View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4049_low_4 (Length: 551)
Name: NF4049_low_4
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4049_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Complemental strand, 44693337 - 44692802
Alignment:
| Q |
1 |
gcaccactgagacggaatcaaccccgaaaaccagacaaccagcgaaggaaaaccagacagaaaacgataccttcagcagacaaaccaaacagcacaaaaa |
100 |
Q |
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| T |
44693337 |
gcaccactgagacggaatcaaccccgaaaaccagacaactagcgaaggaaaaccagacagaaaacgataccttcagcagacaaaccaaacagcacaaaaa |
44693238 |
T |
|
| Q |
101 |
caactatctcaatagacacaacttcggattccaacttcactcataataaaggcaggccggtatattaaggcgggataggcaccacctccacgataaaact |
200 |
Q |
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| T |
44693237 |
caactatctcaatagacacaacttcggattccaacttcactcataataaaggcaggccggtatcttaaggctggataggcaccacctccacgataaaact |
44693138 |
T |
|
| Q |
201 |
ttaacctc-tcaatgatttccaacacttccttcaccttgtcattaaatatcttatcatttctcgctttccaaatcacccaaattgtcgcgtgccaaatga |
299 |
Q |
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| T |
44693137 |
ttaacctcctcaacgatttccaacacttccttcaccttgtcattaaatatcttatcatttctcgctttccaaatcacccaaattgtcgcgtgccaaatga |
44693038 |
T |
|
| Q |
300 |
gtctaaatcccttaatcatcttcttattagaggctcccgcattccaacagaaccaatgattaaaaacactttgcggcattataaacatactatcaaccca |
399 |
Q |
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| T |
44693037 |
gtctaaatcccttaatcatcttcttattagaggctcccgcattccaacagagccaatgattaaaaacactttgcggcattataaacatactatcaaccca |
44692938 |
T |
|
| Q |
400 |
cttgagaagctccaaccaaatccctctagccaccggacaatgcacaaaaaggtgattagatctttccatttcctcctcgcacaacacacatctaaccgaa |
499 |
Q |
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| T |
44692937 |
cttgagaagctccaaccaaatccctctagccaccggacaatgcacaaaaaggtgattagatatttccatttcctcctcgcacaacacacatctaaccgaa |
44692838 |
T |
|
| Q |
500 |
acctccggggggagggcattcctcctacgaagattc |
535 |
Q |
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| T |
44692837 |
acctccggggggagggcattccttctacgaagattc |
44692802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 6e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 217 - 516
Target Start/End: Original strand, 34866072 - 34866371
Alignment:
| Q |
217 |
ttccaacacttccttcaccttgtcattaaatatcttatcatttctcgctttccaaatcacccaaattgtcgcgtgccaaatgagtctaaatcccttaatc |
316 |
Q |
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| T |
34866072 |
ttccatcacctctttctccttgtcgttaaaaatcttatcattcctcatcttccaaataacccaaattgcggcatgccaaatgagtctaaaacccttaatc |
34866171 |
T |
|
| Q |
317 |
atcttcttattagaggctcccgcattccaacagaaccaatgattaaaaacactttgcggcattataaacatactatcaacccacttgagaagctccaacc |
416 |
Q |
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| T |
34866172 |
aatttcttattagaggcacccgcattccaacacaaccaatgattaaaaacattttgaggcatcaaaaacatattatcaacccacttaaggagttctaacc |
34866271 |
T |
|
| Q |
417 |
aaatccctctagccaccggacaatgcacaaaaaggtgattagatctttccatttcctcctcgcacaacacacatctaaccgaaacctccggggggagggc |
516 |
Q |
| |
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||||||||||||||||| ||||||| | || |||||| | ||| ||||| | || ||||||| || |||| || ||||| |||||||| || ||||| |
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| T |
34866272 |
aaatccctctagccaccatacaatgcgcgaagaggtgaatggatgtttccgtctcaacctcgcataaagcacacctcaccgagacctccggaggaagggc |
34866371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 296
Target Start/End: Original strand, 28890608 - 28890672
Alignment:
| Q |
232 |
caccttgtcattaaatatcttatcatttctcgctttccaaatcacccaaattgtcgcgtgccaaa |
296 |
Q |
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||||||||||||||| || | | ||||||| |||||||| |||||||||||| |||||||||| |
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| T |
28890608 |
caccttgtcattaaaaatttgaccatttctatatttccaaagcacccaaattgttgcgtgccaaa |
28890672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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