View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4049_low_49 (Length: 229)
Name: NF4049_low_49
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4049_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 7488546 - 7488336
Alignment:
| Q |
1 |
tttaggaatagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtcttggaatgatcttactcag |
100 |
Q |
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| T |
7488546 |
tttaggaatagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtcttggaatgatcttactcag |
7488447 |
T |
|
| Q |
101 |
aaccccacctttctgaaaaggaggcacataaacatgtctgacagtcctaatctcatgatccttcatgaaacaaaaccctatgtaactcttctctcatgtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7488446 |
aaccccacctttctgaaaaggaggcacataaacatgtctgatagtcctaatctcatgatccttcatgaaacaaaaccctatgtaactcttctctcatgtc |
7488347 |
T |
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| Q |
201 |
acaccgtaata |
211 |
Q |
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||||||||||| |
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| T |
7488346 |
acaccgtaata |
7488336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 8 - 197
Target Start/End: Original strand, 7873146 - 7873332
Alignment:
| Q |
8 |
atagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtcttggaatgatcttactcagaacccca |
107 |
Q |
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|||||||||||||| |||||||||||||| |||| |||||| |||||||| |||||||||||||| |||| |||||||||||||||| |||||| || | |
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| T |
7873146 |
atagatttagagacggagattttggtgtgacttcttctaaagtcattgattcgttttagatgtgttgaacgttcttggaatgatcttattcagaaaccta |
7873245 |
T |
|
| Q |
108 |
cctttctgaaaaggaggcacataaacatgtctgacagtcctaatctcatgatccttcatgaaacaaaaccctatgtaactcttctctcat |
197 |
Q |
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| T |
7873246 |
cctttatgaaaagaaggcagatgaacatgtttgatagcc---agctcttgatccttaacaaaaaagaaccctatgtaacccttctctcat |
7873332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 203
Target Start/End: Original strand, 6943505 - 6943699
Alignment:
| Q |
9 |
tagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtcttggaatgatcttactcagaaccccac |
108 |
Q |
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||||||||||||| |||||||||| |||||| || ||||| ||||||||| ||| |||||||||||||| |||||||||| |||| ||||| ||| | |
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| T |
6943505 |
tagatttagagacggagattttggcgtggctgccactaaagtcattgatgcttttcagatgtgttcaacgatcttggaatgttcttgttcagagccctgc |
6943604 |
T |
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| Q |
109 |
ctttctgaaaaggaggcacataaacatgtctgacagtcctaatctcatgatccttcatgaaacaaaaccctatgtaactcttctctcatgtgaca |
203 |
Q |
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| T |
6943605 |
ctttctgaaacggcggcacatgaatatgcatgatagtcctagtctcatgatccttaataaaaaacaaaattatgtaacccttctctcatgtgaca |
6943699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 7475682 - 7475563
Alignment:
| Q |
1 |
tttaggaatagatttagagactgagattttggtgtggcttcctctaaattcattgatgggttttagatgtgttcaacggtcttggaatgatcttactcag |
100 |
Q |
| |
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|||||||||||||||||||| ||||||||| |||||||| || |||| ||||||||| | |||||| ||||||||| |||||||||||||||| |||| |
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| T |
7475682 |
tttaggaatagatttagagattgagattttagtgtggctgccattaaagtcattgatgagctttagacttgttcaacgttcttggaatgatcttattcag |
7475583 |
T |
|
| Q |
101 |
aaccccacctttctgaaaag |
120 |
Q |
| |
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| T |
7475582 |
acccccacctttctgaaaag |
7475563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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