View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4049_low_17 (Length: 320)

Name: NF4049_low_17
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4049_low_17
NF4049_low_17
[»] chr7 (12 HSPs)
chr7 (22-311)||(23251490-23251781)
chr7 (149-301)||(23327474-23327628)
chr7 (162-311)||(23259377-23259526)
chr7 (212-304)||(23317193-23317285)
chr7 (198-287)||(22622796-22622885)
chr7 (219-302)||(22625057-22625140)
chr7 (213-301)||(23348065-23348153)
chr7 (225-301)||(23369778-23369853)
chr7 (219-302)||(22633994-22634077)
chr7 (239-298)||(23323076-23323135)
chr7 (212-301)||(23342853-23342942)
chr7 (228-301)||(24138495-24138568)
[»] chr3 (2 HSPs)
chr3 (82-311)||(1157273-1157504)
chr3 (149-311)||(29413013-29413176)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 22 - 311
Target Start/End: Original strand, 23251490 - 23251781
Alignment:
Q  22 ataaccgaattcttcatacttggaacatatgaagtactttatgggctgagagtcatccaaattaattctgagagtgcggcaataatcttccgatgagtta 121  Q
    |||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  23251490 ataatcgagttcttcatacttggaacatatgaagtactttgtgggctgagagtcatcaaaattaattctgagagtgcggcaataatcttccgacgagtta 23251589  T
Q  122 taatttgtcaacaaacccattttttcaacactttgataga--gagttgagacaaccaaatgtaacaggtttgatattcgattctttctgaataagtctag 219  Q
    ||||||||||||||||||||||||||||||||| ||||||  ||||| |||||||||| |||||| |||   ||| | || |||||||||| |||||| |    
T  23251590 taatttgtcaacaaacccattttttcaacacttcgatagagtgagttaagacaaccaattgtaaccggtccaatacttgactctttctgaagaagtcttg 23251689  T
Q  220 caatggttcctaatggtaatgttaagaagctacaaagaatgtcaacaaaatctttatctgcttcagcaaataaaactttgttagtgtctgtg 311  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  23251690 caatggttcctaatggtaatgttaagaagctacatagaatgtccacaaaatctttatctgcttcagcaaataaaactttgttagtgtctgtg 23251781  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 149 - 301
Target Start/End: Original strand, 23327474 - 23327628
Alignment:
Q  149 acactttgatagagag--ttgagacaaccaaatgtaacaggtttgatattcgattctttctgaataagtctagcaatggttcctaatggtaatgttaaga 246  Q
    |||| |||||||||||  ||||||||||||| |||||||||   |||| |||| |||||||| | |||||| ||||| ||||||||||| ||||||||||    
T  23327474 acaccttgatagagagaattgagacaaccaattgtaacaggaccgataatcgactctttctgcagaagtcttgcaattgttcctaatggcaatgttaaga 23327573  T
Q  247 agctacaaagaatgtcaacaaaatctttatctgcttcagcaaataaaactttgtt 301  Q
    ||||||| ||| |||||||||| | ||| ||||| ||||||||||| ||||||||    
T  23327574 agctacacagagtgtcaacaaagtgtttctctgcctcagcaaataagactttgtt 23327628  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 162 - 311
Target Start/End: Original strand, 23259377 - 23259526
Alignment:
Q  162 gagttgagacaaccaaatgtaacaggtttgatattcgattctttctgaataagtctagcaatggttcctaatggtaatgttaagaagctacaaagaatgt 261  Q
    ||||| |||||||||| |||||| |||   ||||| || ||||| |||| |||||| ||||||||| ||||||||||||||||||||||||| |||||||    
T  23259377 gagttaagacaaccaattgtaaccggtccaatatttgactctttatgaagaagtcttgcaatggttgctaatggtaatgttaagaagctacatagaatgt 23259476  T
Q  262 caacaaaatctttatctgcttcagcaaataaaactttgttagtgtctgtg 311  Q
    | ||||| ||||| ||||| || ||||| || |||||||| || ||||||    
T  23259477 ccacaaactctttctctgcctccgcaaacaagactttgtttgtctctgtg 23259526  T

