View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4049_low_28 (Length: 252)
Name: NF4049_low_28
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4049_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 4338150 - 4338384
Alignment:
| Q |
1 |
ttgccttgcttgtgggtttacctgtggcttggtttggaactgttggggcacaatctgagcctgctaagaggattgtttgtgctgcttctagtggtgttct |
100 |
Q |
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| T |
4338150 |
ttgccttgcttgtggggttacctgtggcttggtttggaactgttggggcacaatatgagcctgctaagaggattgtttgtgctgcttctagtggtgttct |
4338249 |
T |
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| Q |
101 |
ggctgttacttttgcggttgttaggatgtatcttggttgggcttatgttgggaatcgtttgctcagtgctactgttgaatgtaatgtgtattttctctct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4338250 |
ggctgttacttttgcggttgttaggatgtatcttggttgggcttatgttgggaatcgtttgctcagtgctactgttgaatgtaatgtgtattttctctct |
4338349 |
T |
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| Q |
201 |
actttttaatcttatgtctaagattataatttata |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
4338350 |
actttttaatcttatgtctaagattataatttata |
4338384 |
T |
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