View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4049_low_29 (Length: 250)
Name: NF4049_low_29
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4049_low_29 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 36711799 - 36711560
Alignment:
| Q |
11 |
cagagaaggacaaatatcaaagtatgattatgttgatgaagcacaaaatttacaacactatggacaaagggttcctccaacttatgacgtgaccaaaatc |
110 |
Q |
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| T |
36711799 |
cagaaaaggacaaatatcaaagtatgattatgttgatgaagcacaaaatttacaacactatggacaaagggttcctccaacttatgacgtgaccaaaatc |
36711700 |
T |
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| Q |
111 |
cctagtgaattccccctttttctcagctatggagggaaagatactctatctgatgtacaagatgtgaaggttttgttcaatgacctcaataatgaccatg |
210 |
Q |
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| T |
36711699 |
cctagtgaattccccctttttctcagctatggagggaaagatactctatctgatgtacaagatgtgaaggttttgttcaatgaactcaataatgaccatg |
36711600 |
T |
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| Q |
211 |
atcctagcaaccgtgtggtattgttcaaggatgattatgc |
250 |
Q |
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| T |
36711599 |
atgctagcaaccgtgtggtattgtttaaggatgattatgc |
36711560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 36704643 - 36704413
Alignment:
| Q |
17 |
aggacaaatatcaaagtatgattatgttgatgaagcacaaaatttacaacactatggacaaagggttcctccaacttatgacgtgaccaaaatccctagt |
116 |
Q |
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| T |
36704643 |
aggaaaaatagcaaagtatgattatgttaatgcagcacaaaatatacaacactatggacaaagggttcctccaacatatgacatgacaaaaatctcaagt |
36704544 |
T |
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| Q |
117 |
gaattccccctttttctcagctatggagggaaagatactctatctgatgtacaagatgtgaaggttttgttcaatgacctcaataatgaccatgatccta |
216 |
Q |
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| T |
36704543 |
gaattcccactttttcttggctatggagggaatgattttttatctgatgtacaagatgtgaaggttttgctcaatgatctcagtgat---caagatgcta |
36704447 |
T |
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| Q |
217 |
gcaaccgtgtggtattgttcaaggatgattatgc |
250 |
Q |
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| T |
36704446 |
acaagcgcgtggtattgttcaaggatgattatgc |
36704413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 36664658 - 36664829
Alignment:
| Q |
28 |
caaagtatgattatgttgatgaagcacaaaatttacaacactatggacaaagggttcctccaacttatgacgtgaccaaaatccctagtgaattccccct |
127 |
Q |
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| T |
36664658 |
caaagtatgattatgttcatcaagcacaaaatctactacactatggacatcgaactcctccaacttatgacttgaccaaaatccctaccgagttccctct |
36664757 |
T |
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| Q |
128 |
ttttctcagctatggagggaaagatactctatctgatgtacaagatgtgaaggttttgttcaatgacctcaa |
199 |
Q |
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| T |
36664758 |
ttttctaggtgttggagggcaagatatgttatctgacgtacaggatgtgaatcttttgcttaatgacctcaa |
36664829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 36677488 - 36677440
Alignment:
| Q |
28 |
caaagtatgattatgttgatgaagcacaaaatttacaacactatggaca |
76 |
Q |
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| T |
36677488 |
caaagtatgattatgttcatcaagcacaaaatctactacactatggaca |
36677440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 36687570 - 36687522
Alignment:
| Q |
28 |
caaagtatgattatgttgatgaagcacaaaatttacaacactatggaca |
76 |
Q |
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| T |
36687570 |
caaagtatgattatgttcatcaagcacaaaatctactacactatggaca |
36687522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 30905522 - 30905702
Alignment:
| Q |
17 |
aggacaaatatcaaagtatgattatgttgatgaagcacaaaatttacaacactatggacaaagggttcctccaacttatgacgtgaccaaaatccctagt |
116 |
Q |
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| T |
30905522 |
aggaaaaatagcaaagtatgattatgttgatcaagcacaaaatgtacaacactatggtcaacgagttcctccaacttacgacctgaccaaaatcccgaat |
30905621 |
T |
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| Q |
117 |
gaattccccctttttctcagctatggagggaaagatactctatctgatgtacaagatgtgaaggttttgttcaatgacctc |
197 |
Q |
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| T |
30905622 |
gatttcccactttttctcggatatggagggcaagatatgctatctgatgtacaagatgtgaaggttttgctcaatgacctc |
30905702 |
T |
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