View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4049_low_3 (Length: 552)

Name: NF4049_low_3
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4049_low_3
NF4049_low_3
[»] chr4 (11 HSPs)
chr4 (22-364)||(4422888-4423228)
chr4 (22-82)||(54235253-54235314)
chr4 (22-72)||(18995163-18995213)
chr4 (37-110)||(30848639-30848712)
chr4 (42-82)||(4479628-4479668)
chr4 (46-82)||(7270191-7270227)
chr4 (50-109)||(40391247-40391306)
chr4 (39-109)||(55762913-55762983)
chr4 (39-109)||(55827290-55827360)
chr4 (24-72)||(7270226-7270274)
chr4 (41-109)||(33759429-33759496)
[»] scaffold0034 (1 HSPs)
scaffold0034 (19-110)||(94936-95028)
[»] chr6 (8 HSPs)
chr6 (19-112)||(28004651-28004745)
chr6 (19-82)||(8211801-8211865)
chr6 (19-104)||(35003755-35003841)
chr6 (19-93)||(9829898-9829973)
chr6 (22-82)||(33822306-33822367)
chr6 (19-82)||(2282416-2282480)
chr6 (44-95)||(28596080-28596131)
chr6 (19-96)||(31323818-31323896)
[»] chr5 (19 HSPs)
chr5 (22-102)||(14646393-14646474)
chr5 (22-114)||(5727702-5727794)
chr5 (18-94)||(33498367-33498444)
chr5 (27-102)||(38958059-38958135)
chr5 (20-94)||(19644427-19644502)
chr5 (22-95)||(17234563-17234637)
chr5 (27-95)||(968318-968387)
chr5 (38-110)||(33669975-33670047)
chr5 (42-110)||(34252707-34252775)
chr5 (42-96)||(25467158-25467212)
chr5 (22-95)||(42324911-42324985)
chr5 (19-110)||(504114-504204)
chr5 (22-70)||(17858198-17858247)
chr5 (35-68)||(20185358-20185391)
chr5 (30-94)||(39030569-39030634)
chr5 (38-82)||(2424486-2424530)
chr5 (19-82)||(16500575-16500639)
chr5 (42-82)||(20219514-20219554)
chr5 (35-75)||(28023968-28024008)
[»] chr2 (19 HSPs)
chr2 (19-109)||(944762-944853)
chr2 (19-82)||(11386327-11386391)
chr2 (19-109)||(29291092-29291183)
chr2 (18-74)||(33615277-33615334)
chr2 (19-110)||(10459256-10459348)
chr2 (38-112)||(17437174-17437248)
chr2 (42-111)||(2884245-2884314)
chr2 (30-102)||(31469069-31469142)
chr2 (39-96)||(33829393-33829450)
chr2 (24-94)||(44726815-44726886)
chr2 (19-96)||(16180463-16180541)
chr2 (21-82)||(35693936-35693998)
chr2 (19-82)||(13453599-13453664)
chr2 (41-94)||(15660702-15660755)
chr2 (19-95)||(40823557-40823634)
chr2 (27-74)||(19924330-19924378)
chr2 (19-110)||(38935391-38935483)
chr2 (38-82)||(41912125-41912169)
chr2 (22-69)||(43398869-43398917)
[»] chr8 (9 HSPs)
chr8 (19-82)||(9548077-9548141)
chr8 (19-82)||(13209982-13210046)
chr8 (15-82)||(15114635-15114703)
chr8 (19-82)||(33557803-33557867)
chr8 (42-109)||(8777760-8777827)
chr8 (19-74)||(12788243-12788299)
chr8 (24-74)||(8637255-8637306)
chr8 (19-96)||(7974814-7974892)
chr8 (19-81)||(29797968-29798034)
[»] chr3 (7 HSPs)
chr3 (19-94)||(31280161-31280237)
chr3 (21-108)||(32221500-32221588)
chr3 (27-96)||(26914485-26914555)
chr3 (39-109)||(47783069-47783139)
chr3 (39-92)||(30806939-30806992)
chr3 (39-82)||(40955796-40955839)
chr3 (53-94)||(2983177-2983218)
[»] chr1 (10 HSPs)
chr1 (20-110)||(38067162-38067254)
chr1 (19-96)||(3694015-3694093)
chr1 (19-96)||(5056322-5056400)
chr1 (19-82)||(30693353-30693417)
chr1 (19-96)||(35310281-35310358)
chr1 (27-82)||(47543617-47543673)
chr1 (42-81)||(9238256-9238295)
chr1 (30-96)||(29855062-29855129)
chr1 (30-94)||(3739853-3739918)
chr1 (41-110)||(24023975-24024044)
[»] chr7 (7 HSPs)
chr7 (19-82)||(18732018-18732082)
chr7 (19-74)||(32652434-32652490)
chr7 (22-82)||(23971216-23971277)
chr7 (21-96)||(5026144-5026220)
chr7 (19-94)||(30794447-30794523)
chr7 (22-82)||(44816485-44816546)
chr7 (46-110)||(16866391-16866455)
[»] scaffold0027 (1 HSPs)
scaffold0027 (22-109)||(13165-13253)
[»] scaffold2113 (1 HSPs)
scaffold2113 (38-112)||(624-698)
[»] scaffold0067 (1 HSPs)
scaffold0067 (22-82)||(35958-36019)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 22 - 364
Target Start/End: Complemental strand, 4423228 - 4422888
Alignment:
Q  22 ataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttggtacggaaggagtatgtataataaa 120  Q
    |||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||| |||    
T  4423228 ataagttgatgtatttggtacaaattttgaatcaaatatattaatttttattgatcaattttcacttatattttggtacggaag-agtgtgtataacaaa 4423130  T
Q  121 tcgggtaactccaaaggtaacactttgctcctaacacaagaagggattgtatagtaagattccattgtctctactttttggcataaaggccaaactcaat 220  Q
    |||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4423129 tcgg-taactgcaaag-taacactttgctcctaacacaagaagggattgtatagtaagattccattgtctctactttttggcataaaggccaaactcaat 4423032  T
