View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4049_low_45 (Length: 238)

Name: NF4049_low_45
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4049_low_45
NF4049_low_45
[»] chr8 (5 HSPs)
chr8 (1-236)||(4362595-4362839)
chr8 (154-228)||(12132469-12132543)
chr8 (154-228)||(14694828-14694902)
chr8 (154-227)||(33332316-33332389)
chr8 (151-219)||(41264125-41264192)
[»] chr4 (7 HSPs)
chr4 (150-228)||(40818914-40818992)
chr4 (150-227)||(42243861-42243938)
chr4 (154-228)||(7328083-7328157)
chr4 (154-228)||(7984526-7984600)
chr4 (154-228)||(29275981-29276055)
chr4 (169-228)||(32270446-32270505)
chr4 (172-219)||(748594-748641)
[»] chr1 (3 HSPs)
chr1 (150-228)||(31972639-31972717)
chr1 (169-219)||(395465-395515)
chr1 (154-219)||(29529073-29529137)
[»] chr5 (5 HSPs)
chr5 (150-227)||(3432374-3432451)
chr5 (151-227)||(16167773-16167849)
chr5 (154-228)||(35885758-35885832)
chr5 (154-226)||(4630394-4630466)
chr5 (154-193)||(18511011-18511050)
[»] chr7 (7 HSPs)
chr7 (154-228)||(9901987-9902061)
chr7 (154-228)||(28029718-28029792)
chr7 (154-228)||(36430593-36430667)
chr7 (152-226)||(21515991-21516065)
chr7 (169-219)||(18343920-18343970)
chr7 (169-219)||(18344823-18344873)
chr7 (169-219)||(18347449-18347499)
[»] chr2 (3 HSPs)
chr2 (154-228)||(5246068-5246142)
chr2 (153-227)||(43903878-43903952)
chr2 (154-205)||(44030359-44030410)
[»] chr3 (1 HSPs)
chr3 (169-219)||(45082763-45082813)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 4362595 - 4362839
Alignment:
Q  1 ctttcgactcaagcaccaaagacattttagaaacacaattactctcgatttcaatcgaggcaatatagtaataaaaaactttaatttaaaaaatatgggg 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||   ||||||||||||||||||||||||||||||    
T  4362595 ctttcgactcaagcaccaaagacattt-agaaacacaattactctcgatttcaattgaggcaatata---ataaaaaactttaatttaaaaaatatgggg 4362690  T
Q  101 ggtttgaatagtccctgtgacttagttccacgagcaaaggaaaaa---gt----------agaaaacgcccaccgtggggctcgaacccacgaccacaag 187  Q
    |||||||||||||||||||||||||||||||||||| | ||||||   ||          | ||||||||||||||||||||||||||||||||||||||    
T  4362691 ggtttgaatagtccctgtgacttagttccacgagcagatgaaaaataggtgaaaaattaaaaaaaacgcccaccgtggggctcgaacccacgaccacaag 4362790  T
Q  188 gttaagagccttgcgctctaccaactgagctagacgggcttcatgcatt 236  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  4362791 gttaagagccttgcgctctaccaactgagctagacgggcttcttgcatt 4362839  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 12132543 - 12132469
Alignment:
Q  154 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12132543 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 12132469  T

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Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 14694902 - 14694828
Alignment:
Q  154 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14694902 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 14694828  T

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Target: chr8; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 154 - 227
Target Start/End: Original strand, 33332316 - 33332389
Alignment:
Q  154 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggct 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33332316 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggct 33332389  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 219
Target Start/End: Complemental strand, 41264192 - 41264125
Alignment:
Q  151 aaacgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 219  Q
    ||||||| || |||||| ||||||||||||||||  |||||| ||||  |||||||||| |||||||||    
T  41264192 aaacgccgactgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacc-actgagcta 41264125  T

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Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 40818914 - 40818992
Alignment:
Q  150 aaaacgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40818914 aaaacgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 40818992  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 42243938 - 42243861
Alignment:
Q  150 aaaacgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggct 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42243938 aaaacgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggct 42243861  T

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Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 7328083 - 7328157
Alignment:
Q  154 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7328083 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 7328157  T

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Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 7984600 - 7984526
Alignment:
Q  154 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7984600 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 7984526  T

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Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 29275981 - 29276055
Alignment:
Q  154 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29275981 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 29276055  T

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Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 32270505 - 32270446
Alignment:
Q  169 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32270505 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 32270446  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 748641 - 748594
Alignment:
Q  172 aacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 219  Q
    |||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  748641 aacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 748594  T

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Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 31972639 - 31972717
Alignment:
Q  150 aaaacgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31972639 aaaacgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 31972717  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 395465 - 395515
Alignment:
Q  169 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 219  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  395465 tcgaacccacgaccacacggttaaaagccgtgcgctctaccagctgagcta 395515  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 29529073 - 29529137
Alignment:
Q  154 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 219  Q
    |||| ||||||||| ||||||||||||||||  |||||| ||||  |||||||||| |||||||||    
T  29529073 cgccgaccgtggggatcgaacccacgaccacgtggttaaaagccacgcgctctacc-actgagcta 29529137  T

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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 3432451 - 3432374
Alignment:
Q  150 aaaacgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggct 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3432451 aaaacgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggct 3432374  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 16167849 - 16167773
Alignment:
Q  151 aaacgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggct 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16167849 aaacgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggct 16167773  T

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Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 35885758 - 35885832
Alignment:
Q  154 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35885758 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 35885832  T

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Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 4630466 - 4630394
Alignment:
Q  154 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggc 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4630466 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggc 4630394  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 18511050 - 18511011
Alignment:
Q  154 cgcccaccgtggggctcgaacccacgaccacaaggttaag 193  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  18511050 cgcccaccgtggggctcgaacccacgaccacgaggttaag 18511011  T

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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 9902061 - 9901987
Alignment:
Q  154 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9902061 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 9901987  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 28029718 - 28029792
Alignment:
Q  154 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28029718 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 28029792  T

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Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 36430593 - 36430667
Alignment:
Q  154 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36430593 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 36430667  T

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Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 21516065 - 21515991
Alignment:
Q  152 aacgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggc 226  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21516065 aacgcctaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggc 21515991  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 18343970 - 18343920
Alignment:
Q  169 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 219  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  18343970 tcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 18343920  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 18344873 - 18344823
Alignment:
Q  169 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 219  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  18344873 tcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 18344823  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 18347499 - 18347449
Alignment:
Q  169 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 219  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  18347499 tcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 18347449  T

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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 5246142 - 5246068
Alignment:
Q  154 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5246142 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggctt 5246068  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 43903878 - 43903952
Alignment:
Q  153 acgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggct 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43903878 acgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagctagacgggct 43903952  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 154 - 205
Target Start/End: Complemental strand, 44030410 - 44030359
Alignment:
Q  154 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44030410 cgcccaccgtggggctcgaacccacgaccacaaggttaagagccttgcgctc 44030359  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 45082763 - 45082813
Alignment:
Q  169 tcgaacccacgaccacaaggttaagagccttgcgctctaccaactgagcta 219  Q
    ||||||||||||||||| |||||| |||| |||||||||||| ||||||||    
T  45082763 tcgaacccacgaccacatggttaaaagccatgcgctctaccagctgagcta 45082813  T

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