View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4049_low_24 (Length: 263)

Name: NF4049_low_24
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4049_low_24
NF4049_low_24
[»] chr4 (19 HSPs)
chr4 (1-233)||(26355074-26355294)
chr4 (164-217)||(39232801-39232854)
chr4 (164-229)||(4206206-4206272)
chr4 (164-229)||(4206886-4206952)
chr4 (164-229)||(39232103-39232169)
chr4 (164-229)||(51539821-51539887)
chr4 (164-229)||(51540508-51540574)
chr4 (166-230)||(29379724-29379789)
chr4 (166-229)||(2520306-2520370)
chr4 (166-229)||(2519559-2519622)
chr4 (164-229)||(49603417-49603483)
chr4 (164-229)||(49604095-49604161)
chr4 (166-229)||(29380473-29380537)
chr4 (168-217)||(46513686-46513736)
chr4 (166-222)||(14090722-14090778)
chr4 (167-211)||(2528689-2528733)
chr4 (185-227)||(25699311-25699353)
chr4 (187-219)||(441328-441360)
chr4 (164-219)||(47594188-47594244)
[»] chr8 (14 HSPs)
chr8 (164-229)||(28824803-28824868)
chr8 (164-229)||(28824124-28824190)
chr8 (164-229)||(29555507-29555573)
chr8 (164-229)||(29556193-29556259)
chr8 (164-229)||(38376206-38376272)
chr8 (164-229)||(44445967-44446033)
chr8 (166-230)||(39774315-39774380)
chr8 (166-229)||(5157230-5157294)
chr8 (164-229)||(5156551-5156617)
chr8 (164-229)||(44446645-44446711)
chr8 (164-209)||(38376912-38376957)
chr8 (166-229)||(5157974-5158038)
chr8 (166-229)||(39773567-39773631)
chr8 (166-217)||(14857949-14858001)
[»] chr7 (14 HSPs)
chr7 (164-229)||(47942011-47942076)
chr7 (164-229)||(33256407-33256472)
chr7 (164-225)||(22377353-22377415)
chr7 (164-229)||(33255720-33255786)
chr7 (164-229)||(47942689-47942755)
chr7 (164-229)||(47948119-47948185)
chr7 (166-230)||(7331861-7331926)
chr7 (166-229)||(7331113-7331177)
chr7 (166-217)||(34151599-34151651)
chr7 (166-217)||(34175473-34175525)
chr7 (166-229)||(16959596-16959658)
chr7 (166-217)||(31724186-31724238)
chr7 (166-229)||(16941089-16941151)
chr7 (185-229)||(48843199-48843244)
[»] chr5 (13 HSPs)
chr5 (164-229)||(2600832-2600897)
chr5 (164-229)||(2601518-2601583)
chr5 (164-229)||(4275564-4275630)
chr5 (164-229)||(4276250-4276316)
chr5 (164-229)||(31230116-31230182)
chr5 (166-230)||(3341587-3341652)
chr5 (166-230)||(3358496-3358561)
chr5 (164-229)||(31229429-31229495)
chr5 (166-230)||(3342335-3342400)
chr5 (166-230)||(3359244-3359309)
chr5 (166-229)||(11377286-11377349)
chr5 (166-217)||(11376943-11376995)
chr5 (171-222)||(5233770-5233822)
[»] chr3 (13 HSPs)
chr3 (164-229)||(47861776-47861841)
chr3 (164-222)||(30733610-30733669)
chr3 (164-229)||(11503677-11503743)
chr3 (164-229)||(47862462-47862528)
chr3 (164-229)||(48222324-48222390)
chr3 (164-229)||(48223004-48223070)
chr3 (166-229)||(6588547-6588610)
chr3 (167-229)||(53302951-53303014)
chr3 (167-229)||(1194099-1194162)
chr3 (164-229)||(11504363-11504429)
chr3 (183-229)||(53303635-53303681)
chr3 (164-232)||(16073637-16073704)
chr3 (183-217)||(25749094-25749128)
[»] chr1 (19 HSPs)
chr1 (164-229)||(250362-250427)
chr1 (164-229)||(11625286-11625351)
chr1 (166-230)||(35813295-35813359)
chr1 (164-229)||(36180409-36180475)
chr1 (164-229)||(47708508-47708574)
chr1 (166-230)||(9088439-9088504)
chr1 (164-229)||(36179716-36179781)
chr1 (166-230)||(45881505-45881570)
chr1 (166-229)||(35814029-35814093)
chr1 (166-229)||(45880757-45880821)
chr1 (164-229)||(249682-249748)
chr1 (164-217)||(11625984-11626038)
chr1 (166-222)||(9087691-9087748)
chr1 (166-230)||(32516812-32516877)
chr1 (185-229)||(32517561-32517605)
chr1 (168-222)||(27039101-27039155)
chr1 (164-217)||(51588632-51588684)
chr1 (171-222)||(42308902-42308954)
chr1 (166-217)||(51590774-51590826)
[»] chr6 (13 HSPs)
chr6 (164-229)||(304973-305039)
chr6 (164-229)||(305646-305712)
chr6 (164-229)||(644100-644166)
chr6 (164-229)||(33775568-33775634)
chr6 (164-229)||(22509755-22509819)
chr6 (166-238)||(23950041-23950114)
chr6 (167-229)||(33776247-33776310)
chr6 (164-229)||(644779-644845)
chr6 (166-229)||(26275430-26275494)
chr6 (167-229)||(19803381-19803444)
chr6 (164-220)||(8208111-8208167)
chr6 (183-229)||(26276178-26276224)
chr6 (183-229)||(23949148-23949193)
[»] chr2 (11 HSPs)
chr2 (164-229)||(1389085-1389151)
chr2 (164-229)||(22424720-22424786)
chr2 (166-230)||(21647602-21647667)
chr2 (166-229)||(29982153-29982217)
chr2 (166-229)||(29982902-29982966)
chr2 (166-229)||(37644407-37644471)
chr2 (164-229)||(22424033-22424099)
chr2 (166-227)||(37645158-37645220)
chr2 (166-230)||(21648350-21648415)
chr2 (166-230)||(15321814-15321880)
chr2 (166-217)||(15167824-15167876)
[»] scaffold0181 (2 HSPs)
scaffold0181 (168-230)||(18059-18122)
scaffold0181 (166-229)||(17311-17375)


Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 26355074 - 26355294
Alignment:
Q  1 cgattcgcgaaggaagtggaagccactctcgccgctgatttacagaacgaagaagccattgctgaagaaggttactgattcgaatagtgaacaccgctgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||| |    
T  26355074 cgattcgcgaaggaagtggaagccactctcgccgctgatttacagaacgaagaagccattgctgaagaaggttactgatt-------------ccgctag 26355160  T
Q  101 tgcctggcttgaaccctaaactcaactgttattgggcttgctcaatttatcacac-nnnnnnnnaagattgctttttaggcctcccaatatctctttagg 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||| ||||||    
