View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4049_low_18 (Length: 317)

Name: NF4049_low_18
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4049_low_18
NF4049_low_18
[»] chr5 (3 HSPs)
chr5 (12-311)||(15434151-15434447)
chr5 (276-311)||(900885-900920)
chr5 (273-307)||(30839716-30839750)
[»] chr3 (2 HSPs)
chr3 (65-141)||(8184848-8184924)
chr3 (277-311)||(26847794-26847828)
[»] chr7 (3 HSPs)
chr7 (273-311)||(45849546-45849584)
chr7 (275-311)||(38174619-38174655)
chr7 (277-309)||(6494744-6494776)
[»] chr6 (3 HSPs)
chr6 (275-311)||(29396443-29396479)
chr6 (277-311)||(18141383-18141417)
chr6 (281-309)||(21203353-21203381)
[»] chr8 (1 HSPs)
chr8 (276-311)||(24511975-24512010)
[»] chr2 (1 HSPs)
chr2 (273-311)||(33538172-33538210)


Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 12 - 311
Target Start/End: Original strand, 15434151 - 15434447
Alignment:
Q  12 atgaacatttgttaattacttttttcacgactctgctgttttccttgtttttgtatgtcattctgattgttgtaacatattactttgcagctgcattgtg 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  15434151 atgaacatttgttaattacttttttcacgactctgctgttttccttgtttttgtatgtcattctgattgttgtaacata---ctttgcagctgcattgtg 15434247  T
Q  112 cgtactgtcatactttccatttccattaccatgcatactctgctcaggcatgctttctctggttatgtagcgaaacatcgctagacgaaaaattgatcaa 211  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  15434248 tgtactgtcatactttccatttccattaccatgcatactctgctcagggatgctttctgtggttatgtagcgaaacatcgctagacgaaaaattgatcaa 15434347  T
Q  212 ccaccataaatagttgacatgattgtaaaagaaacttgtaacaggttgaaatgccaaatccaatagaggaatgatatgtgaacaaccaaattgtacaacc 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15434348 ccaccataaatagttgacatgattgtaaaagaaacttgtaacaggttgaaatgccaaatccaatagaggaatgatatgtgaacaaccaaattgtacaacc 15434447  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 311
Target Start/End: Original strand, 900885 - 900920
Alignment:
Q  276 agaggaatgatatgtgaacaaccaaattgtacaacc 311  Q
    ||||||||||||||||||||||||||||||||||||    
T  900885 agaggaatgatatgtgaacaaccaaattgtacaacc 900920  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 307
Target Start/End: Original strand, 30839716 - 30839750
Alignment:
Q  273 aatagaggaatgatatgtgaacaaccaaattgtac 307  Q
    ||||||||||||||||||||||||| |||||||||    
T  30839716 aatagaggaatgatatgtgaacaactaaattgtac 30839750  T

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Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 8184924 - 8184848
Alignment:
Q  65 tatgtcattctgattgttgtaacatattactttgcagctgcattgtgcgtactgtcatactttccatttccattacc 141  Q
    ||||||||||||| |||||| |||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||    
T  8184924 tatgtcattctgactgttgtgacatattattttgcagctgcattgtgtgtactgtcacactttccatttccattacc 8184848  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 311
Target Start/End: Complemental strand, 26847828 - 26847794
Alignment:
Q  277 gaggaatgatatgtgaacaaccaaattgtacaacc 311  Q
    |||||||||||||||||||| ||||||||||||||    
T  26847828 gaggaatgatatgtgaacaatcaaattgtacaacc 26847794  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 311
Target Start/End: Complemental strand, 45849584 - 45849546
Alignment:
Q  273 aatagaggaatgatatgtgaacaaccaaattgtacaacc 311  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  45849584 aatagaggaatgatacgtgaacaaccaaattgtacaacc 45849546  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 38174619 - 38174655
Alignment:
Q  275 tagaggaatgatatgtgaacaaccaaattgtacaacc 311  Q
    ||||||||||||| |||||||||||||||||||||||    
T  38174619 tagaggaatgatacgtgaacaaccaaattgtacaacc 38174655  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 277 - 309
Target Start/End: Original strand, 6494744 - 6494776
Alignment:
Q  277 gaggaatgatatgtgaacaaccaaattgtacaa 309  Q
    ||||||||||||||||||||| |||||||||||    
T  6494744 gaggaatgatatgtgaacaacaaaattgtacaa 6494776  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 29396443 - 29396479
Alignment:
Q  275 tagaggaatgatatgtgaacaaccaaattgtacaacc 311  Q
    ||||||||||||||||||||| |||||||||||||||    
T  29396443 tagaggaatgatatgtgaacagccaaattgtacaacc 29396479  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 311
Target Start/End: Original strand, 18141383 - 18141417
Alignment:
Q  277 gaggaatgatatgtgaacaaccaaattgtacaacc 311  Q
    |||||||||||||||||||||||||| ||||||||    
T  18141383 gaggaatgatatgtgaacaaccaaatcgtacaacc 18141417  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 281 - 309
Target Start/End: Complemental strand, 21203381 - 21203353
Alignment:
Q  281 aatgatatgtgaacaaccaaattgtacaa 309  Q
    |||||||||||||||||||||||||||||    
T  21203381 aatgatatgtgaacaaccaaattgtacaa 21203353  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 276 - 311
Target Start/End: Original strand, 24511975 - 24512010
Alignment:
Q  276 agaggaatgatatgtgaacaaccaaattgtacaacc 311  Q
    ||||||||||||| ||||||||||||||||||||||    
T  24511975 agaggaatgatatctgaacaaccaaattgtacaacc 24512010  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 311
Target Start/End: Original strand, 33538172 - 33538210
Alignment:
Q  273 aatagaggaatgatatgtgaacaaccaaattgtacaacc 311  Q
    ||||||||||||||||||||| || ||||||||||||||    
T  33538172 aatagaggaatgatatgtgaaaaatcaaattgtacaacc 33538210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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