Q  221 catgaaagtaatggaagcaaataatctgaatgatgttgttaattagtggtgaggtgctcacaccaaaagttaggaggaaagctaaaactagtcgtttgag 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  4423031 catgaaagtaatggaagcaaataatctgaatgatgttgttaattagtggtgaggtgctaacaccaagagttaggaggaaagctaaaactagtcgtttgag 4422932  T
Q  321 atgttgaatgtaggacatatcatggtgatggctgttgagtttta 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  4422931 atgttgaatgtaggacatatcatggtgatggctgttgagtttta 4422888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 54235253 - 54235314
Alignment:
Q  22 ataaattgatgtattt-gtacaaattttgaaccaaatatattaatttttattgatcaatttt 82  Q
    |||||||||||||||| ||||||||||||||||||||| ||||| |||| |||| |||||||    
T  54235253 ataaattgatgtatttagtacaaattttgaaccaaatacattaacttttgttgagcaatttt 54235314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 18995163 - 18995213
Alignment:
Q  22 ataaattgatgtatttgtacaaattttgaaccaaatatattaatttttatt 72  Q
    |||| ||||||||| |||||||||||||||||||||| ||||| |||||||    
T  18995163 ataagttgatgtatctgtacaaattttgaaccaaatacattaacttttatt 18995213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 30848639 - 30848712
Alignment:
Q  37 tgtacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttggtacggaaggagtat 110  Q
    |||||||||||||||| ||||| |||||||||| |||| |||||||  |||| ||||| | ||||| |||||||    
T  30848639 tgtacaaattttgaacaaaatacattaatttttgttgaccaatttttgcttacattttagaacggatggagtat 30848712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 4479628 - 4479668
Alignment:
Q  42 aaattttgaaccaaatatattaatttttattgatcaatttt 82  Q
    |||||||||| ||||||||||||||||| ||||||||||||    
T  4479628 aaattttgaatcaaatatattaatttttgttgatcaatttt 4479668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 7270227 - 7270191
Alignment:
Q  46 tttgaaccaaatatattaatttttattgatcaatttt 82  Q
    |||||| ||||||||||||||||||||||||||||||    
T  7270227 tttgaatcaaatatattaatttttattgatcaatttt 7270191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 40391306 - 40391247
Alignment:
Q  50 aaccaaatatattaatttttattgatcaattttcccttatattttggtacggaaggagta 109  Q
    ||||||||| |||||||||| |||||| |||||  |||||||||||| || |||||||||    
T  40391306 aaccaaatacattaatttttgttgatcgatttttacttatattttgggacagaaggagta 40391247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 55762913 - 55762983
Alignment:
Q  39 tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttggtacggaaggagta 109  Q
    |||||||||| || |||||||||||| |||| |||| |||||||   ||||||||||| ||||| ||||||    
T  55762913 tacaaatttttaatcaaatatattaacttttgttgaccaatttttgtttatattttgggacggagggagta 55762983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 109
Target Start/End: Original strand, 55827290 - 55827360
Alignment:
Q  39 tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttggtacggaaggagta 109  Q
    |||||| ||| ||||||||||||||| |||| |||| |||||||  |||||||||||| ||| | ||||||    
T  55827290 tacaaaattttaaccaaatatattaacttttgttgaccaatttttgcttatattttgggacgaatggagta 55827360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 7270274 - 7270226
Alignment:
Q  24 aaattgatgtatttgtacaaattttgaaccaaatatattaatttttatt 72  Q
    ||||| |||||||||  |||||||||||||||||| | |||||||||||    
T  7270274 aaattaatgtatttgatcaaattttgaaccaaatacactaatttttatt 7270226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 33759429 - 33759496
Alignment:
Q  41 caaattttgaaccaaatatattaatttttattgatcaattttcccttatattttggtacggaaggagta 109  Q
    |||||||||||| ||||| |||||||||| |||| |||||||  |||||||||||| ||| || |||||    
T  33759429 caaattttgaactaaatacattaatttttgttgaccaatttt-acttatattttgggacgaaatgagta 33759496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 95028 - 94936
Alignment:
Q  19 aacataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttggtacggaaggagtat 110  Q
    ||||||| |||||||||||| ||||||||||||||  |||| |||||||||||||||||||||||| |||| |||||   |||||||||||||    
T  95028 aacataagttgatgtatttggtacaaattttgaacataatacattaatttttattgatcaattttcgcttacatttttaaacggaaggagtat 94936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 28004651 - 28004745
Alignment:
Q  19 aacataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttggtacggaaggagtatgt 112  Q
    |||| ||||| ||||||||| |||||||||||| ||||||| ||||| |||| ||||  |||||||||||||||||||| | |||||||||||||    
T  28004651 aacaaaaattaatgtatttggtacaaattttgagccaaatacattaacttttgttgactaattttcccttatattttgggatggaaggagtatgt 28004745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 8211865 - 8211801
Alignment:
Q  19 aacataaattgatgtattt-gtacaaattttgaaccaaatatattaatttttattgatcaatttt 82  Q
    |||||||||| |||||||| |||||||||| | |||||||||||||| |||||||||||||||||    