T  26355161 tgcctggcttgaaccctaaactcaactgttattgggcttgctcaatttatcacacactttttttaagattgctttttaggcctcccaatatctgtttagg 26355260  T
Q  200 ccccctaaaaatacaaaattaacttttatacttt 233  Q
    |||||||| |||||||||||||||||||||||||    
T  26355261 ccccctaataatacaaaattaacttttatacttt 26355294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 39232854 - 39232801
Alignment:
Q  164 aagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaa 217  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39232854 aagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaa 39232801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 4206206 - 4206272
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  4206206 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 4206272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 4206952 - 4206886
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  4206952 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 4206886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 39232103 - 39232169
Alignment:
Q  164 aagattgctttttaggcctc-ccaatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||| ||||||    
T  39232103 aagattgctttttaggcccctccaatatctctttaggccccctaaaaatacaaaaataacctttata 39232169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 51539821 - 51539887
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  51539821 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 51539887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 51540574 - 51540508
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  51540574 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 51540508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 29379724 - 29379789
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttatac 230  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||    
T  29379724 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttatac 29379789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 2520370 - 2520306
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| ||||||    
T  2520370 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttata 2520306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 2519559 - 2519622
Alignment:
Q  166 gattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||||||||| |||| ||||||    
T  2519559 gattgctttttaggccctccaatatctctttaggccccttaaaaatacaaaaataacctttata 2519622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 49603417 - 49603483
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||| |||||||||||| ||||||||||||||||||| |||| ||||||    
T  49603417 aagattgctttttaggcccccccaatatctctttaagccccctaaaaatacaaaaataacctttata 49603483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 49604161 - 49604095
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||| ||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  49604161 aagattgcttttcaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 49604095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 29380537 - 29380473
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||| || ||||||||||||||| ||||||||||||||||| |||| ||||||    
T  29380537 gattgctttttaggccccctcaatatctctttaggtcccctaaaaatacaaaaataacctttata 29380473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 46513736 - 46513686
Alignment:
Q  168 ttgctttttaggcctcccaa-tatctctttaggccccctaaaaatacaaaa 217  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  46513736 ttgctttttaggccccccaaatatctctttaggccccctaaaaatacaaaa 46513686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 14090722 - 14090778
Alignment:
Q  166 gattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaac 222  Q
    |||||||||||||| |||||||||||| ||||||||||| |||||||| ||| ||||    
T  14090722 gattgctttttaggtctcccaatatctatttaggcccccaaaaaatacgaaaataac 14090778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 2528733 - 2528689
Alignment:
Q  167 attgctttttaggcctcccaatatctctttaggccccctaaaaat 211  Q
    ||||||||||||||| || |||||||||||||| |||||||||||    
T  2528733 attgctttttaggccccctaatatctctttaggtcccctaaaaat 2528689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 25699311 - 25699353
Alignment:
Q  185 caatatctctttaggccccctaaaaatacaaaattaactttta 227  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||    
T  25699311 caatatctctttaggccccctaaaaatacgaaaataaccttta 25699353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 441328 - 441360
Alignment:
Q  187 atatctctttaggccccctaaaaatacaaaatt 219  Q
    ||||||||||||||||||||||| |||||||||    
T  441328 atatctctttaggccccctaaaattacaaaatt 441360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 47594244 - 47594188
Alignment:
Q  164 aagattgctttttaggcctccca-atatctctttaggccccctaaaaatacaaaatt 219  Q
    |||||| |||||||||||||||  || |||||||||||||||||||| || ||||||    
T  47594244 aagattcctttttaggcctccctcatgtctctttaggccccctaaaattataaaatt 47594188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 28824868 - 28824803
Alignment:
Q  164 aagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||    
T  28824868 aagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 28824803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 28824124 - 28824190
