View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4049_low_50 (Length: 222)

Name: NF4049_low_50
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4049_low_50
NF4049_low_50
[»] chr8 (5 HSPs)
chr8 (17-205)||(449657-449845)
chr8 (17-79)||(469067-469129)
chr8 (19-105)||(475616-475702)
chr8 (93-126)||(469128-469161)
chr8 (17-71)||(481249-481303)
[»] chr2 (1 HSPs)
chr2 (19-94)||(27489249-27489324)


Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 449657 - 449845
Alignment:
Q  17 tactttggggtaaagctgaagaagtagttgatgttaaagagaagatagttccaaaatctatggttaatgagacagaggaagtgaaaattgatttggaaga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  449657 tactttggggtaaagctgaagaagtagttgatgttaaagagaagatagttccaaaatctatggttaatgagacagaggaagtgaaaattgatttggaaga 449756  T
Q  117 acctcttttaaccaattttttgaaaaccagatcggagattgaatcattgaattcttcgagtcatggttcaattggttcaactacttgaa 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  449757 acctcttttaaccaattttttgaaaaccagatcggagattgaatcattgaattcttcgagttatggttcaattggttcaactacttgaa 449845  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 469067 - 469129
Alignment:
Q  17 tactttggggtaaagctgaagaagtagttgatgttaaagagaagatagttccaaaatctatgg 79  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  469067 tactttggggtaaagctgaagaagtagttgatattaaagagaatatagttccaaaatctatgg 469129  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 475616 - 475702
Alignment:
Q  19 ctttggggtaaagctgaagaagtagttgatgttaaagagaagatagttccaaaatctatggttaatgagacagaggaagtgaaaatt 105  Q
    |||||||||||||| ||||| |||||  |||| ||| ||||||||| ||||||||||||||||| | ||||||||||||||||||||    
T  475616 ctttggggtaaagcggaagatgtagtccatgtcaaacagaagatagatccaaaatctatggttactcagacagaggaagtgaaaatt 475702  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 126
Target Start/End: Original strand, 469128 - 469161
Alignment:
Q  93 ggaagtgaaaattgatttggaagaacctctttta 126  Q
    ||||||||||||||||||||||||||||||||||    
T  469128 ggaagtgaaaattgatttggaagaacctctttta 469161  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 481249 - 481303
Alignment:
Q  17 tactttggggtaaagctgaagaagtagttgatgttaaagagaagatagttccaaa 71  Q
    |||||||||||||||||||||| |||| ||| || |||||||||| || ||||||    
T  481249 tactttggggtaaagctgaagatgtagctgaagtcaaagagaagacagatccaaa 481303  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 27489324 - 27489249
Alignment:
Q  19 ctttggggtaaagctgaagaagtagttgatgttaaagagaagatagttccaaaatctatggttaatgagacagagg 94  Q
    |||||||| ||||||||||| ||||||||||| |||||||||  |  || ||||||||| ||||||| ||||||||    
T  27489324 ctttggggaaaagctgaagatgtagttgatgtgaaagagaagggaaatcaaaaatctatcgttaatgcgacagagg 27489249  T

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