T  8211865 aacataaattaatgtatttagtacaaatttcggaccaaatatattaaattttattgatcaatttt 8211801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 35003841 - 35003755
Alignment:
Q  19 aacataaattgatgtattt-gtacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttggtacggaag 104  Q
    ||||||| ||||| ||||| |||||||||||||| |||||| ||||||||||||| | |||||||  |||||||||| | |||||||    
T  35003841 aacataagttgatatattttgtacaaattttgaatcaaatacattaatttttattaaccaatttttacttatattttaggacggaag 35003755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 93
Target Start/End: Complemental strand, 9829973 - 9829898
Alignment:
Q  19 aacataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattt 93  Q
    |||||||||||||||||||| |||||||||| ||| ||||| |||||||||| ||||  ||||||  |||||||||    
T  9829973 aacataaattgatgtatttggtacaaattttaaacaaaatacattaatttttgttgactaatttttacttatattt 9829898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 33822367 - 33822306
Alignment:
Q  22 ataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaatttt 82  Q
    |||| |||||||||||| |||||||||||||| ||||||||||| |||| || |||||||||    
T  33822367 ataagttgatgtatttgatacaaattttgaactaaatatattaacttttgttaatcaatttt 33822306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 2282480 - 2282416
Alignment:
Q  19 aacataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaatttt 82  Q
    |||||||||||||||||||| ||||| |||||||| ||||| ||||| |||| |||| |||||||    
T  2282480 aacataaattgatgtatttgatacaatttttgaactaaatacattaacttttgttgaccaatttt 2282416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 44 - 95
Target Start/End: Complemental strand, 28596131 - 28596080
Alignment:
Q  44 attttgaaccaaatatattaatttttattgatcaattttcccttatattttg 95  Q
    |||||||||||||||||||||||||| |||| |||||||  |||| ||||||    
T  28596131 attttgaaccaaatatattaatttttgttgaccaatttttacttacattttg 28596080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 31323896 - 31323818
Alignment:
Q  19 aacataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttgg 96  Q
    ||||||| ||||||||| || |||||||||||||| ||||| ||||| |||| |||| |||||||  |||| |||||||    
T  31323896 aacataagttgatgtatctggtacaaattttgaacaaaatacattaacttttgttgaccaatttttgcttacattttgg 31323818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 14646393 - 14646474
Alignment:
Q  22 ataaattgatgtattt-gtacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttggtacgga 102  Q
    ||||||| |||||||| |||||||||||||| || ||| ||||||||||||| |||||||||| |||||||||||| |||||    
T  14646393 ataaattaatgtatttagtacaaattttgaatcatatacattaatttttatttatcaattttcgcttatattttgggacgga 14646474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 5727794 - 5727702
Alignment:
Q  22 ataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttggtacggaaggagtatgtat 114  Q
    |||| ||||||||| || |||||||||| |||||| |||||||||||||||||| |||||||  |||| ||||||| ||||||| ||| |||||    
T  5727794 ataagttgatgtatctggtacaaattttaaaccaa-tatattaatttttattgaccaatttttacttacattttgggacggaagaagtgtgtat 5727702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 33498444 - 33498367
Alignment:
Q  18 aaacataaattgatgtattt-gtacaaattttgaaccaaatatattaatttttattgatcaattttcccttatatttt 94  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||| |||||| |||  ||| |||  ||||||||||    
T  33498444 aaacataagttgatgtattttgtacaaattttgaaccaaatatattgatttttgttggccaacttttgcttatatttt 33498367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 38958135 - 38958059
Alignment:
Q  27 ttgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttggtacgga 102  Q
    |||||||||||| |||||| ||||||||||||| ||||| |||| || |||||||||  |||||||||||| |||||    
T  38958135 ttgatgtatttggtacaaaatttgaaccaaatacattaacttttgttaatcaatttttacttatattttggaacgga 38958059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 19644427 - 19644502
Alignment:
Q  20 acataaattgatgtattt-gtacaaattttgaaccaaatatattaatttttattgatcaattttcccttatatttt 94  Q
    |||||| ||||||||||| ||| |||||||||||||||||  ||||||||| |||||||||| |  ||||||||||    
T  19644427 acataagttgatgtatttagtataaattttgaaccaaatacgttaatttttgttgatcaattcttacttatatttt 19644502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 17234563 - 17234637
Alignment:
Q  22 ataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttg 95  Q
    ||||||| ||||||||| |||||||||| ||| ||||||||||||||||||| | |||||| | ||| |||||||    
T  17234563 ataaattaatgtatttgctacaaattttaaacaaaatatattaatttttatttaccaatttccgcttttattttg 17234637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 968318 - 968387
Alignment:
Q  27 ttgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttg 95  Q
