View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4049_low_16 (Length: 335)
Name: NF4049_low_16
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4049_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 71 - 315
Target Start/End: Complemental strand, 47338 - 47094
Alignment:
| Q |
71 |
agttttttcactaacgatttatacatagacatatacatctcaattacgtttgaatagaagaaatgtaagtatcaattgaataaatgaaagtatagtaaaa |
170 |
Q |
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| T |
47338 |
agttttttcactaacgatttatacatagacatatacatctcaattacgtttgaatagaagaaatgtaagtatcaattgaataaatgaaagtaaagtaaaa |
47239 |
T |
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| Q |
171 |
caatttcaattgttaaattcttgtcaaaattgatagaataaatataaaaaatgacacttactaatccaccagtgaggtaatgaagaagatagcaagctcc |
270 |
Q |
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| T |
47238 |
caatttcaattgttaaattcttgtcaaaattgatagaatgaatataaaaaatgacacttactaatccaccagtgaggtaatgaagaagatagcaagctcc |
47139 |
T |
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| Q |
271 |
tgcagatgctatatgttgatcgatccaatataagatagaacggac |
315 |
Q |
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| T |
47138 |
tgcagatgctataagttgatcaatccaatataagatagaacggac |
47094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 312
Target Start/End: Complemental strand, 45107 - 45022
Alignment:
| Q |
227 |
cttactaatccaccagtgaggtaatgaagaagatagcaagctcctgcagatgctatatgttgatcgatccaatataagatagaacg |
312 |
Q |
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| T |
45107 |
cttaccaatccaccagagagataatgaagaagataacaagcagctgcagatgctatcaattggtcaatccaatataggatcgaacg |
45022 |
T |
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