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  28824124 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 28824190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 29555507 - 29555573
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  29555507 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 29555573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 29556259 - 29556193
Alignment:
Q  164 aagattgctttttagg-cctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| ||||||    
T  29556259 aagattgctttttaggtccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 29556193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 38376206 - 38376272
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  38376206 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 38376272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 44445967 - 44446033
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  44445967 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 44446033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 39774380 - 39774315
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttatac 230  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||    
T  39774380 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttatac 39774315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 5157294 - 5157230
Alignment:
Q  166 gattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  5157294 gattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 5157230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 5156551 - 5156617
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||| ||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  5156551 aagatttctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 5156617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 44446711 - 44446645
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||| ||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  44446711 aagattgcttttcaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 44446645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 38376957 - 38376912
Alignment:
Q  164 aagattgctttttaggcctcccaatatctctttaggccccctaaaa 209  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  38376957 aagattgctttttaggccccccaatatctctttaggccccctaaaa 38376912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 5158038 - 5157974
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||| || ||||||||||||||||| ||||||||||||||| |||| ||||||    
T  5158038 gattgctttttaggccccctcaatatctctttaggcctcctaaaaatacaaaaataacctttata 5157974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 39773567 - 39773631
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||| || ||||||||||||||||||||||||||| ||||| |||| ||||||    
T  39773567 gattgctttttaggccccctcaatatctctttaggccccctaaaaattcaaaaataacctttata 39773631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 14858001 - 14857949
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaa 217  Q
    |||||||||||||||| || |||||||||||||||||||||||| ||||||||    
T  14858001 gattgctttttaggccccctcaatatctctttaggccccctaaagatacaaaa 14857949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 47942011 - 47942076
Alignment:
Q  164 aagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||    
T  47942011 aagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 47942076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 33256472 - 33256407
Alignment:
Q  164 aagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||| ||||||    
T  33256472 aagattgctttttaggccccccaatatctctttaggccccctaaaagtacaaaaataacctttata 33256407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 22377415 - 22377353
Alignment:
Q  164 aagattgctttttaggcctc-ccaatatctctttaggccccctaaaaatacaaaattaacttt 225  Q
    |||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||    
T  22377415 aagattgctttttaggcccctccagtatctctttaggccccctaaaaatacaaaattaacttt 22377353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 33255720 - 33255786
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  33255720 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 33255786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 47942755 - 47942689
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  47942755 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 47942689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 47948185 - 47948119
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  47948185 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 47948119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 7331926 - 7331861
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttatac 230  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||    
T  7331926 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttatac 7331861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 7331113 - 7331177
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| ||||||    
T  7331113 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttata 7331177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 34151599 - 34151651
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaa 217  Q
    |||||||||||||||| || |||||||||||||||||||||||| ||||||||    
