View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4049_low_14 (Length: 352)
Name: NF4049_low_14
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4049_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 136 - 333
Target Start/End: Complemental strand, 22944546 - 22944349
Alignment:
| Q |
136 |
aagcctccattgaacaggctcattgtgttttacattgctttgatatgttctgccaatcttctgggcaaaaaattaatagagaaaaaagtcaggtgtattt |
235 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
22944546 |
aagcctccattgaacaggctcattgtgttttacattgccttgatatgttctgccaatcttctgggcaaaaaattaatagagaaaaaactcaggtgtattt |
22944447 |
T |
|
| Q |
236 |
ttccaagaatgttgacaaccatcttcggaaagatattattcaacatacagggtttaatcaggttaacagtttgggtaaatatcttggggcgaatataa |
333 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22944446 |
ttccaagaatgttgacaaccatcttcgggaagatattattcaacatacagggtttaatcaggttaacagtttgggtaaatatcttggggcgaatataa |
22944349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 136 - 333
Target Start/End: Complemental strand, 38112592 - 38112395
Alignment:
| Q |
136 |
aagcctccattgaacaggctcattgtgttttacattgctttgatatgttctgccaatcttctgggcaaaaaattaatagagaaaaaagtcaggtgtattt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
38112592 |
aagcctccattgaacaggctcattgtgttttacattgccttgatatgttctgccaatcttctaggcaaaaaattaatagagaaaaaactcaggtgtattt |
38112493 |
T |
|
| Q |
236 |
ttccaagaatgttgacaaccatcttcggaaagatattattcaacatacagggtttaatcaggttaacagtttgggtaaatatcttggggcgaatataa |
333 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38112492 |
ttccaagaatgttgacaaccatcttcgggaagatattattcaacatacagggtttaatcaggttaacagtttgggtaaatatcttggggcgaatataa |
38112395 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 136 - 332
Target Start/End: Original strand, 8033911 - 8034107
Alignment:
| Q |
136 |
aagcctccattgaacaggctcattgtgttttacattgctttgatatgttctgccaatcttctgggcaaaaaattaatagagaaaaaagtcaggtgtattt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
8033911 |
aagcctccattgaacaggctcattgtgtattacattgccttgatatgttctgccaatcttctgggcaaaaaattaatagagaaaaaactcaggtgtattt |
8034010 |
T |
|
| Q |
236 |
ttccaagaatgttgacaaccatcttcggaaagatattattcaacatacagggtttaatcaggttaacagtttgggtaaatatcttggggcgaatata |
332 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8034011 |
ttccaagaatgttgacaaccatcttcgggaagatattattcaacatacagggtttaatcaggttaacaatttgggtaaatatcttggggcgaatata |
8034107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 138 - 325
Target Start/End: Complemental strand, 8021659 - 8021472
Alignment:
| Q |
138 |
gcctccattgaacaggctcattgtgttttacattgctttgatatgttctgccaatcttctgggcaaaaaattaatagagaaaaaagtcaggtgtattttt |
237 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||| ||||||| || || ||| | ||||| ||||| || |||||| | |||| | || ||||| | |
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| T |
8021659 |
gcctcaattgaacaggctcattgtgttttgcattgccttgatattttttgtcaagcctctggtcaaaagataaatagaaataaaacttgtgtatatttct |
8021560 |
T |
|
| Q |
238 |
ccaagaatgttgacaaccatcttcggaaagatattattcaacatacagggtttaatcaggttaacagtttgggtaaatatcttggggc |
325 |
Q |
| |
|
||||||||||||| | ||| ||||| | |||||| | || || |||||||||||||||||||| || ||||| | ||||||||||| |
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| T |
8021559 |
ccaagaatgttgatacccaacttcgcgaggatattttacatcacacagggtttaatcaggttaatagcttgggcatgtatcttggggc |
8021472 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 136 - 333
Target Start/End: Original strand, 42864106 - 42864303
Alignment:
| Q |
136 |
aagcctccattgaacaggctcattgtgttttacattgctttgatatgttctgccaatcttctgggcaaaaaattaatagagaaaaaagtcaggtgtattt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42864106 |
aagcctccattgaacaggctcattgtgttttacattgccttgatatgttctgccaatcttctgggcaaaaaattaatagagaaaaaactcaggtgtattt |
42864205 |
T |
|
| Q |
236 |
ttccaagaatgttgacaaccatcttcggaaagatattattcaacatacagggtttaatcaggttaacagtttgggtaaatatcttggggcgaatataa |
333 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42864206 |
ttccaagaatgttgacaaccatcttcgggaagatattattcaacatacagggtttaatcaggttaacagtttgggtaaatatcttggggcgaatataa |
42864303 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 136 - 332
Target Start/End: Original strand, 41998479 - 41998675
Alignment:
| Q |
136 |
aagcctccattgaacaggctcattgtgttttacattgctttgatatgttctgccaatcttctgggcaaaaaattaatagagaaaaaagtcaggtgtattt |
