View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4049_low_37 (Length: 241)
Name: NF4049_low_37
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4049_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 8807477 - 8807253
Alignment:
| Q |
1 |
tttcagatggtttgttagtagactttccaggaacctcatcgtgtcgacagtacaacgatttgaattcatttggtgagaggagttttgatggaagaaacta |
100 |
Q |
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| T |
8807477 |
tttcagatggtttgttagtagactttccaggaacctcatcgtgtcgacagtacaacgatttgaattcatttggtgagaggagttttgatggaagaaacta |
8807378 |
T |
|
| Q |
101 |
ctttggtgtatcagttgataatgttgttggtctgtatgattgtgaagattcttcactttgtaaagcagattgtgaaacagttaaccttcctggttgtgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8807377 |
ctttggtgtatcagttgataatgttgttggtctgtatgattgtgaagattcttcactttgtaaagcagattgtgaaacagttaatcttcctggttgtgat |
8807278 |
T |
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| Q |
201 |
ggaagtgttggtggtggttctcttg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
8807277 |
ggaagtgttggtggtggttctcttg |
8807253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 22923874 - 22923667
Alignment:
| Q |
5 |
agatggtttgttagtagactttccagga-acctcatcgtgtcgacagtacaacgatttgaattcatttggtgagaggagttttgatggaagaaactac-- |
101 |
Q |
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|||| ||||||||||||||||| |||| || || || ||||||| |||||||||||||||| ||||| |||||||||||||||| || ||| | |
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| T |
22923874 |
agattgtttgttagtagactttt-aggatacatcgtcatgtcgacgatacaacgatttgaatttatttgaagagaggagttttgatgaaaaaaaaatcaa |
22923776 |
T |
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| Q |
102 |
tttggtgtatcagttgataatgttgttggtctgtatgattgtgaagattcttcactttgtaaagcagattgtgaaacagttaaccttcctggttgtgatg |
201 |
Q |
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|||||||| | |||||||||| |||||| ||| | ||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
22923775 |
tttggtgtcttagttgataattttgttgctctctgtgattgtgaaggttcttcactttgtaaagcaaattgcgaaacagttaaccttcctggttgtgatg |
22923676 |
T |
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| Q |
202 |
gaagtgttg |
210 |
Q |
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||||||||| |
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| T |
22923675 |
gaagtgttg |
22923667 |
T |
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