T  34151599 gattgctttttaggccccctcaatatctctttaggccccctaaagatacaaaa 34151651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 34175525 - 34175473
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaa 217  Q
    |||||||||||||||| || |||||||||||||||||||||||| ||||||||    
T  34175525 gattgctttttaggccccctcaatatctctttaggccccctaaagatacaaaa 34175473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 16959658 - 16959596
Alignment:
Q  166 gattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||| ||| |||||||||||||||||| |||||||||||  ||| |||||||||||    
T  16959658 gattgctttttacgcc-cccaatatctctttaggctccctaaaaatatgaaaataacttttata 16959596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 31724238 - 31724186
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaa 217  Q
    |||||||||||||||| || |||||||| |||||||||| |||||||||||||    
T  31724238 gattgctttttaggccccctcaatatctatttaggccccttaaaaatacaaaa 31724186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 16941151 - 16941089
Alignment:
Q  166 gattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||| ||| |||| ||||||||||||| |||||||||||  ||| |||||||||||    
T  16941151 gattgctttttacgcc-cccagtatctctttaggctccctaaaaatatgaaaataacttttata 16941089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 48843199 - 48843244
Alignment:
Q  185 caatatctctttaggccccctaaaaatac-aaaattaacttttata 229  Q
    ||||||||||||||||||||||||||||| |||| |||| ||||||    
T  48843199 caatatctctttaggccccctaaaaatacgaaaaataacctttata 48843244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 2600832 - 2600897
Alignment:
Q  164 aagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||    
T  2600832 aagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 2600897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 2601583 - 2601518
Alignment:
Q  164 aagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| ||||||    
T  2601583 aagattgctttttaggccccccaatatctctttaggcctcctaaaaatacaaaaataacctttata 2601518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 4275564 - 4275630
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  4275564 aagattgctttttaggcccccctaatatctctttaggccccctaaaaatacaaaaataacctttata 4275630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 4276316 - 4276250
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  4276316 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 4276250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 31230182 - 31230116
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  31230182 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 31230116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 3341587 - 3341652
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttatac 230  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||    
T  3341587 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttatac 3341652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 3358496 - 3358561
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttatac 230  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||    
T  3358496 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttatac 3358561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 31229429 - 31229495
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||| ||||||| |||| ||||||    
T  31229429 aagattgctttttaggcccccccaatatctctttaggccccctaaaagtacaaaaataacctttata 31229495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 3342400 - 3342335
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttatac 230  Q
    |||||||||||||||| || |||||||||||||| |||||||||||||||||| |||| |||||||    
T  3342400 gattgctttttaggccccctcaatatctctttagaccccctaaaaatacaaaaataacctttatac 3342335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 3359309 - 3359244
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttatac 230  Q
    |||||||||||||||| || |||||||||||||| |||||||||||||||||| |||| |||||||    
T  3359309 gattgctttttaggccccctcaatatctctttagaccccctaaaaatacaaaaataacctttatac 3359244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 11377286 - 11377349
Alignment:
Q  166 gattgctttttaggcctcccaatatctctttaggccccctaaaaatac-aaaattaacttttata 229  Q
    |||||||||||||||| |||||||||||||| | |||||||||||||| |||| |||||||||||    
T  11377286 gattgctttttaggcc-cccaatatctctttggtccccctaaaaatacaaaaaataacttttata 11377349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 11376943 - 11376995
Alignment:
Q  166 gattgctttttaggcctcccaatatctctttag-gccccctaaaaatacaaaa 217  Q
    |||||||||||||||| |||||||||||||| |  ||||||||||||||||||    
T  11376943 gattgctttttaggccccccaatatctctttggtcccccctaaaaatacaaaa 11376995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 5233770 - 5233822
Alignment:
Q  171 ctttttaggcctc-ccaatatctctttaggccccctaaaaatacaaaattaac 222  Q
    ||||||||||| | ||||||||| ||||||||| |||||||||||||| ||||    
T  5233770 ctttttaggcccctccaatatctttttaggccctctaaaaatacaaaaataac 5233822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 47861776 - 47861841
Alignment:
Q  164 aagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||    
T  47861776 aagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 47861841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 30733610 - 30733669