235 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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|
| T |
41998479 |
aagcctccattgaacaggctcattgtgtattacattgccttgatatgttctgccaatcttttgggcaaaaaattaatagagaaaaaactcaggtgtattt |
41998578 |
T |
|
| Q |
236 |
ttccaagaatgttgacaaccatcttcggaaagatattattcaacatacagggtttaatcaggttaacagtttgggtaaatatcttggggcgaatata |
332 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41998579 |
ttccaagaatgttgacaaccatcttctggaagatattattcaacatacagggtttaatcaggttaacagtttgggtaaatatcttggggcgaatata |
41998675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 325
Target Start/End: Complemental strand, 26618640 - 26618453
Alignment:
| Q |
138 |
gcctccattgaacaggctcattgtgttttacattgctttgatatgttctgccaatcttctgggcaaaaaattaatagagaaaaaagtcaggtgtattttt |
237 |
Q |
| |
|
||||| |||||||||| |||||||||||| || |||||||||| || || ||| | ||||| ||||| || |||||| | |||| | || ||||| | |
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|
| T |
26618640 |
gcctcaattgaacaggttcattgtgttttgcactgctttgatactttttgtcaagcctctggtcaaaagataaatagaaataaaacttctgtatatttct |
26618541 |
T |
|
| Q |
238 |
ccaagaatgttgacaaccatcttcggaaagatattattcaacatacagggtttaatcaggttaacagtttgggtaaatatcttggggc |
325 |
Q |
| |
|
||||||||||||| | ||| ||||| | |||||| | || || ||||||||||||||||| || || ||||| | ||||||||||| |
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|
| T |
26618540 |
ccaagaatgttgatacccaacttcgcgaggatattttacatcacacagggtttaatcaggtcaatagcttgggcatgtatcttggggc |
26618453 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 259
Target Start/End: Complemental strand, 10007486 - 10007394
Alignment:
| Q |
168 |
cattgctttgatatgttctgccaatcttctgggcaaaaaattaatagagaaaaaag-tcaggtgtatttttccaagaatgttgacaaccatct |
259 |
Q |
| |
|
|||||| ||||| | ||||||||| |||| |||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
10007486 |
cattgccttgatctcttctgccaaacttcgaagcaaaaaattaatagacaaaaaaactcaggtgtatttttccacgaatgttgacaaccatct |
10007394 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 138 - 325
Target Start/End: Original strand, 23947980 - 23948168
Alignment:
| Q |
138 |
gcctccattgaacaggctcattgtgttttacattgctttgatatgttct-gccaatcttctgggcaaaaaattaatagagaaaaaagtcaggtgtatttt |
236 |
Q |
| |
|
||||| ||||||||||||||||||||||| || ||| ||||||| || | | ||| | ||||| ||||| || |||||| | |||| | || ||||| |
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|
| T |
23947980 |
gcctcaattgaacaggctcattgtgttttgcactgccttgatatttttttgtcaagcctctggtcaaaagataaatagaaataaaacttgtgtatatttc |
23948079 |
T |
|
| Q |
237 |
tccaagaatgttgacaaccatcttcggaaagatattattcaacatacagggtttaatcaggttaacagtttgggtaaatatcttggggc |
325 |
Q |
| |
|
|||||||||||||| | ||| ||||| | |||||| | || || |||||||||||||||||||| || ||||| | ||||||||||| |
|
|
| T |
23948080 |
tccaagaatgttgatacccaacttcgcgaggatattttacatcacacagggtttaatcaggttaatagattgggcatgtatcttggggc |
23948168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 325
Target Start/End: Original strand, 5306999 - 5307186
Alignment:
| Q |
138 |
gcctccattgaacaggctcattgtgttttacattgctttgatatgttctgccaatcttctgggcaaaaaattaatagagaaaaaagtcaggtgtattttt |
237 |
Q |
| |
|
||||| |||||||| |||||||||||||| || ||| ||||||| || || ||| | ||||| ||||| || |||||| | |||| | || ||||| | |
|
|
| T |
5306999 |
gcctcaattgaacatgctcattgtgttttgcactgccttgatattttttgtcaagcctctggtcaaaagataaatagaaataaaacttgtgtatatttct |
5307098 |
T |
|
| Q |
238 |
ccaagaatgttgacaaccatcttcggaaagatattattcaacatacagggtttaatcaggttaacagtttgggtaaatatcttggggc |
325 |
Q |
| |
|
||||||||||||| | ||| |||| | |||||| | || || ||||||||||||||||| || || ||||| | ||||||||||| |
|
|
| T |
5307099 |
ccaagaatgttgatacccaacttcacgaggatattttacatcacacagggtttaatcaggtcaatagcttgggcatgtatcttggggc |
5307186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 249
Target Start/End: Original strand, 46426846 - 46426951
Alignment:
| Q |
144 |
attgaacaggctcattgtgttttacattgctttgatatgttctgccaatcttctgggcaaaaaattaatagagaaaaaagtcaggtgtatttttccaaga |
243 |
Q |
| |
|
||||||||||||||||| || ||||| ||| | |||| || || ||| ||||||| ||||| |||||||| | |||| || |||||||||||||| | |
|
|
| T |
46426846 |
attgaacaggctcattgcgtcttacactgcctggatactttttgtcaagcttctggtcaaaagattaataggaataaaacccatgtgtatttttccaaaa |
46426945 |
T |
|
| Q |
244 |
atgttg |
249 |
Q |
| |
|
|||||| |
|
|
| T |
46426946 |
atgttg |
46426951 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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