View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4049_low_5 (Length: 531)
Name: NF4049_low_5
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4049_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Original strand, 9378590 - 9379124
Alignment:
| Q |
1 |
aaggaaaaataggtaatattcacaatgcacaggtggaagaaaattgtgtagcaggaccaataagttttggatataaagctagcaattgatgagtttaatc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9378590 |
aaggaaaaataggtaatattcacaatgcacaggtggaagaaaattgtgtagcaggaccaataagttttggatataaagctagcaattgatgagtttaatc |
9378689 |
T |
|
| Q |
101 |
ttcccctcatgataagaactcaaataacttaaagccaatatatatagatacatgcatatcatcacaaggcaaagacac------------------aaac |
182 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
9378690 |
ttcccctcatgataagaactcaaataacttaaagccaatatatatagatacatgcatatcatcacaaggcaaagacacaaacacaaacacaaacacaaac |
9378789 |
T |
|
| Q |
183 |
acaaacacactctctacctcaaaaaacattcctctccttcacatgatgtttgaattagaaaacatggaatatagccaatatagtagttattcagcagaag |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9378790 |
acaaacacactctctacctcaaaaaacattcctctccttcacatgatgtttgaattagaaaacatggaatatagccaatatagtagttattcagcagaag |
9378889 |
T |
|
| Q |
283 |
caggagaagaagaaacatacacaactagttgcatatcttccatgagaaagaagaaaaacaagaatacaaagaggtttagtgatgaacaaatcaaatcatt |
382 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9378890 |
caggagaagaagaaacatacacaactagtagcatatcttccatgagaaagaagaaaaacaagaatacaaagaggtttactgatgaacaaatcaaatcatt |
9378989 |
T |
|
| Q |
383 |
ggaaactatgtttgaggctgagacaagacttgaaccaagaaagaagttgcagttagctagagagcttggattgcagccaagacaagttgctatatggttt |
482 |
Q |
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|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9378990 |
ggaaactatgtttgaaactgagacaagacttgaaccaagaaagaagttgcagttagctagagagcttggattgcagccaagacaagttgctatatggttt |
9379089 |
T |
|
| Q |
483 |
caaaacaaaagagctagatggaaatcaaagcaact |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
9379090 |
caaaacaaaagagctagatggaaatcaaagcaact |
9379124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 430 - 505
Target Start/End: Complemental strand, 24692454 - 24692379
Alignment:
| Q |
430 |
tgcagttagctagagagcttggattgcagccaagacaagttgctatatggtttcaaaacaaaagagctagatggaa |
505 |
Q |
| |
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||||| |||| |||| ||||||||||||||||||||| ||||||||||||||||||||| ||| ||||| ||||| |
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| T |
24692454 |
tgcagctagcaagagctcttggattgcagccaagacaaattgctatatggtttcaaaacagaagggctaggtggaa |
24692379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 8185709 - 8185779
Alignment:
| Q |
53 |
aggaccaataagttttggatataaagctagcaattga-tgagtttaatcttcccctcatgataagaactca |
122 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| | ||| ||||| |||||||||||||||||| |
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|
| T |
8185709 |
aggaccaatgagttttggatataaagctagcaattgagggggttaaatctgatcctcatgataagaactca |
8185779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 488
Target Start/End: Original strand, 37519798 - 37519843
Alignment:
| Q |
443 |
agagcttggattgcagccaagacaagttgctatatggtttcaaaac |
488 |
Q |
| |
|
||||||||| ||||| ||||||||||||||| | |||||||||||| |
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|
| T |
37519798 |
agagcttggtttgcaaccaagacaagttgctgtttggtttcaaaac |
37519843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 414 - 511
Target Start/End: Complemental strand, 42087584 - 42087487
Alignment:
| Q |
414 |
gaaccaagaaagaagttgcagttagctagagagcttggattgcagccaagacaagttgctatatggtttcaaaacaaaagagctagatggaaatcaaa |
511 |
Q |
| |
|
|||||||| |||||| |||| | || ||||| ||||| |||||||| ||||||||||||||||||||||| |||| |||||| |||||||||||||| |
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| T |
42087584 |
gaaccaaggaagaagatgcaacttgcaagagatcttggtttgcagcctagacaagttgctatatggtttcagaacagaagagcaagatggaaatcaaa |
42087487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 443 - 489
Target Start/End: Complemental strand, 16763055 - 16763009
Alignment:
| Q |
443 |
agagcttggattgcagccaagacaagttgctatatggtttcaaaaca |
489 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
16763055 |
agagcttggtttgcaaccaagacaagttgctatatggtttcaaaaca |
16763009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 514
Target Start/End: Complemental strand, 17181959 - 17181898
Alignment:
| Q |
453 |
ttgcagccaagacaagttgctatatggtttcaaaacaaaagagctagatggaaatcaaagca |
514 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| | ||| || |||||||| ||||||| |
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|
| T |
17181959 |
ttgcaacctagacaagttgctatatggtttcaaaatagaagggcaagatggaagacaaagca |
17181898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 464 - 517
Target Start/End: Original strand, 42401435 - 42401488
Alignment:
| Q |
464 |
acaagttgctatatggtttcaaaacaaaagagctagatggaaatcaaagcaact |
517 |
Q |
| |
|
||||||||||||||| ||||||||||| | ||||||| ||||| |||||||||| |
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|
| T |
42401435 |
acaagttgctatatgttttcaaaacaagaaagctagaaggaaaccaaagcaact |
42401488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 453 - 517
Target Start/End: Complemental strand, 2342836 - 2342772
Alignment:
| Q |
453 |
ttgcagccaagacaagttgctatatggtttcaaaacaaaagagctagatggaaatcaaagcaact |
517 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| || | |||||| ||||| ||| |||||||||| |
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|
| T |
2342836 |
ttgcagcctagacaaattgctatatggtttcagaatagaagagcaagatgcaaaacaaagcaact |
2342772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 488
Target Start/End: Complemental strand, 44593656 - 44593604
Alignment:
| Q |
436 |
tagctagagagcttggattgcagccaagacaagttgctatatggtttcaaaac |
488 |
Q |
| |
|
|||||| ||| ||||| ||||||||| | ||||||||||| |||||||||||| |
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|
| T |
44593656 |
tagctaaagaccttggtttgcagccacggcaagttgctatttggtttcaaaac |
44593604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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