Alignment:
Q  164 aagattgctttttaggcctc-ccaatatctctttaggccccctaaaaatacaaaattaac 222  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  30733610 aagattgctttttaggcccctccaatatctctttaggccccctaaaaatacaaaattaac 30733669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 11503677 - 11503743
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  11503677 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 11503743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 47862528 - 47862462
Alignment:
Q  164 aagattgctttttaggcctc-ccaatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||| ||||||    
T  47862528 aagattgctttttaggcccctccaatatctctttaggccccctaaaaatacaaaaataacctttata 47862462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 48222324 - 48222390
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  48222324 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 48222390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 48223070 - 48223004
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  48223070 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 48223004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 6588547 - 6588610
Alignment:
Q  166 gattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    ||||||||||||| || | ||||||||||||||||||||||||||||||||| |||| ||||||    
T  6588547 gattgctttttagccccctcaatatctctttaggccccctaaaaatacaaaaataacctttata 6588610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 53302951 - 53303014
Alignment:
Q  167 attgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  53302951 attgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 53303014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 1194099 - 1194162
Alignment:
Q  167 attgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    ||||||||||||||| || |||||||||||||||||||| |||||||||||| |||| ||||||    
T  1194099 attgctttttaggccccctcaatatctctttaggccccccaaaaatacaaaaataacctttata 1194162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 11504429 - 11504363
Alignment:
Q  164 aagattgctttttaggc-ctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    ||||||||||||||||| | |||||||||| |||||||||| ||||||||||||| |||| ||||||    
T  11504429 aagattgctttttaggctcccccaatatctttttaggccccttaaaaatacaaaaataacctttata 11504363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 53303681 - 53303635
Alignment:
Q  183 cccaatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||    
T  53303681 cccaatatctctttaggccccctaaaaatacaaaaataacctttata 53303635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 16073637 - 16073704
Alignment:
Q  164 aagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttatactt 232  Q
    |||||||||||| ||||| || ||||||||||| ||||||| ||||||||||||||||| ||| |||||    
T  16073637 aagattgctttt-aggcccccaaatatctctttgggccccccaaaaatacaaaattaacctttgtactt 16073704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Complemental strand, 25749128 - 25749094
Alignment:
Q  183 cccaatatctctttaggccccctaaaaatacaaaa 217  Q
    |||||||||| ||||||||||||||||||||||||    
T  25749128 cccaatatctttttaggccccctaaaaatacaaaa 25749094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 250427 - 250362
Alignment:
Q  164 aagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||    
T  250427 aagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 250362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 11625286 - 11625351
Alignment:
Q  164 aagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||    
T  11625286 aagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacatttata 11625351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 35813295 - 35813359
Alignment:
Q  166 gattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttatac 230  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||| |||| |||||||    
T  35813295 gattgctttttaggcccctcaatatctctttaggccccctaaaaatacaaaaataacctttatac 35813359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 36180475 - 36180409
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  36180475 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 36180409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 47708574 - 47708508
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  47708574 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 47708508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 9088504 - 9088439
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttatac 230  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||    
T  9088504 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttatac 9088439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 36179716 - 36179781
Alignment:
Q  164 aagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||| | ||||||||||||||||||| ||||||||||||||| |||| ||||||    
T  36179716 aagattgctttttaggtcccccaatatctctttaggcctcctaaaaatacaaaaataacctttata 36179781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 45881570 - 45881505
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttatac 230  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||    
