View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4049_low_25 (Length: 259)
Name: NF4049_low_25
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4049_low_25 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 259
Target Start/End: Complemental strand, 4347901 - 4347653
Alignment:
| Q |
11 |
cacagatcattaagaaaacaaatgcagcactgtccgaataggatgatgaaaatgaattgtaaatgccaagactcttcgagtgcttgatagaattgtgtcc |
110 |
Q |
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| T |
4347901 |
cacaggtcattaagaaaacaaatgcagcactcccccaataggatgatgaaaatgaattgtgaatgccaggactctttgagtgcttgatagaattgtgtcc |
4347802 |
T |
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| Q |
111 |
aattatgagaaaagtttaagcaacaacaagagcacaagctnnnnnnnctgctcacagagaatttttaattaagggtataacactgaatacttgcattacc |
210 |
Q |
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| T |
4347801 |
aatcatgagaaaagtttaagcaacaacaagagcacatgctgaaaaaactgctcacagagaatttttaattaagggtataacactgaatacttgcattacc |
4347702 |
T |
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| Q |
211 |
gacaaactataggagcagggtaatatgcaagctttgatattgaggctgc |
259 |
Q |
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| T |
4347701 |
aacaaactataggagcagggtaatatgcaaggtttgatattgaggctgc |
4347653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 4364199 - 4364154
Alignment:
| Q |
90 |
gtgcttgatagaattgtgtccaattatgagaaaagtttaagcaaca |
135 |
Q |
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| T |
4364199 |
gtgcttgatagatttgtgtccaaccatgagaaaagtttaagcaaca |
4364154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 4364290 - 4364236
Alignment:
| Q |
12 |
acagatcattaagaaaacaaatgcagcactgtccgaataggatgatgaaaatgaa |
66 |
Q |
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| T |
4364290 |
acaggtcattaagaaaacaaattcagtactttcccaataggttgatgaaaatgaa |
4364236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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