    |||||||||||| |||||||||||||| |||||||||||||||| ||||   |||||  |||||||||||    
T  968318 ttgatgtatttggtacaaattttgaactaaatatattaatttttgttgactcatttttacttatattttg 968387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 33669975 - 33670047
Alignment:
Q  38 gtacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttggtacggaaggagtat 110  Q
    ||||||||||| ||||||||| ||||| |||| |||| |||||||  |||| ||||||| ||||| |||||||    
T  33669975 gtacaaattttaaaccaaatacattaactttttttgaccaatttttgcttacattttgggacggatggagtat 33670047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 42 - 110
Target Start/End: Complemental strand, 34252775 - 34252707
Alignment:
Q  42 aaattttgaaccaaatatattaatttttattgatcaattttcccttatattttggtacggaaggagtat 110  Q
    ||||||||||||||||| ||||| |||| |||| |||||||  |||| ||||||| ||||| |||||||    
T  34252775 aaattttgaaccaaatacattaacttttgttgaccaatttttgcttacattttgggacggagggagtat 34252707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 25467158 - 25467212
Alignment:
Q  42 aaattttgaaccaaatatattaatttttattgatcaattttcccttatattttgg 96  Q
    ||||||||||||| ||| ||||| |||||| |||||||||| ||||| |||||||    
T  25467158 aaattttgaaccacatacattaacttttatcgatcaatttttccttagattttgg 25467212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 42324911 - 42324985
Alignment:
Q  22 ataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttg 95  Q
    ||||||||||||||||| || ||||||| || |||||| ||||| |||| |||| |||||||  |||||||||||    
T  42324911 ataaattgatgtatttggtataaattttaaaacaaatacattaacttttgttgaccaatttttacttatattttg 42324985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 504204 - 504114
Alignment:
Q  19 aacataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttggtacggaaggagtat 110  Q
    |||| ||||| ||||||||| |||||||| ||||||||||||  |||||||| |||| | |||||  ||||||||||   |||||||||||||    
T  504204 aacaaaaattaatgtatttgatacaaattctgaaccaaatat--taatttttgttgaccgatttttgcttatattttaaaacggaaggagtat 504114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 17858247 - 17858198
Alignment:
Q  22 ataaattgatgtatttg-tacaaattttgaaccaaatatattaattttta 70  Q
    |||| ||||||||| || |||||||||||||||||||| |||||||||||    
T  17858247 ataagttgatgtatctgatacaaattttgaaccaaatacattaattttta 17858198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 20185358 - 20185391
Alignment:
Q  35 tttgtacaaattttgaaccaaatatattaatttt 68  Q
    |||||||||||||||||||||||| |||||||||    
T  20185358 tttgtacaaattttgaaccaaatacattaatttt 20185391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 39030634 - 39030569
Alignment:
Q  30 atgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatatttt 94  Q
    ||||||||| |||||||||| ||||||||| ||||| |||| |||| |||||||  ||||||||||    
T  39030634 atgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttatatttt 39030569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 2424486 - 2424530
Alignment:
Q  38 gtacaaattttgaaccaaatatattaatttttattgatcaatttt 82  Q
    ||||||||||||||||||||| ||||| |||||| || |||||||    
T  2424486 gtacaaattttgaaccaaatacattaacttttatcgaccaatttt 2424530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 16500639 - 16500575
Alignment:
Q  19 aacataaattgatgtatttgtac-aaattttgaaccaaatatattaatttttattgatcaatttt 82  Q
    ||||||||||||||||| || |  |||||||||||||| || |||||||||| |||| |||||||    
T  16500639 aacataaattgatgtatctggattaaattttgaaccaattacattaatttttgttgaacaatttt 16500575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 82
Target Start/End: Complemental strand, 20219554 - 20219514
Alignment:
Q  42 aaattttgaaccaaatatattaatttttattgatcaatttt 82  Q
    |||||||||| |||||||||||| |||| ||||||||||||    
T  20219554 aaattttgaatcaaatatattaacttttgttgatcaatttt 20219514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 28023968 - 28024008
Alignment:
Q  35 tttgtacaaattttgaaccaaatatattaatttttattgat 75  Q
    ||||||||||||||||| |||||| ||||| ||||||||||    
T  28023968 tttgtacaaattttgaatcaaatacattaacttttattgat 28024008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 944853 - 944762
Alignment:
Q  19 aacataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttggtacggaaggagta 109  Q
    ||||||| |||||||||||| |||||||||||||| ||||| ||||| ||||||||||| |||||  |||||||||||  |||||| |||||    
T  944853 aacataagttgatgtatttggtacaaattttgaactaaatacattaacttttattgatcgatttttgcttatattttgaaacggaaagagta 944762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 11386391 - 11386327
Alignment:
Q  19 aacataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaatttt 82  Q
    ||||||| |||||||||||| |||||||||||||  |||||||||||||||| ||||||||||||    
