View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4049_low_40 (Length: 240)
Name: NF4049_low_40
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4049_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 69 - 222
Target Start/End: Complemental strand, 36711317 - 36711164
Alignment:
| Q |
69 |
ttcatctttaatcaaataccattaattcatatttgcaattgttcttttgaatccaagattatgcttactctttatttttgattaatttaaaatttcccaa |
168 |
Q |
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| T |
36711317 |
ttcatctttaatcaaataccattaattcatatttgcaattgttcttttgaatccaagatgatgcttactctttatttttgattaatttaaaatttcccaa |
36711218 |
T |
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| Q |
169 |
cacataagatacgtcttcccatttttcattcattgggagattcactcacattag |
222 |
Q |
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| T |
36711217 |
cacataagatacgtcttcccatttttcattcattgggagattcactcacattag |
36711164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 36711500 - 36711428
Alignment:
| Q |
1 |
cttttttcaatgctcattgattttacgatgattatcatgtatgtaataactttctcattaagttgaatttcat |
73 |
Q |
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|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36711500 |
cttttttcaacgctcattgattttacgatgattattatgtatgtaataactttctcattaagttgaatttcat |
36711428 |
T |
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