View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4049_low_6 (Length: 462)
Name: NF4049_low_6
Description: NF4049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4049_low_6 |
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| [»] scaffold0316 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 14 - 171
Target Start/End: Original strand, 23011380 - 23011537
Alignment:
| Q |
14 |
agagatgaaaaattcgtggagaagatgaaggagcagtggaatgttgattttattatttttaatctcaaccgttgatttttaattcgccacgtgtcacgca |
113 |
Q |
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| T |
23011380 |
agagatgaaaaattcgtggagaagatgaaggagcagtggaatgttgattttattatttttaatctcaaccgttgatttttgattcgccacgtgtcacgca |
23011479 |
T |
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| Q |
114 |
tcggtgaatcgaaccgaaaaaatggagcatataagcactggagcagatttgaactcct |
171 |
Q |
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| T |
23011480 |
ttggtgaatcgaaccggaaaaatggagcatataagcactggagcagatctgaactcct |
23011537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 14 - 161
Target Start/End: Complemental strand, 53371571 - 53371424
Alignment:
| Q |
14 |
agagatgaaaaattcgtggagaagatgaaggagcagtggaatgttgattttattatttttaatctcaaccgttgatttttaattcgccacgtgtcacgca |
113 |
Q |
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| T |
53371571 |
agagatgaaaaattcgtggagaagatgaaggagtagtggaatgttgattttattatttttaatctcaaccgttgatttttgattcgccacgtgtcacgca |
53371472 |
T |
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| Q |
114 |
tcggtgaatcgaaccgaaaaaatggagcatataagcactggagcagat |
161 |
Q |
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| T |
53371471 |
tcgatgaatcgaatcggaaaaacggagcatataagcactggagcagat |
53371424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0316 (Bit Score: 140; Significance: 4e-73; HSPs: 1)
Name: scaffold0316
Description:
Target: scaffold0316; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 14 - 169
Target Start/End: Complemental strand, 2689 - 2534
Alignment:
| Q |
14 |
agagatgaaaaattcgtggagaagatgaaggagcagtggaatgttgattttattatttttaatctcaaccgttgatttttaattcgccacgtgtcacgca |
113 |
Q |
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| T |
2689 |
agagatgaaaaattcgtggagaagatgaaggagcagtggaatgttgattttattatttttaatctcaaccgttgatttttgattcgccatgtgtcacgca |
2590 |
T |
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| Q |
114 |
tcggtgaatcgaaccgaaaaaatggagcatataagcactggagcagatttgaactc |
169 |
Q |
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| T |
2589 |
tcggtgaatcgaaccggaaaaatggagcatataagcactggagcagatctgaactc |
2534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 251 - 447
Target Start/End: Complemental strand, 47682 - 47487
Alignment:
| Q |
251 |
tatttatataaaggaaatgctacaa-tgcattaaggacacttgttaagaagctaaaaatgaaattcagagatgaattcaaggtaagaaaaagttaattta |
349 |
Q |
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|||||| |||| | ||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
47682 |
tatttacataaggaaaatgctacaaatgcactaaggacacttgttaagaagctaaaaatgaaattcagtgatgaattcaaagtaagaaaaagttaattta |
47583 |
T |
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| Q |
350 |
atttctaaactttatcccggaaattatgcatttaacacctttaaactttaaaaattaacnnnnnnnnaccttgaattcatcacttaattcaattttta |
447 |
Q |
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| T |
47582 |
atttctaaactttatcctgaaaattatgcatttaacacctttaaactttaaaatttgac--ttttttaccttgaattcatcacttaattccattttta |
47487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 170 - 252
Target Start/End: Complemental strand, 47912 - 47830
Alignment:
| Q |
170 |
cttattctattgttaaaagatcttcagaatgagcttcattttccattcttgtgtaattttctttgtaaaaattataagcaata |
252 |
Q |
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| T |
47912 |
cttattctattgttaaaagatcctcagaatgagcttcattttccattcttgtgtaattttctttgtaaaaattataagcaata |
47830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 334
Target Start/End: Original strand, 47473 - 47519
Alignment:
| Q |
288 |
acttgttaagaagctaaaaatgaaattcagagatgaattcaaggtaa |
334 |
Q |
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| T |
47473 |
acttgttaagaagttaaaaatggaattaagtgatgaattcaaggtaa |
47519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 402
Target Start/End: Original strand, 32292774 - 32292807
Alignment:
| Q |
369 |
gaaattatgcatttaacacctttaaactttaaaa |
402 |
Q |
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| T |
32292774 |
gaaattattcatttaacacctttaaactttaaaa |
32292807 |
T |
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