T  11386391 aacataagttgatgtatttgatacaaattttgaattaaatatattaatttttgttgatcaatttt 11386327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 29291092 - 29291183
Alignment:
Q  19 aacataaattgatgtattt-gtacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttggtacggaaggagta 109  Q
    ||||||||||||||||| | ||| |  |||||||||||||||||||| ||||||||| |||||||  |||| ||||||| ||||| ||||||    
T  29291092 aacataaattgatgtatctagtaaattttttgaaccaaatatattaacttttattgaccaatttttgcttacattttgggacggagggagta 29291183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 33615334 - 33615277
Alignment:
Q  18 aaacataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattga 74  Q
    |||||||| |||||||||||| ||||||||||||| ||||||||||||| ||||||||    
T  33615334 aaacataagttgatgtatttgatacaaattttgaatcaaatatattaatatttattga 33615277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 10459348 - 10459256
Alignment:
Q  19 aacataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttggtacggaaggagtat 110  Q
    ||||||| |||||| || || |||||||||||||||||||| ||||| |||| |||| |||||||  |||||||||||| | ||| |||||||    
T  10459348 aacataagttgatgcatctgatacaaattttgaaccaaatacattaacttttgttgaccaatttttgcttatattttgggaaggagggagtat 10459256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 17437174 - 17437248
Alignment:
Q  38 gtacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttggtacggaaggagtatgt 112  Q
    ||||||||||||||| ||||| |||||||||| ||||  ||||||   ||||||||||| ||||| |||||||||    
T  17437174 gtacaaattttgaactaaatacattaatttttgttgacaaatttttgtttatattttgggacggagggagtatgt 17437248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 2884314 - 2884245
Alignment:
Q  42 aaattttgaaccaaatatattaatttttattgatcaattttcccttatattttggtacggaaggagtatg 111  Q
    ||||||||||||||||| |||||||||| ||||  ||||||  |||||||||| | ||||| ||||||||    
T  2884314 aaattttgaaccaaatacattaatttttgttgacaaatttttacttatattttaggacggatggagtatg 2884245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 31469142 - 31469069
Alignment:
Q  30 atgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttggtacgga 102  Q
    ||||||||| |||||||||| ||||||||| ||||| |||| |||| |||||||  |||||||||||| |||||    
T  31469142 atgtatttgatacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttatattttgggacgga 31469069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 33829450 - 33829393
Alignment:
Q  39 tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttgg 96  Q
    ||||||||||| ||||||||||||||||||| |||| |||||||   |||||||||||    
T  33829450 tacaaattttgtaccaaatatattaatttttgttgaccaatttttgtttatattttgg 33829393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 44726815 - 44726886
Alignment:
Q  24 aaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatatttt 94  Q
    |||||||| |||||| || ||||||| ||| ||||| |||||||||| ||||||||||||  ||||||||||    
T  44726815 aaattgatatatttgatataaattttaaactaaatacattaatttttgttgatcaattttttcttatatttt 44726886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 16180463 - 16180541
Alignment:
Q  19 aacataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttgg 96  Q
    ||||||||||||||||||   || ||||||||||||||||| ||||| |||| |||| ||| |||  ||||||||||||    
T  16180463 aacataaattgatgtattaaatataaattttgaaccaaatacattaacttttgttgaccaaattttacttatattttgg 16180541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 35693998 - 35693936
Alignment:
Q  21 cataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaatttt 82  Q
    |||| ||| ||||||||| ||| |||||| ||||||||| ||||||||||||||| |||||||    
T  35693998 catagattaatgtatttgatactaattttaaaccaaatacattaatttttattgaccaatttt 35693936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 13453664 - 13453599
Alignment:
Q  19 aacataaattgatgtattt-gtacaaattttgaaccaaatatattaat-ttttattgatcaatttt 82  Q
    |||||||||||||| |||| | ||||||||||||| ||| |||||||| |||| ||||||||||||    
T  13453664 aacataaattgatgcatttagcacaaattttgaactaaagatattaattttttgttgatcaatttt 13453599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 15660702 - 15660755
Alignment:
Q  41 caaattttgaaccaaatatattaatttttattgatcaattttcccttatatttt 94  Q
    ||||||||||| |||||| |||||||| | ||||||||||||  ||||||||||    
T  15660702 caaattttgaatcaaatacattaatttgtgttgatcaatttttgcttatatttt 15660755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 40823557 - 40823634
Alignment:
Q  19 aacataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttg 95  Q
    ||||||| |||||||||||| || ||||||| ||||||||| || ||| | | ||||||||||||  |||||||||||    
