View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4049_low_38 (Length: 241)
Name: NF4049_low_38
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4049_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 55355304 - 55355525
Alignment:
| Q |
1 |
ggaagagaagcttgcgtatgtgctgtttatgcaatgaaagaagagcttctctgaagagacctaaaacccttcaacagatttgcagagaatgcttctacct |
100 |
Q |
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| T |
55355304 |
ggaagagaagcttgcgtatgtgctgtttatgcaatgaaagaagagcttctctgaagagacctaaaacccttcaacagatttgcagagaatgcttctacct |
55355403 |
T |
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| Q |
101 |
tgctttcgaagatgagattcatcaactcatcgtcgataactgcctcttcacccgcggcgaccgagtcgccatcggagcttccggcggtaaagactccacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
55355404 |
tgctttcgaagatgagattcatcaactcatcgtcgataaccgcctcttcacccgcggcgaccgaatcgccatcggagcttccggcggtaaagactccacc |
55355503 |
T |
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| Q |
201 |
gtcctcgcttacgtcttatcca |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
55355504 |
gtcctcgcttacgtcttatcca |
55355525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 32398987 - 32399051
Alignment:
| Q |
1 |
ggaagagaagcttgcgtatgtgctgtttatgcaatgaaagaagagcttctctgaagagacctaaa |
65 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32398987 |
ggaagagaagcgtgcgtatgtgctgtttatgcaatgaaagaagagcttctctcaagagacctaaa |
32399051 |
T |
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