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Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 212 - 304
Target Start/End: Original strand, 23317193 - 23317285
Alignment:
Q  212 aagtctagcaatggttcctaatggtaatgttaagaagctacaaagaatgtcaacaaaatctttatctgcttcagcaaataaaactttgttagt 304  Q
    |||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||||| |||||| |||||    
T  23317193 aagtcttgcaatagttcctaatggtaatgttaagaagctacagagaatgtccacaaaatctttctcagcttcagcaaatacaactttattagt 23317285  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 198 - 287
Target Start/End: Complemental strand, 22622885 - 22622796
Alignment:
Q  198 gattctttctgaataagtctagcaatggttcctaatggtaatgttaagaagctacaaagaatgtcaacaaaatctttatctgcttcagca 287  Q
    ||||| ||||||| |||||||||||||||||||||||| ||||||||||||||| | ||||  |||||||| | ||| ||||||||||||    
T  22622885 gattccttctgaacaagtctagcaatggttcctaatggaaatgttaagaagctaaatagaacatcaacaaagtttttttctgcttcagca 22622796  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 302
Target Start/End: Complemental strand, 22625140 - 22625057
Alignment:
Q  219 gcaatggttcctaatggtaatgttaagaagctacaaagaatgtcaacaaaatctttatctgcttcagcaaataaaactttgtta 302  Q
    |||||||||||||| |||| ||| | ||||||||| |||||||| |||||||| ||  ||||||| |||||||  |||||||||    
T  22625140 gcaatggttcctaaaggtattgtgaggaagctacagagaatgtctacaaaatccttccctgcttctgcaaataggactttgtta 22625057  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 301
Target Start/End: Original strand, 23348065 - 23348153
Alignment:
Q  213 agtctagcaatggttcctaatggtaatgttaagaagctacaaagaatgtcaacaaaatctttatctgcttcagcaaataaaactttgtt 301  Q
    ||||| ||||| ||||||||||| ||||||||||| ||| | ||||  || ||||| |||||  |||||||||||| ||| ||||||||    
T  23348065 agtcttgcaatagttcctaatggcaatgttaagaaactaaatagaacatcgacaaagtctttccctgcttcagcaattaagactttgtt 23348153  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 301
Target Start/End: Original strand, 23369778 - 23369853
Alignment:
Q  225 gttcctaatggtaatgttaagaagctacaaagaatgtcaacaaaatctttatctgcttcagcaaataaaactttgtt 301  Q
    |||||||||||||| |||||||||||||| |||| ||| |||||||||||  |||| || ||||| || ||||||||    
T  23369778 gttcctaatggtaa-gttaagaagctacatagaacgtcgacaaaatctttccctgcctcggcaaacaagactttgtt 23369853  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 219 - 302
Target Start/End: Original strand, 22633994 - 22634077
Alignment:
Q  219 gcaatggttcctaatggtaatgttaagaagctacaaagaatgtcaacaaaatctttatctgcttcagcaaataaaactttgtta 302  Q
    |||||||||||||| || | ||||||||||||||| ||||| || ||||| || ||  ||||||| ||||| || |||||||||    
T  22633994 gcaatggttcctaaaggcattgttaagaagctacagagaatatccacaaagtccttccctgcttctgcaaacaagactttgtta 22634077  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 298
Target Start/End: Original strand, 23323076 - 23323135
Alignment:
Q  239 tgttaagaagctacaaagaatgtcaacaaaatctttatctgcttcagcaaataaaacttt 298  Q
    ||||||||| || || |||||||||||||| |||||  ||||||||||||||| ||||||    
T  23323076 tgttaagaaactgcagagaatgtcaacaaactctttccctgcttcagcaaatacaacttt 23323135  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 301
Target Start/End: Original strand, 23342853 - 23342942
Alignment:
Q  212 aagtctagcaatggttcctaatggtaatgttaagaagctacaaagaatgtcaacaaaatctttatctgcttcagcaaataaaactttgtt 301  Q
    |||||| ||||| |||||||| || ||||||||||||||| | ||||  || ||||| || ||  ||||||||||||| || ||||||||    
T  23342853 aagtcttgcaatagttcctaaaggcaatgttaagaagctaaacagaacatccacaaagtcctttcctgcttcagcaaacaagactttgtt 23342942  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 301
Target Start/End: Original strand, 24138495 - 24138568
Alignment:
Q  228 cctaatggtaatgttaagaagctacaaagaatgtcaacaaaatctttatctgcttcagcaaataaaactttgtt 301  Q
    ||||| |||||||||||||| ||  ||||||  ||||||||||| |||||||| |||| ||| | |||||||||    
T  24138495 cctaagggtaatgttaagaaactcaaaagaacatcaacaaaatccttatctgcctcagtaaacagaactttgtt 24138568  T

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Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 82 - 311
Target Start/End: Original strand, 1157273 - 1157504
Alignment:
Q  82 attaattctgagagtgcggcaataatcttccgatgagttataatttgtcaacaaacccattttttcaacactttgatagag--agttgagacaaccaaat 179  Q
    ||||||| ||||||||| |||||||||||| |||||||||| | | | |||||| || || ||||| ||||||||||||||  ||||||||||||||| |    
T  1157273 attaattttgagagtgctgcaataatcttcggatgagttattaatcggcaacaatccaatattttcgacactttgatagagagagttgagacaaccaatt 1157372  T
Q  180 gtaacaggtttgatattcgattctttctgaataagtctagcaatggttcctaatggtaatgttaagaagctacaaagaatgtcaacaaaatctttatctg 279  Q
    ||||| |||   ||||| || |||||||||| |||||| |||||||| ||||||||||| |||||||||||||| |||||||| |||||||||||  | |    
T  1157373 gtaaccggtcccatatttgaatctttctgaacaagtcttgcaatggtacctaatggtaaggttaagaagctacatagaatgtccacaaaatctttgccgg 1157472  T
Q  280 cttcagcaaataaaactttgttagtgtctgtg 311  Q
    |||||||||||||||||||||| || ||||||    
T  1157473 cttcagcaaataaaactttgttggtttctgtg 1157504  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 149 - 311
Target Start/End: Complemental strand, 29413176 - 29413013
Alignment:
Q  149 acactttgatagagag--ttgagacaaccaaatgtaacaggtttgatattcgattctttctgaataagtctagcaatggttcctaatggtaatgttaaga 246  Q
    ||||||||||||||||  || |||||||||| |||| ||||||| ||||| || |||||||||| |||||| || ||| |||||||||||||||||||||    
T  29413176 acactttgatagagagaatttagacaaccaattgtagcaggttttatatttgactctttctgaagaagtcttgctatg-ttcctaatggtaatgttaaga 29413078  T
Q  247 agctacaaagaatgtcaacaaaatctttatctgcttcagcaaataaaactttgttagtgtctgtg 311  Q
    | | |||||||||||| || ||||||||  ||||||||||||| || |||| ||| || ||||||    
T  29413077 aaccacaaagaatgtccacgaaatctttccctgcttcagcaaacaagacttggttggtctctgtg 29413013  T

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