T  40823557 aacataatttgatgtatttgatataaattttaaaccaaatacataaatgtctcttgatcaatttttacttatattttg 40823634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 19924378 - 19924330
Alignment:
Q  27 ttgatgtatttg-tacaaattttgaaccaaatatattaatttttattga 74  Q
    |||||||||||| |||||||||||||||| ||| ||||| |||||||||    
T  19924378 ttgatgtatttggtacaaattttgaaccatatacattaacttttattga 19924330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 38935391 - 38935483
Alignment:
Q  19 aacataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttggtacggaaggagtat 110  Q
    ||||||| |||||||||||| |||| ||||||||| ||||| ||||| |||| ||||  ||||||   ||||||||| | ||||| |||||||    
T  38935391 aacataagttgatgtatttgatacagattttgaacaaaatacattaacttttgttgagtaatttttgtttatatttttggacggatggagtat 38935483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 41912125 - 41912169
Alignment:
Q  38 gtacaaattttgaaccaaatatattaatttttattgatcaatttt 82  Q
    ||||||||||||||||| ||| |||||||||| |||| |||||||    
T  41912125 gtacaaattttgaaccagatacattaatttttgttgaacaatttt 41912169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 43398869 - 43398917
Alignment:
Q  22 ataaattgatgtatttg-tacaaattttgaaccaaatatattaattttt 69  Q
    |||| |||||||||||| |||||||||||||||||||| ||||| ||||    
T  43398869 ataagttgatgtatttggtacaaattttgaaccaaatacattaactttt 43398917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 9548077 - 9548141
Alignment:
Q  19 aacataaattgatgtattt-gtacaaattttgaaccaaatatattaatttttattgatcaatttt 82  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||| |||||||    
T  9548077 aacataagttgatgtatttagtacaaattttgaaccaaatataataatttttgttgaacaatttt 9548141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 13210046 - 13209982
Alignment:
Q  19 aacataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaatttt 82  Q
    ||||||| ||||||||| || |||||||||||||||||||| ||||| |||| ||||||||||||    
T  13210046 aacataagttgatgtatctgatacaaattttgaaccaaatacattaacttttgttgatcaatttt 13209982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 15114703 - 15114635
Alignment:
Q  15 atcaaacataaattgatgtattt-gtacaaattttgaaccaaatatattaatttttattgatcaatttt 82  Q
    |||||||||||||||| |||||| | |||||||||||| |||||| |||||||||| |||| |||||||    
T  15114703 atcaaacataaattgacgtatttagaacaaattttgaatcaaatacattaatttttgttgaccaatttt 15114635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 33557803 - 33557867
Alignment:
Q  19 aacataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaatttt 82  Q
    ||||||| || ||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||    
T  33557803 aacataagtttatgtatttgatacaaattttgaactaaatacattaacttttattgatcaatttt 33557867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 8777827 - 8777760
Alignment:
Q  42 aaattttgaaccaaatatattaatttttattgatcaattttcccttatattttggtacggaaggagta 109  Q
    ||||||||||||||||||||||| |||| ||||||||||||   |||||||||   ||||||||||||    
T  8777827 aaattttgaaccaaatatattaacttttgttgatcaatttttgtttatattttaagacggaaggagta 8777760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 12788243 - 12788299
Alignment:
Q  19 aacataaattgatgtatttgt-acaaattttgaaccaaatatattaatttttattga 74  Q
    ||||||||||||||||||||| | |||| | |||| |||||||||||||||||||||    
T  12788243 aacataaattgatgtatttgttataaatatagaacaaaatatattaatttttattga 12788299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 8637306 - 8637255
Alignment:
Q  24 aaattgatgtatttgtac-aaattttgaaccaaatatattaatttttattga 74  Q
    ||||||||||||||| || |||||||||||||||||||| ||||||| ||||    
T  8637306 aaattgatgtatttggaccaaattttgaaccaaatatatcaattttttttga 8637255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 7974814 - 7974892
Alignment:
Q  19 aacataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttgg 96  Q
    |||||||||||| ||||||| ||||||||||||   ||||| ||||| ||||||||| |||||||   |||||||||||    
T  7974814 aacataaattgacgtatttggtacaaattttgacaaaaatacattaacttttattgaccaatttttgtttatattttgg 7974892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 29797968 - 29798034
Alignment:
Q  19 aacataaattgatgtatttg-tacaaattttgaac---caaatatattaatttttattgatcaattt 81  Q
    |||||||||| ||||||||| ||||||||||||||   |||||| |||||||||| |||| ||||||    
T  29797968 aacataaatttatgtatttggtacaaattttgaaccaacaaatacattaatttttgttgaccaattt 29798034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 31280237 - 31280161
Alignment:
Q  19 aacataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatatttt 94  Q
    |||||||||| |||||| || |||||||||||||||||||| ||||| |||| ||||||||||||  ||||||||||    
T  31280237 aacataaattaatgtatatggtacaaattttgaaccaaatacattaaattttgttgatcaatttttacttatatttt 31280161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 32221500 - 32221588
