078080 |
T |
|
| Q |
215 |
agaatgtgacaattgcaggacaacttgacggaatttctaatgaccctttcacagggatatgcatttctaatgtgactattgaaatgagtgcacagaagaa |
314 |
Q |
| |
|
|||||||||| ||||| || ||||||| ||||||||||| |||||||| || || ||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45078079 |
agaatgtgactattgcgggcaaacttgaaggaatttctaacgacccttttactggaatatgtgtttctaatgtgactattgaaatgagtgcacataagaa |
45077980 |
T |
|
| Q |
315 |
taatcttccatggaattgcactgatgtttctggagttgcaagtaatgtggttcctaa |
371 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
45077979 |
gaaacttccatggaattgcactgatatttctggagttacaagtaatgtggttcctaa |
45077923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 16 - 371
Target Start/End: Complemental strand, 45082574 - 45082219
Alignment:
| Q |
16 |
acagaatcagctgttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttgaacacaatgaaatatgttt |
115 |
Q |
| |
|
||||||||||||||||| |||||| | ||||| |||||||| || | ||||||||| || || |||||||||||| ||||||| ||| |||||||||| | |
|
|
| T |
45082574 |
acagaatcagctgttaggatcaaatctgccgtcggtagaggtgcttttgtgaaggacatttttgtcaaaggaatggatttgaatacattgaaatatgtgt |
45082475 |
T |
|
| Q |
116 |
tttggatgacaggggcttataagtcacacgctgaaaatggatttgatccaaaagcattgcctaaaattagtggaataaactatagagatataattgctaa |
215 |
Q |
| |
|
||||||||||||| ||||| || |||| || |||||||||||||| |||||||||||||||||||||||||| ||||||||| | | ||||| |
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|
| T |
45082474 |
tttggatgacaggttcttatggagatcatcctgataacggatttgatccaaacgcattgcctaaaattagtggaataaattatagagatgtcaccgctaa |
45082375 |
T |
|
| Q |
216 |
gaatgtgacaattgcaggacaacttgacggaatttctaatgaccctttcacagggatatgcatttctaatgtgactattgaaatgagtgcacagaagaat |
315 |
Q |
| |
|
||||||||| ||||| || || |||| ||||||||||| |||||||| || || ||||| ||||||||||||||||||||||||||||||| ||||| |
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|
| T |
45082374 |
gaatgtgactattgcgggcaaagttgaaggaatttctaacgacccttttactggaatatgtgtttctaatgtgactattgaaatgagtgcacataagaag |
45082275 |
T |
|
| Q |
316 |
aatcttccatggaattgcactgatgtttctggagttgcaagtaatgtggttcctaa |
371 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
45082274 |
aaacttccatggaattgcactgatatttctggagttacaagtaatgtggttcctaa |
45082219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 16 - 371
Target Start/End: Complemental strand, 34504823 - 34504459
Alignment:
| Q |
16 |
acagaatcagctgttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttgaacacaat---gaaatatg |
112 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||||| |||||||||||| || || ||||||||| |||| ||||||||||| || ||||| |
|
|
| T |
34504823 |
acagaatcagctgttagaatcaaatcagccgtcggtagaggcggatatgtgaaggacatttttgtcaaaggagtgaaattgaacacaatattgagatatg |
34504724 |
T |
|
| Q |
113 |
ttttttggatgacaggggcttata-agtcacacgctgaaaatggatttgatccaaaagcattgcctaaaattagtggaataaactatagagatataattg |
211 |
Q |
| |
|
| |||||| |||||||| ||||| || | ||| |||| |||||||||||||||||||||||||||||||||| |||||| | | ||||||| | |||| |
|
|
| T |
34504723 |
tgttttggttgacagggtcttatggagac-caccctgataatggatttgatccaaaagcattgcctaaaattactggaattatttttagagatgttattg |
34504625 |
T |
|
| Q |
212 |
ctaagaatgtgacaattgcaggacaacttgacggaatttctaatgaccctttcacagggatatgcatttctaatgtgactattgaaatgagtgcac---- |
307 |
Q |
| |
|
||||||||||||| |||| || |||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| | || | | |
|
|
| T |
34504624 |
ctaagaatgtgaccgttgcggggcaacttgaaggaatttctaatgatccttttacagggatatgtatttctaatgtgactattgaattaagcgagcttaa |
34504525 |
T |
|
| Q |
308 |
--agaagaataatcttccatggaattgcactgatgtttctggagttgcaagtaatgtggttcctaa |
371 |
Q |
| |
|
||||||| || ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34504524 |
gaagaagaagaaacttccatggaattgcacagatgtttctggagttacaagtaatgtggttcctaa |
34504459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 29765466 - 29765526
Alignment:
| Q |
16 |
acagaatcagctgttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatat |
76 |
Q |
| |
|
|||||||||| ||| |||||||||||||| ||||||||||| | ||||||||||| |||| |
|
|
| T |
29765466 |
acagaatcaggtgtcagaatcaaaacagctgttggtagaggagggtatgtgaaggacatat |
29765526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 17584522 - 17584414
Alignment:
| Q |
20 |
aatcagctgttagaatcaaaacagccgttggtagaggcgcatatgtgaaggatatattcgtcaaaggaatgaatttgaacacaatgaaatatgttttttg |
119 |
Q |
| |
|
|||||||| ||||||||||||| || ||||||||||| ||||||||||| | |||||| || | ||||||||| ||||| |||||||||||||| ||||| |
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|
| T |
17584522 |
aatcagctattagaatcaaaactgcagttggtagaggagcatatgtgaaaggtatatttgttagaggaatgaaattgaaaacaatgaaatatgtgttttg |
17584423 |
T |
|
| Q |
120 |
gatgacagg |
128 |
Q |
| |
|
||||||||| |
|
|
| T |
17584422 |
gatgacagg |
17584414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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