T  45881570 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttatac 45881505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 35814093 - 35814029
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| ||||||    
T  35814093 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttata 35814029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 45880757 - 45880821
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| ||||||    
T  45880757 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttata 45880821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 249682 - 249748
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||| ||||||||||||| |||||||||||||||||| |||| ||||||    
T  249682 aagattgctttttaggcccccccaatatctctttagaccccctaaaaatacaaaaataacctttata 249748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 11626038 - 11625984
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaa 217  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  11626038 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaa 11625984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 9087691 - 9087748
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaac 222  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||    
T  9087691 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataac 9087748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 32516812 - 32516877
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttatac 230  Q
    |||||||||||||||| || ||||||||||||| | ||||||||||||||||| |||| |||||||    
T  32516812 gattgctttttaggccccctcaatatctctttaagtcccctaaaaatacaaaaataacctttatac 32516877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 32517605 - 32517561
Alignment:
Q  185 caatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||    
T  32517605 caatatctctttaggccccctaaaaatacaaaaataacctttata 32517561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 27039155 - 27039101
Alignment:
Q  168 ttgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaac 222  Q
    ||||| |||||||| |||||||||| |||| ||||||||||||||| ||||||||    
T  27039155 ttgctctttaggccccccaatatctttttaagccccctaaaaatacgaaattaac 27039101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 51588632 - 51588684
Alignment:
Q  164 aagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaa 217  Q
    ||||||||||||||||| || ||||||||||| ||||||||||||  |||||||    
T  51588632 aagattgctttttaggc-tctcaatatctcttcaggccccctaaagttacaaaa 51588684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 42308954 - 42308902
Alignment:
Q  171 ctttttaggcctc-ccaatatctctttaggccccctaaaaatacaaaattaac 222  Q
    ||||||||||| | ||||||||| |||||||| ||||||||||||||| ||||    
T  42308954 ctttttaggcccctccaatatctttttaggcctcctaaaaatacaaaaataac 42308902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 51590826 - 51590774
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaa 217  Q
    ||||||||||||| || || |||||||||||||||| |||||||| |||||||    
T  51590826 gattgctttttagacccccacaatatctctttaggcaccctaaaactacaaaa 51590774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 304973 - 305039
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  304973 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 305039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 305712 - 305646
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  305712 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 305646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 644100 - 644166
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  644100 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 644166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 33775568 - 33775634
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  33775568 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 33775634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 22509755 - 22509819
Alignment:
Q  164 aagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||| ||||||    
T  22509755 aagattgctttttaggcc-cccaatatctctttagaccccctaaaaatacaaaaataacgtttata 22509819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 23950114 - 23950041
Alignment:
Q  166 gattgctttttaggcctc-ccaatatctctttaggccccctaaaaatacaaaattaacttttatactttaaaac 238  Q
    |||||||||||||||  | ||||||||||||||||||||||||||||||||||||||| |||||| || |||||    
T  23950114 gattgctttttaggctcctccaatatctctttaggccccctaaaaatacaaaattaacctttataattaaaaac 23950041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 33776310 - 33776247
Alignment:
Q  167 attgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  33776310 attgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 33776247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 644845 - 644779
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    ||||||||||||||| || ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  644845 aagattgctttttagacccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 644779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 26275430 - 26275494
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||| || |||||||||||||||||| |||||||||||||| |||| ||||||    
T  26275430 gattgctttttaggccccctcaatatctctttaggccctctaaaaatacaaaaataacctttata 26275494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 19803381 - 19803444