Alignment:
Q  21 cataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttggtacggaaggagt 108  Q
    |||||||||||||||||| |||||||||||||||||||| ||||| |||| ||||  ||||||  |||| |||||| |||||| |||||    
T  32221500 cataaattgatgtatttggtacaaattttgaaccaaatacattaacttttgttgactaatttttgcttacattttgatacggagggagt 32221588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 26914485 - 26914555
Alignment:
Q  27 ttgatgtattt-gtacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttgg 96  Q
    ||||||||||| ||| ||||||||||||| ||| |||||||||| ||||||||||||  |||| |||||||    
T  26914485 ttgatgtatttagtataaattttgaaccacatacattaatttttgttgatcaatttttgcttacattttgg 26914555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 109
Target Start/End: Complemental strand, 47783139 - 47783069
Alignment:
Q  39 tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttggtacggaaggagta 109  Q
    |||||||||||||||||||| ||||| |||| |||| |||||||  |||| ||||||| | ||||||||||    
T  47783139 tacaaattttgaaccaaatacattaactttttttgaccaatttttacttacattttggaatggaaggagta 47783069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 30806992 - 30806939
Alignment:
Q  39 tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatatt 92  Q
    ||||||||||| ||||| || |||||||||||||||||||||||  ||||||||    
T  30806992 tacaaattttggaccaagtacattaatttttattgatcaattttttcttatatt 30806939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 40955839 - 40955796
Alignment:
Q  39 tacaaattttgaaccaaatatattaatttttattgatcaatttt 82  Q
    |||||||||||||| ||||| | |||||||||||||||||||||    
T  40955839 tacaaattttgaactaaatacaataatttttattgatcaatttt 40955796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 2983218 - 2983177
Alignment:
Q  53 caaatatattaatttttattgatcaattttcccttatatttt 94  Q
    |||||||||||| |||||||||||||||||  ||||||||||    
T  2983218 caaatatattaacttttattgatcaatttttacttatatttt 2983177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 38067162 - 38067254
Alignment:
Q  20 acataaattgatgtattt-gtacaaattttgaaccaaatatattaattttt-attgatcaattttcccttatattttggtacggaaggagtat 110  Q
    |||||||||||||||||| ||| |||||||||| ||| ||| ||||||||| ||||| ||||||| ||||||||||||| | ||| |||||||    
T  38067162 acataaattgatgtatttagtataaattttgaatcaattatgttaattttttattgaccaatttttccttatattttgggagggagggagtat 38067254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 3694015 - 3694093
Alignment:
Q  19 aacataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttgg 96  Q
    |||||||||||||||||||  ||||||||||||| |||||| |||||||||| |||| ||||||   ||||||||||||    
T  3694015 aacataaattgatgtatttaatacaaattttgaatcaaatacattaatttttgttgaccaatttctacttatattttgg 3694093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 5056322 - 5056400
Alignment:
Q  19 aacataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttgg 96  Q
    ||||||| |||||||||||| ||||||||||||| ||||||  |||||||||||||| |||||||   |||||||||||    
T  5056322 aacataagttgatgtatttgatacaaattttgaatcaaatacgttaatttttattgaccaatttttgtttatattttgg 5056400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 30693417 - 30693353
Alignment:
Q  19 aacataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaatttt 82  Q
    |||||||  ||||||||||| ||||||||||||| |||||| |||||||||| ||||||||||||    
T  30693417 aacataatatgatgtatttggtacaaattttgaatcaaatacattaatttttgttgatcaatttt 30693353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 96
Target Start/End: Original strand, 35310281 - 35310358
Alignment:
Q  19 aacataaattgatgtatttgtacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttgg 96  Q
    |||||||||||||| || | || ||||||| || |||||| |||||||||| |||| |||||||  ||||||||||||    
T  35310281 aacataaattgatggatctatataaattttaaatcaaatacattaatttttgttgaccaatttttacttatattttgg 35310358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 47543673 - 47543617
Alignment:
Q  27 ttgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaatttt 82  Q
    |||||||||||| |||||||||||||||||||  |||||||||| |||| |||||||    
T  47543673 ttgatgtatttggtacaaattttgaaccaaattcattaatttttgttgaccaatttt 47543617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 9238256 - 9238295
Alignment:
Q  42 aaattttgaaccaaatatattaatttttattgatcaattt 81  Q
    |||||||||| ||||||||||||||||| |||||||||||    
T  9238256 aaattttgaatcaaatatattaatttttgttgatcaattt 9238295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 29855129 - 29855062
Alignment:
Q  30 atgtattt-gtacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttgg 96  Q
    |||||||| ||||||||||| ||||||||| || || |||| ||||| ||||||| ||||||||||||    
T  29855129 atgtatttcgtacaaatttttaaccaaatacatcaacttttgttgattaattttcgcttatattttgg 29855062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 3739853 - 3739918
Alignment:
Q  30 atgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatatttt 94  Q
    ||||||||| |||||||||| ||||||||| ||||| |||| |||| |||||||  ||||||||||    
T  3739853 atgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttatatttt 3739918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 110
Target Start/End: Original strand, 24023975 - 24024044
Alignment:
Q  41 caaattttgaaccaaatatattaatttttattgatcaattttcccttatattttggtacggaaggagtat 110  Q
    |||||||||||||| ||| ||||| |||| ||||||||||||   ||||||||| | ||||| |||||||    
T  24023975 caaattttgaaccacatacattaacttttgttgatcaattttttgttatattttaggacggatggagtat 24024044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 18732018 - 18732082
Alignment:
Q  19 aacataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaatttt 82  Q
    ||||||||||||||||| || || ||||||||||||||||| ||||| ||||||||| |||||||    
T  18732018 aacataaattgatgtatctggtataaattttgaaccaaatacattaacttttattgaccaatttt 18732082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 32652434 - 32652490
Alignment:
Q  19 aacataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattga 74  Q
    ||||||||||| |||||||| |||||| ||||||||||||| |||||||||||||||    
T  32652434 aacataaattggtgtatttggtacaaactttgaaccaaatacattaatttttattga 32652490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 23971216 - 23971277
Alignment:
Q  22 ataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaatttt 82  Q
    |||| |||||||||||| |||||||||||||| ||||||||| |||||| |||| |||||||    
T  23971216 ataagttgatgtatttggtacaaattttgaactaaatatatttatttttgttgaccaatttt 23971277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 5026220 - 5026144
Alignment:
Q  21 cataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttgg 96  Q
    ||||| |||||||||||| ||||||||||| || ||||||||||| |||| || | |||||||  ||||||||||||    
T  5026220 cataagttgatgtatttggtacaaattttggactaaatatattaacttttgttaaccaatttttgcttatattttgg 5026144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 30794523 - 30794447
Alignment:
Q  19 aacataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaattttcccttatatttt 94  Q
    |||||||||  ||||||||| ||||||||||||| |||||||||||| |||| |||| ||| |||  ||||||||||    
T  30794523 aacataaatgaatgtatttggtacaaattttgaatcaaatatattaaattttgttgaccaaattttacttatatttt 30794447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 44816546 - 44816485
Alignment:
Q  22 ataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaatttt 82  Q
    ||||| ||||||||||| |||||||||||||||||||| ||||| |||| |||  |||||||    
T  44816546 ataaactgatgtatttggtacaaattttgaaccaaatacattaacttttgttggccaatttt 44816485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 16866455 - 16866391
Alignment:
Q  46 tttgaaccaaatatattaatttttattgatcaattttcccttatattttggtacggaaggagtat 110  Q
    |||| ||| |||| ||||| |||||||||||||||||  |||||||||||| | ||| |||||||    
T  16866455 tttgtacctaatacattaacttttattgatcaatttttgcttatattttgggatggagggagtat 16866391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 109
Target Start/End: Complemental strand, 13253 - 13165
Alignment:
Q  22 ataaattgatgtat-ttgtacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttggtacggaaggagta 109  Q
    |||| ||||||||| ||||||||||||| ||||||||| ||||| |||| |||||| |||||  |||| ||||||| | ||| ||||||    
T  13253 ataagttgatgtatcttgtacaaattttaaaccaaatacattaacttttgttgatccatttttgcttacattttggaatggagggagta 13165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2113 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold2113
Description:

Target: scaffold2113; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 624 - 698
Alignment:
Q  38 gtacaaattttgaaccaaatatattaatttttattgatcaattttcccttatattttggtacggaaggagtatgt 112  Q
    ||||||||||||||| ||||| | ||| |||| ||||  ||||||| |||||||||||| | ||||| |||||||    
T  624 gtacaaattttgaactaaatacaataacttttgttgactaattttcacttatattttgggatggaagaagtatgt 698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 36019 - 35958
Alignment:
Q  22 ataaattgatgtatttg-tacaaattttgaaccaaatatattaatttttattgatcaatttt 82  Q
    ||||||||||||||||| ||||||||||| |||||||| |||||   || ||||||||||||    
T  36019 ataaattgatgtatttgatacaaattttgtaccaaatacattaacggttgttgatcaatttt 35958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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