Alignment:
Q  167 attgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    ||||||||||||||| || ||||||||||||||||||||| ||||||||||| |||| ||||||    
T  19803381 attgctttttaggccccctcaatatctctttaggccccctgaaaatacaaaaataacctttata 19803444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 8208111 - 8208167
Alignment:
Q  164 aagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaatta 220  Q
    |||||||||||||||||| |||| | ||||||||||| |||||||||| ||||||||    
T  8208111 aagattgctttttaggccccccagtttctctttaggctccctaaaaatccaaaatta 8208167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 26276224 - 26276178
Alignment:
Q  183 cccaatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    ||||||||||||||||| ||||||||||||||||| |||| ||||||    
T  26276224 cccaatatctctttaggtcccctaaaaatacaaaaataacctttata 26276178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 23949148 - 23949193
Alignment:
Q  183 cccaatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||| |||| |||||||||||||||||| ||||||    
T  23949148 cccaatatctctttag-ccccttaaaaatacaaaattaacctttata 23949193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 1389151 - 1389085
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  1389151 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 1389085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 22424786 - 22424720
Alignment:
Q  164 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  22424786 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 22424720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 21647602 - 21647667
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttatac 230  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||    
T  21647602 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttatac 21647667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 29982153 - 29982217
Alignment:
Q  166 gattgctttttaggcc-tcccaatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| ||||||    
T  29982153 gattgctttttaggccctctcaatatctctttaggccccctaaaaatacaaaaataacctttata 29982217  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 229
Target Start/End: Complemental strand, 29982966 - 29982902
Alignment:
Q  166 gattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  29982966 gattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 29982902  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 37644407 - 37644471
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| ||||||    
T  37644407 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttata 37644471  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 22424033 - 22424099
Alignment:
Q  164 aagattgctttttaggc-ctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    ||||||||||||||||| | ||||||||||||||||||||| ||||||||||||| |||| ||||||    
T  22424033 aagattgctttttaggctcccccaatatctctttaggccccttaaaaatacaaaaataacctttata 22424099  T

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Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 227
Target Start/End: Complemental strand, 37645220 - 37645158
Alignment:
Q  166 gattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaactttta 227  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||    
T  37645220 gattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataaccttta 37645158  T

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Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 21648415 - 21648350
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttatac 230  Q
    |||||||||||||||| || |||||||||||||| |||||||||||||||||| |||| |||||||    
T  21648415 gattgctttttaggccccctcaatatctctttagaccccctaaaaatacaaaaataacctttatac 21648350  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 15321814 - 15321880
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaat-acaaaattaacttttatac 230  Q
    |||||||||||| ||| || ||||||||||||||||||||||||||| |||||| |||| |||||||    
T  15321814 gattgctttttaagccccctcaatatctctttaggccccctaaaaataacaaaaataacctttatac 15321880  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 15167876 - 15167824
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaa 217  Q
    ||||||||||||| || || |||||||||||||||||||||||| ||||||||    
T  15167876 gattgctttttagaccccctcaatatctctttaggccccctaaagatacaaaa 15167824  T

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Target: scaffold0181 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 18122 - 18059
Alignment:
Q  168 ttgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttatac 230  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||    
T  18122 ttgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttatac 18059  T

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Target: scaffold0181; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 229
Target Start/End: Original strand, 17311 - 17375
Alignment:
Q  166 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttata 229  Q
    |||||||||||||||| || |||||| ||||||||||||||||||||| |||| |||| ||||||    
T  17311 gattgctttttaggccccctcaatatttctttaggccccctaaaaatataaaaataacctttata 17375  T

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